Changesets: Import 2017-06-07 23:51:09
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master eeb7c0ea 2015-10-30 10:03:51 Details Diff |
COMP: Fix WrapITK.pth path on windows This error only happens with the option Slicer_USE_ITKPython enabled. The WrapITK path isn't taking in consideration the multi-configuration style for windows. Adding the CMAKE_CFG_INTDIR variable fixes this. Since on other single configuration generators (like make) the variable reduces to ".", we can simply interject it where needed. Reviewed-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Johan Andruejol <johan.andruejol@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24679 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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master 457e1182 2015-10-30 09:38:18 Details Diff |
COMP: Fix build "ambiguous call to abs()" error. This commit fixes error reported on the Linux factory by reverting r24671 (COMP: Consistently use std::abs to avoid implicit integer truncations) git-svn-id: http://svn.slicer.org/Slicer4/trunk@24678 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/ExtractSkeleton/SkelGraph.cxx | Diff File | ||
| mod - Modules/Scripted/EditorLib/Logic/vtkImageFillROI.cxx | Diff File | ||
| mod - Modules/Scripted/EditorLib/Logic/vtkImageSlicePaint.cxx | Diff File | ||
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master f240d746 2015-10-29 18:23:28 Details Diff |
COMP: Fix DiffusionWeightedVolumeMaskingTest linker error Changes in r24673 [1] cause a linker error when building DiffusionWeightedVolumeMaskingTest in Visual Studio 2013: 1>------ Build started: Project: DiffusionWeightedVolumeMaskingTest, Configuration: Debug x64 ------ 1>DiffusionWeightedVolumeMaskingTest.obj : error LNK2019: unresolved external symbol __imp_ModuleEntryPoint referenced in function "void __cdecl RegisterTests(void)" (?RegisterTests@@YAXXZ) 1>C:\dev\SD\Slicer-build\bin\Debug\DiffusionWeightedVolumeMaskingTest.exe : fatal error LNK1120: 1 unresolved externals This commit reverts some of the changes to make the test build and run. [1] http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=24673 From: Max Smolens <max.smolens@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24677 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/DiffusionWeightedVolumeMasking/Testing/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/DiffusionWeightedVolumeMasking/Testing/DiffusionWeightedVolumeMaskingTest.cxx | Diff File | ||
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master e2a13021 2015-10-29 03:13:19 Details Diff |
ENH: Add test for vtkMRMLDoubleArrayStorageNode reader/writer Tests the new writer/reader as well as the reader given the old writer convention which was assuming labels were always set. From: Alexis Girault <alexis.girault@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24676 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/Testing/CMakeLists.txt | Diff File | ||
| add - Libs/MRML/Core/Testing/TestData/vtkMRMLDoubleArrayNodeTest1_OldFile.mcsv | Diff File | ||
| mod - Libs/MRML/Core/Testing/vtkMRMLDoubleArrayNodeTest1.cxx | Diff File | ||
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master 48a19e80 2015-10-29 03:09:23 Details Diff |
BUG: Fix support for missing labels in vtkMRMLDoubleArrayStorage reader The reader in vtkMRMLDoubleArrayStorage was always setting the first line of values in the .mcsv file as labels. If the stored vtkMRMLDoubleArray had not labels set, then the retrieved double array labels would be set to the first line of numerical values, associated with the first data point. This resulted in a missing data point as well as shifted indices for all remaining points, and incorrect labels. The correction this commit offers is to write the line '# nolabels' in the file if labels exist. If the reader finds this line, it will set the first line of values as the first data point, instead of setting it as label values. Examples : Here are four examples with (u,v,w) as labels, (12.1,425.577,-454) for the first data point, and (8.79633e+09,0,-1) for the second one: (1) New writer: vtkMRMLDoubleArrayNode with labels # measurement file filename.mcsv u,v,w 12.1,425.577,-454 8.79633e+09,0,-1 (2) New writer: vtkMRMLDoubleArrayNode with no labels set # measurement file filename.mcsv # nolabels 12.1,425.577,-454 8.79633e+09,0,-1 (3) Old writer: vtkMRMLDoubleArrayNode with labels # measurement file filename.mcsv # columns = x,y,yerr u,v,w 12.1,425.577,-454 8.79633e+09,0,-1 (4) Old writer: vtkMRMLDoubleArrayNode with no labels set # measurement file filename.mcsv # columns = x,y,yerr 12.1,425.577,-454 8.79633e+09,0,-1 Observations : The line '# columns = x,y,yerr' was hardcoded [1] in the former writer and had no meaning related to the actual double array node labels. The inspiration problably came from .mcsv or .acsv writers/readers [2][3] but had no effect here. [1] https://github.com/Slicer/Slicer/blob/6e63b4bf5dbc65a9973160de7397dfc47882e038/Libs/MRML/Core/vtkMRMLDoubleArrayStorageNode.cxx#L244 [2] https://github.com/Slicer/Slicer/blob/master/Modules/Loadable/Markups/MRML/vtkMRMLMarkupsFiducialStorageNode.cxx#L159-L185 [3] https://github.com/Slicer/Slicer/blob/master/Modules/Loadable/Annotations/MRML/vtkMRMLAnnotationFiducialsStorageNode.cxx#L245-L268 From: Alexis Girault <alexis.girault@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24675 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLDoubleArrayStorageNode.cxx | Diff File | ||
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master 23851258 2015-10-29 02:53:27 Details Diff |
ENH: Update SimpleITK: Use SuperBuild scripts for additional dependencies. Configure with SimpleITK's Superbuild CMake file, to allow additional dependencies to be build. This is done by adding a second external project just for the download step, so that the configuration can be done in the Superbuild sub-directory as the source directory. $ git shortlog --no-merges 4531702..6f184 Bradley Lowekamp (72): Updating version for 0.10.0 development Update SimpleITKExamples version Adding SimpleITK 0.9.0 Download URLs to doxygen Improve exception when unable to create ImageIO GetGitRevisionDescription: Fix issue referencing project source Replace tabs with spaces. Adding ITK version information to the SimpleITK version info. Update PCRE to 9.37 in Superbuild WIP: Adding local transform fixes Using local static for itk version string Adding forbid download CMake option Forbid downloading data with option ADD SITK_PYTHON_USE_VIRTUAL_ENV option Create separate source and data tar-balls for distribution. Fix checking SimpleITK source directory for External data file Add CMake find package module for the Lua interpreter. Use SITK_LUA_EXECUTABLE for code generation Use CMake find_package for finding Lua libraries and include Add Lua Superbuild support Pass all variable beginning with SITK_ to the SimpleITK build. Removing integrated lua source code Add Superbuild of GoogleTest Use find_package for google test Remove anonymous namespace for std::vector output operator. Remove the GTest source code from testing Adding ObjectCount measurement to ConnectedComponents filter Use CMAKE_POSITION_INDEPENDENT_CODE property over compiler flag Replace superbuild fPIC with CMake property for ITK. Remove adding fPIC flag in language options. Add CMake variable to specify additional lua libraries Add unsigned int specifier Mark GTest superbuild options as advanced Mark additional Lua variables as advanced Correct variable name SimpleITK_VARS Adding CMake upstream FindGTest.cmake Fix Superbuild variable Install GTest with MSVC in expected directory Install MSVC into lib directory with out prefix Disable GTest using TR1::tuple with VS11 Fix CMake syntactical errors in GTest Superbuild Remove quotes around ep_extra_args Fix CMake equals syntax. More CMake fixes Add support to join 3d image series into 4d image Update ITK superbuild version to 4.8 release COMP: Fix JoinSeries with 4DImage test Add support to extract 3d image from 4d. Require libraries when a wrapping for a language is enabled Update shape statistics to always use int64_t for labelmap type. Fix finding lua executable when not explicitly set. Adding wrapping for LabelIntensityStatisticsImageFilter Change default of SimpleITK_PYTHON_THREADS to ON Update SWIG to 3.0.7 Address warnings with signed integer comparison Updating ITK v4.8 along release branch Do not pass unneeded language arguments on the command line add CastImageFilter to support output writing Do not force CMAKE_INSTALL_PREFIX if already set. Don't pass SITK_REQUIRED_ITK_MODULES in Superbuild Move CMake file to CMake directory WIP: Adding local transform fixes Adding ObjectCount measurement to ConnectedComponents filter Add unsigned int specifier Require libraries when a wrapping for a language is enabled Do not pass unneeded language arguments on the command line Updating ITK superbuild towards v4.8.1 pending release Add missing Java variables to the language options files Update ITK superbuild to 4.8.1 release Updating SimpleITK to 0.9.1 version for release Add md5 to URL for check sum Update Python download URLs to use https Adding 0.9.1 release eggs to download page Dave Chen (2): Regenerated the .i files Regenerated the .i files David T. Chen (7): Regenerate filters.csv for SimpleITK 0.9.0 Re-regenerated filters.csv Fix leading space problem in doxy2swig.py Updated space_parse with a noLeadingSpace flag Rewrite Show to support Fiji Fix leading space problem in doxy2swig.py Updated space_parse with a noLeadingSpace flag Ziv Yaniv (2): STYLE: change SetOptimizerAsLBFGSB parameter name to match other methods. Modified example to match parameter name change in SetOptimizerAsLBFGSB. Reviewed-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24674 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_SimpleITK.cmake | Diff File | ||
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master d65f2de9 2015-10-29 00:15:41 Details Diff |
BUG: Fix DiffusionWeightedVolumeMasking module and add test. See 0003855 The updated line calculates the magnitude of each gradient, and determines that an image is "baseline" if the magnitude is smaller than a threshold. The use of "abs()" on double values caused the magnitude to always be 0, and therefore all images were considered as "baseline" and included in the average computed by the filter and presented as "Output baseline volume" to the user. This commit fixes the incorrect logic using "fabs()", simplifies the test case removing the use of "--removeislands", updates the test harness to use "compare" functions to validate the output of the module against baseline images. Note that the "--removeislands" should be tested in a separate test case. Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Orjan Bergmann <orjan.bergmann@gmail.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24673 3bd1e089-480b-0410-8dfb-8563597acbee |
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| add - Modules/CLI/DiffusionWeightedVolumeMasking/Data/Baseline/DiffusionWeightedVolumeMaskingTest_EstimatedBaseline.nhdr | Diff File | ||
| add - Modules/CLI/DiffusionWeightedVolumeMasking/Data/Baseline/DiffusionWeightedVolumeMaskingTest_EstimatedBaseline.raw.gz | Diff File | ||
| add - Modules/CLI/DiffusionWeightedVolumeMasking/Data/Baseline/DiffusionWeightedVolumeMaskingTest_OtsuThresholdMask.nhdr | Diff File | ||
| add - Modules/CLI/DiffusionWeightedVolumeMasking/Data/Baseline/DiffusionWeightedVolumeMaskingTest_OtsuThresholdMask.raw.gz | Diff File | ||
| mod - Modules/CLI/DiffusionWeightedVolumeMasking/DiffusionWeightedVolumeMasking.cxx | Diff File | ||
| mod - Modules/CLI/DiffusionWeightedVolumeMasking/Testing/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/DiffusionWeightedVolumeMasking/Testing/DiffusionWeightedVolumeMaskingTest.cxx | Diff File | ||
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master 482471ad 2015-10-28 21:54:52 Details Diff |
STYLE: Remove unused code related to now disabled ITKv3 compatibility mode Reviewing changes introduced in r24669 (COMP: Add ITK_OVERRIDE designations for C++11) also identified some now dead code that was used to override a parent class method when ITKv3 compatibility was enabled. Considering that ITKv3_COMPATIBILITY is disabled since r23960 (ENH: Disable ITKv3 compatibility to enable 64-bit ids on windows), this commit removes the code that was initially introduced in r17784 (ENH: Transform classes compatible with ITKv[34]) Note that the code associated with itkAnisotropicSimilarity3DTransformTest is now broken. Since it is not compiled and is associated with a module in the legacy category, a comment has been added to provide hint. Finally, note that all tests associated with ResampleDTI and ExpertAutomatedRegistration modules are passing: $ ctest -L ExpertAutomated Test project /home/jcfr/Projects/Slicer-Debug/Slicer-build Start 494: ExpertAutomatedRegistrationTestDataFixed 1/5 Test 0000494: ExpertAutomatedRegistrationTestDataFixed ....... Passed 0.17 sec Start 495: ExpertAutomatedRegistrationTestDataRigidArgs 2/5 Test 0000495: ExpertAutomatedRegistrationTestDataRigidArgs ... Passed 0.15 sec Start 496: ExpertAutomatedRegistrationTestDataRigid 3/5 Test 0000496: ExpertAutomatedRegistrationTestDataRigid ....... Passed 0.20 sec Start 497: ExpertAutomatedRegistrationTestDataAffine 4/5 Test 0000497: ExpertAutomatedRegistrationTestDataAffine ...... Passed 0.19 sec Start 498: ExpertAutomatedRegistrationTestDataBSpline 5/5 Test 0000498: ExpertAutomatedRegistrationTestDataBSpline ..... Passed 0.90 sec 100% tests passed, 0 tests failed out of 5 Label Time Summary: ExpertAutomatedRegistration = 1.61 sec Total Test time (real) = 1.67 sec $ ctest -L ResampleDTI Test project /home/jcfr/Projects/Slicer-Debug/Slicer-build Start 470: ResampleDTIVolumeRotationNNTest 1/7 Test 0000470: ResampleDTIVolumeRotationNNTest ............... Passed 1.02 sec Start 471: ResampleDTIVolume2RigidTransformsLinearTest 2/7 Test 0000471: ResampleDTIVolume2RigidTransformsLinearTest ... Passed 0.91 sec Start 472: ResampleDTIVolumeBSplineWSInterpolationTest 3/7 Test 0000472: ResampleDTIVolumeBSplineWSInterpolationTest ... Passed 10.66 sec Start 473: ResampleDTIVolumeBSplineInterpolationTest 4/7 Test 0000473: ResampleDTIVolumeBSplineInterpolationTest ..... Passed 1.90 sec Start 474: ResampleDTIVolumeHFieldTest 5/7 Test 0000474: ResampleDTIVolumeHFieldTest ................... Passed 3.14 sec Start 475: itkTestMainExtendedScalarTest 6/7 Test 0000475: itkTestMainExtendedScalarTest ................. Passed 1.24 sec Start 476: itkTestMainExtendedFailedTest 7/7 Test 0000476: itkTestMainExtendedFailedTest ................. Passed 1.66 sec 100% tests passed, 0 tests failed out of 7 Label Time Summary: ResampleDTIVolume = 20.54 sec Total Test time (real) = 20.60 sec Co-authored-by: Francois Budin <fbudin@unc.edu> Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24672 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkAnisotropicSimilarity3DTransform.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkAnisotropicSimilarity3DTransform.txx | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/itkAnisotropicSimilarity3DTransformTest.cxx | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DNonRigidTransform.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DNonRigidTransform.txx | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkWarpTransform3D.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkWarpTransform3D.txx | Diff File | ||
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master 19c03077 2015-10-28 19:39:19 Details Diff |
COMP: Consistently use std::abs to avoid implicit integer truncations Similarly to r24621 (BUG: Fix incorrect truncation to integer in vtkSlicerTransformLogic), this commit applies the same fix to the entire code base to avoid clang warnings of the following form: Slicer/Base/Logic/vtkSlicerTransformLogic.cxx:718:59: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] rotateArrow->RotateX(vtkMath::DegreesFromRadians(acos(abs(sliceNormal_RAS[2])))); Reviewed-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24671 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/ExtractSkeleton/SkelGraph.cxx | Diff File | ||
| mod - Modules/Scripted/EditorLib/Logic/vtkImageFillROI.cxx | Diff File | ||
| mod - Modules/Scripted/EditorLib/Logic/vtkImageSlicePaint.cxx | Diff File | ||
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master 104ef986 2015-10-28 19:12:35 Details Diff |
ENH: Generate high-resolution magnified screenshots for 3D view. See 0003885 See http://www.na-mic.org/Bug/view.php?id=3885 This commit updates the qMRMLScreenShotDialog to use the class vtkRenderLargeImage now supporting gradient background since r24668 to do off screen magnified rendering (high resolution) of the 3D render window when capturing screen shots. A bug still remains for the 2D render windows in that they get tiled by this method instead of scaled, so continue using the Qt after capture scaling for the full view and the slice views. Reviewed-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> Tested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Nicole Aucoin <nicole@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24670 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/Resources/UI/qMRMLScreenShotDialog.ui | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLScreenShotDialog.cxx | Diff File | ||
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master 3c57b78d 2015-10-28 17:27:32 Details Diff |
COMP: Add ITK_OVERRIDE designations for C++11 When supported (i.e. under C++11 compiler support), use the override designation to ensure that virtual functions have correct signature for overriding their parent classes. Reviewed-by: Matt McCormick <matt.mccormick@kitware.com> Reviewed-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24669 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkITKTransformInverse.h | Diff File | ||
| mod - Libs/MRML/IDImageIO/itkMRMLIDImageIO.h | Diff File | ||
| mod - Libs/MRML/IDImageIO/itkMRMLIDImageIOFactory.h | Diff File | ||
| mod - Libs/vtkITK/itkGrowCutSegmentationImageFilter.h | Diff File | ||
| mod - Libs/vtkITK/itkLevelTracingImageFilter.h | Diff File | ||
| mod - Libs/vtkITK/itkLevelTracingImageFilter.txx | Diff File | ||
| mod - Libs/vtkITK/itkNewOtsuThresholdImageCalculator.h | Diff File | ||
| mod - Libs/vtkITK/itkNewOtsuThresholdImageFilter.h | Diff File | ||
| mod - Libs/vtkITK/itkTimeSeriesDatabase.h | Diff File | ||
| mod - Modules/CLI/CreateDICOMSeries/CreateDICOMSeries.cxx | Diff File | ||
| mod - Modules/CLI/DWIJointRicianLMMSEFilter/itkComputeRestrictedHistogram.h | Diff File | ||
| mod - Modules/CLI/DWIJointRicianLMMSEFilter/itkLMMSEVectorImageFilter.h | Diff File | ||
| mod - Modules/CLI/DWIJointRicianLMMSEFilter/itkOtsuStatistics.h | Diff File | ||
| mod - Modules/CLI/DWIJointRicianLMMSEFilter/itkOtsuThreshold.h | Diff File | ||
| mod - Modules/CLI/DWIRicianLMMSEFilter/itkComputeRestrictedHistogram.h | Diff File | ||
| mod - Modules/CLI/DWIRicianLMMSEFilter/itkComputeStatisticsWherePositiveFilter.h | Diff File | ||
| mod - Modules/CLI/DWIRicianLMMSEFilter/itkExtractVolumeFilter.h | Diff File | ||
| mod - Modules/CLI/DWIRicianLMMSEFilter/itkLMMSEVectorImageFilter.h | Diff File | ||
| mod - Modules/CLI/DWIRicianLMMSEFilter/itkLMMSEVectorImageFilterStep.h | Diff File | ||
| mod - Modules/CLI/DWIRicianLMMSEFilter/itkMaskedMeanImageFilter.h | Diff File | ||
| mod - Modules/CLI/DWIUnbiasedNonLocalMeansFilter/itkComputeRestrictedHistogram.h | Diff File | ||
| mod - Modules/CLI/DWIUnbiasedNonLocalMeansFilter/itkOtsuStatistics.h | Diff File | ||
| mod - Modules/CLI/DWIUnbiasedNonLocalMeansFilter/itkOtsuThreshold.h | Diff File | ||
| mod - Modules/CLI/DWIUnbiasedNonLocalMeansFilter/itkUNLMFilter.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkAffineImageToImageRegistrationMethod.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkAnisotropicSimilarity3DTransform.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkAnisotropicSimilarityLandmarkBasedTransformInitializer.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkBSplineImageToImageRegistrationMethod.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkBSplineImageToImageRegistrationMethod.txx | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkImageRegionMomentsCalculator.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkImageToImageRegistrationHelper.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkImageToImageRegistrationMethod.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkInitialImageToImageRegistrationMethod.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkOptimizedImageToImageRegistrationMethod.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkOptimizedImageToImageRegistrationMethod.txx | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkRigidImageToImageRegistrationMethod.h | Diff File | ||
| mod - Modules/CLI/N4ITKBiasFieldCorrection/N4ITKBiasFieldCorrection.cxx | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/Testing/itkDifferenceDiffusionTensor3DImageFilter.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/dtiprocessFiles/itkHFieldToDeformationFieldImageFilter.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DBSplineInterpolateImageFunction.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DFSAffineTransform.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DLinearInterpolateFunction.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DNearestNeighborInterpolateFunction.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DNonRigidTransform.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DPPDAffineTransform.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DResample.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DRigidTransform.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DWindowedSincInterpolateImageFunction.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkSeparateComponentsOfADiffusionTensorImage.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkTransformDeformationFieldFilter.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkWarpTransform3D.h | Diff File | ||
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master bf3f8506 2015-10-28 16:53:21 Details Diff |
BUG: Update VTK to fix snapshot scaling and VS2013 compilation warning See http://www.na-mic.org/Bug/view.php?id=3885 $ git shortlog 716b0f5..d620f8f --no-merges Max Smolens (2): COMP: Fix HAVE_ROUND macro redefinition build warning on Visual Studio 2013 Fix rendering gradient background with vtkRenderLargeImage git-svn-id: http://svn.slicer.org/Slicer4/trunk@24668 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master 03a598bb 2015-10-28 14:33:48 Details Diff |
BUG: ExtensionWizard: Fix "compare URL" generation The extensionWizard now handles the creation of the "Compare URL" when someone contributes an updated Extension Description File. The issue appeared when using the ExtensionWizard as reported below: $ bin/slicerExtensionWizard --contribute ~/src/Slicer-MyExtension/ The reported error was: //------------ building compare URL for update failed to build compare URL: 404 {u'documentation_url': u'https://developer.github.com/v3/repos/commits/#compare-two-commits', u'message': u'Not Found'} //------------ Reviewed-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> Tested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Jean-Baptiste VIMORT <jb.vimort@gmail.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24667 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Utilities/Scripts/SlicerWizard/ExtensionWizard.py | Diff File | ||
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master d42d6c9e 2015-10-27 21:59:56 Details Diff |
BUG: Handle download/install error for extension dependencies. The function downloadAndInstallExtension() did not handled the case of downloadExtension() returning 0. This commit implements the same approach as in scheduleExtensionForUpdate() to handle that case correctly in downloadAndInstallExtension(). To avoid overwhelming the user with a lot of different messages when some of all dependent extensions failed to download, error messages are accumulated in a list and shown only outside the loop if it applies. Reviewed-by: Andras Lasso <lasso@queensu.ca> Reviewed-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Francois Budin <fbudin@unc.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24666 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/qSlicerExtensionsManagerModel.cxx | Diff File | ||
| mod - Base/QTCore/qSlicerExtensionsManagerModel.h | Diff File | ||
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master e2bd1ae5 2015-10-27 20:12:05 Details Diff |
BUG: Preserve custom color tables on scene view restore Moving the color table information into files on disk created a bug (analogous to the same situation with fiducials[1]) that when a scene contains scene views that contain custom color tables the scene view restore wipes out the colors in the color node in the main scene. When a MRML file is read, the files on disk are not reread to fill in scene view nodes, so the scene view color table node is empty. This fix adds a check for if the scene is currently restoring a scene view, and if so, don't proceed with the copy as it will result in an color table with the correct number of entries (as the number of colors is saved in the MRML file) but all black and unamed. Added a test to ensure that restoring scene views with changed color table nodes doesn't result in a zeroed out color table, nor a changed one (for this work around state) [1] fiducials were fixed in this commit: http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=24376 https://github.com/Slicer/Slicer/commit/1440084bbdd9d11c1e9e1f195087f521a91af186 Issue 0003992 From: Nicole Aucoin <nicole@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24665 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLColorTableNode.cxx | Diff File | ||
| mod - Modules/Loadable/Colors/Testing/Python/CMakeLists.txt | Diff File | ||
| add - Modules/Loadable/Colors/Testing/Python/CustomColorTableSceneViewRestoreTestBug3992.py | Diff File | ||
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master b304b93a 2015-10-27 11:40:32 Details Diff |
ENH: Update MultiVolumeImporter hash * use logging for debug messages * removed 'from __main__' from the plugin git-svn-id: http://svn.slicer.org/Slicer4/trunk@24664 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master a744cec3 2015-10-26 22:58:56 Details Diff |
BUG: Incorporate fix for failing MultiVolumeExplorer GUI test Update the git tag for MultiVolumeExplorer to the version that fixes the qSlicerMultiVolumeExplorerModuleWidgetGenericTest. git shortlog c97e9d7b88abdd429b5410b5985d3fd03de851ec..9cd47306e7ee761072a07fef5ad1eaa7bb452816 --no-merges Nicole Aucoin (1): BUG: fix failing widget generic test due to size hint From: Nicole Aucoin <nicole@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24663 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master 35b96201 2015-10-25 21:52:20 Details Diff |
BUG: Fix CERTIFICATE_VERIFY_FAILED error using "urllib2.urlopen()" on MacOSX See http://www.na-mic.org/Bug/view.php?id=4067 This commit ensures the "Slicer.crt" certificate is found when using function like "urlib2.urlopen()" in the python interactor from an install tree on MacOSX. This is needed because on MacOSX the launcher is not used when the application is installed. Reported-by: Andriy Fedorov <fedorov@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24662 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/qSlicerCoreApplication.cxx | Diff File | ||
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master 09ddedda 2015-10-24 02:13:23 Details Diff |
ENH: Add python method cli.runSync(). See 0003600 See http://www.na-mic.org/Bug/view.php?id=3600 Suggested-by: Michael Halle <mhalle@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24661 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/cli.py | Diff File | ||
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master 2b03bb51 2015-10-24 02:01:04 Details Diff |
COMP: Fix "enum-compare" warning in qMRMLTransformSliders. See 0004059 See http://www.na-mic.org/Bug/view.php?id=4059 git-svn-id: http://svn.slicer.org/Slicer4/trunk@24660 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLTransformSliders.cxx | Diff File | ||
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master c668f845 2015-10-23 15:53:45 Details Diff |
BUG: 0004060 make package button perform a toggle (save dialog) See: http://www.na-mic.org/Bug/view.php?id=4060 From: Steve Pieper <pieper@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24659 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/qSlicerSaveDataDialog.cxx | Diff File | ||
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master d897bddf 2015-10-23 15:38:06 Details Diff |
BUG: Fix installation of Slicer.crt on MacOSX. Fixes 0004067 git-svn-id: http://svn.slicer.org/Slicer4/trunk@24658 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/CMakeLists.txt | Diff File | ||
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master 56643035 2015-10-23 15:24:42 Details Diff |
ENH: Update ITK to include latest backport to ITK release branche It includes the following additional changes: Bradley Lowekamp (3): BUG: Avoid potential exception in itk::Object::UnRegister BUG: Avoid null deference in PrintSelf with default construction BUG: Use const pointer in Set method for constant ReferenceImage ivar Davis Vigneault (2): DOC: Expanded Canny Edge Detection Example COMP: Warnings in FFTW Classes when compiling with c++11 Eugene Prilepin (1): BUG: Fix a template name formation in python wrappings Matthew McCormick (3): COMP: Remove unused argument in ConditionVariableNoThreads. DOC: Correct spelling of Continuous. STYLE: Use prefix increment operator in ImageBase. git-svn-id: http://svn.slicer.org/Slicer4/trunk@24657 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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master 64c075ae 2015-10-23 13:30:40 Details Diff |
BUG: 0004066 Editor threshold paint should have inclusive range See discussion here: http://www.na-mic.org/Bug/view.php?id=4066 From: Steve Pieper <pieper@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24656 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/EditorLib/Logic/vtkImageSlicePaint.cxx | Diff File | ||
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master 2241bfe9 2015-10-23 12:46:55 Details Diff |
ENH: Update ITK to backport ITKMGHIO tweaks A branch named "MGHIO_Remote_SlicerSync-for-release" has also been proposed to upstream ITK See http://review.source.kitware.com/#/q/topic:MGHIO_Remote_SlicerSync-for-release $ git shortlog 2eb422b..0786612 --no-merges Hans Johnson (5): ENH: Update Sphinx for ITK 4.8.0 COMP: Update to version for WikiExamples STYLE: Minor code style issues for MGHIO ENH: Update MGHIO to be shared lib BUG: Fix MGHIO to fix write failures git-svn-id: http://svn.slicer.org/Slicer4/trunk@24655 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
