Changesets: Import 2017-06-07 23:51:09
|
master c829548a 2014-03-03 09:38:14 Details Diff |
ENH: Adding SimpleITK Python threading, and progress/abort to SimpleFilters Enabling SimpleITK Python threading. This unlock the Python GIL while inside C++ code in ITK, while still having safe commands on events. Updated SimpleFilters with support for SimpleITK 0.8rc1, and adding a progress bar and abort button. $ git log --oneline 3bc2fdc5ca5c72b3fbfc596213eecf89cec31b32.. c939ce0 Update to use namespace KernelEnum types for morphology 34e55c9 Verify the update-sitk update branch does not exist before json update 5cb03ef Merge branch 'sitk-upstream' f46c414 SimpleITK 9f758175 Filter descriptions (reduced) 18db32e Adding Cancel button to abort filter processing. 757d0fe Adding ProgressBar and SimpleITK events From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22917 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild.cmake | Diff File | ||
| mod - SuperBuild/External_SimpleITK.cmake | Diff File | ||
|
master 9bab455e 2014-03-02 21:51:57 Details Diff |
BUG: Fixed various errors in the save scene dialog for mrb format There were 3 problems: 1. When the save scene dialog is shown first, the file format selector is empty 2. When a scene is saved as .mrb and then the save dialog is opened again the format is still .mrb, but the populated items are not disabled 3. When a scene is saved as .mrb and then the save dialog is opened again the target directory is not the same (it’s the parent directory of the directory where the scene was saved the last time) From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22916 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTGUI/qSlicerSaveDataDialog.cxx | Diff File | ||
|
master 4a6ca48f 2014-03-02 19:08:33 Details Diff |
COMP: C++11 convertsion of types error: no viable conversion from 'DiffusionTensor3DExtended<float>' to 'DiffusionTensor3DExtended<double>' By preferring initialization to assignment this error is avoided. From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22915 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DAbsCorrection.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DNearestCorrection.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DPPDAffineTransform.txx | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/itkDiffusionTensor3DZeroCorrection.h | Diff File | ||
|
master 7f23baf3 2014-03-02 19:08:31 Details Diff |
COMP: C++11 compiler warning convert NULL to bool warning: implicit conversion of NULL constant to 'bool' [-Wnull-conversion] From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22914 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Logic/vtkMRMLApplicationLogic.cxx | Diff File | ||
|
master ec4b62ea 2014-03-02 19:08:28 Details Diff |
COMP: C++11 conformance for static initialization error: non-constant-expression cannot be narrowed from type 'unsigned long' to 'IndexValueType' (aka 'long') in initializer list [-Wc++11-narrowing] as identifiied by the clang compiler. From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22913 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLVolumeNode.cxx | Diff File | ||
| mod - Libs/vtkITK/itkTimeSeriesDatabase.txx | Diff File | ||
| mod - Modules/Loadable/CropVolume/Logic/vtkSlicerCropVolumeLogic.cxx | Diff File | ||
|
master c8c39f43 2014-02-27 18:43:52 naucoin Details Diff |
BUG: reset table range for label map volumes Label map volumes need to be mapped to colors in the color look up table. For editing, don't allow procedurally defined color nodes to be chosen. Issue 0003586 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22912 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLLabelMapVolumeDisplayNode.cxx | Diff File | ||
| mod - Modules/Scripted/EditorLib/HelperBox.py | Diff File | ||
|
master da5665a8 2014-02-27 18:07:59 Details Diff |
COMP: Update VTK project to re-add support for additional call data types Following r22898, the version of VTK has been changed to use the branch named "slicer-release-5.10_2014-01-20". When initially created, it didn't include the improvement to the CallDataType support. This commit fixes this by including the following to commit into the SlicerVTK fork: $ git shortlog e7464be93..4e0ca68 Jean-Christophe Fillion-Robin (2): vtkPythonCommand - Add support for additional call data types vtkPythonCommand - Fix indent and variable names Note that this commit have already been contributed and integrated into VTK6. See http://review.source.kitware.com/#/t/3966 and https://github.com/Kitware/VTK/commit/3a2a3ce595daab0bc2a9f858ef593905fd77a9ce git-svn-id: http://svn.slicer.org/Slicer4/trunk@22911 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild/External_VTK.cmake | Diff File | ||
|
master 3c31ef5a 2014-02-27 09:19:13 Details Diff |
ENH: Associated hierarchy node with ChildNode(Added/Removed)Event It will now be easier to know which node has been added or removed from a given hierarchy. Still need to figure out which node to associated with the event 'ChildNodeRemovedEvent' invoked in function 'vtkMRMLHierarchyNode::RemoveHierarchyChildrenNodes' git-svn-id: http://svn.slicer.org/Slicer4/trunk@22910 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLHierarchyNode.cxx | Diff File | ||
|
master 0dc6eab3 2014-02-26 19:28:55 Details Diff |
COMP: ExternalProject_Add_Source - Do not create build directory Specify the 'BUILD_IN_SOURCE' argument to skip the creation of unwanted build directory. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22909 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - CMake/ExternalProjectAddSource.cmake | Diff File | ||
|
master 19b2f99d 2014-02-26 16:37:40 Details Diff |
ENH: update the versions of CompareVolumes and LandmarkRegistration Improved plugin support for plastimatch (SlicerRT) and also improved visualization via the RevealCursor and Rock modes. Also fix the tests by selecting the module at the start of the test (when running as a self test slicer starts with the default module). git-svn-id: http://svn.slicer.org/Slicer4/trunk@22908 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild.cmake | Diff File | ||
|
master 2bd7dc49 2014-02-26 14:25:38 Details Diff |
COMP: Simplify how BRAINSTools project options are specified Source repository, revision and associated CMake options are not all set in a single location. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22907 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/Remote/CMakeLists.txt | Diff File | ||
| mod - SuperBuild.cmake | Diff File | ||
|
master 6e1a3b46 2014-02-26 14:25:36 Details Diff |
ENH: Extend 'Slicer_RemoteModule_Add' to accept list of cache options When the VARS argument is set to a list of variable of the form: <name1>:<type1>=<value1> [<name2>:<type2>=<value2> [...]] For more details, see inlined documentation. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22906 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - CMake/ExternalProjectAddSource.cmake | Diff File | ||
|
master 18137e11 2014-02-26 14:25:35 Details Diff |
COMP: Do not force BRAINSTools options to ensure they can overwritten git-svn-id: http://svn.slicer.org/Slicer4/trunk@22905 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/Remote/CMakeLists.txt | Diff File | ||
|
master 54c55be0 2014-02-26 14:25:33 Details Diff |
COMP: Remove now obsolete patching of BRAINSTools ExternalData module Considering both projects now use the same version of the module, it is not required anymore to copy it. See the associated BRAINStools issue for more details: https://github.com/BRAINSia/BRAINSTools/issues/3 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22904 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/Remote/CMakeLists.txt | Diff File | ||
|
master 27df19da 2014-02-25 18:10:55 naucoin Details Diff |
BUG: get CLI module logic temp dir from application Resetting the temporary directory at the application settings level wasn't propagated to the CLI module logic. This change has the CLI module logic getting the temporary directory from the application as necessary. Issue 0003587 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22903 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTCLI/qSlicerCLIModule.cxx | Diff File | ||
| mod - Base/QTCLI/vtkSlicerCLIModuleLogic.cxx | Diff File | ||
| mod - Base/QTCLI/vtkSlicerCLIModuleLogic.h | Diff File | ||
|
master 0495d368 2014-02-25 17:53:02 Details Diff |
ENH: Update tag for OpenIGTLinkIF in response to issue 0003596. From: Junichi Tokuda <tokuda@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22902 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild.cmake | Diff File | ||
|
master 7425a1b6 2014-02-25 11:45:26 Details Diff |
BUG: fixed qSlicerTransformModuleWidget::Invert method and qSlicerTransformModuleWidget test. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22901 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/Loadable/Transforms/Testing/Cxx/qSlicerTransformsModuleWidgetTest.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/qSlicerTransformsModuleWidget.cxx | Diff File | ||
|
master 8b3ab5b2 2014-02-25 11:43:23 Details Diff |
BUG: fixed improper importing a series of dicom images. Fixes 0003386 From: Kevin Wang <kevin.wang@rmp.uhn.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22900 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx | Diff File | ||
|
master 538411a6 2014-02-25 09:51:07 Details Diff |
COMP: Updating SimpleITK to 0.8rc1 and SWIG to 2.0.12 This version of SimpleITK addresses compilation issue with clang 5.0 on OSX with libc++. SimpleITK will now automatically be compiled with "-std=c++11". From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22899 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild/External_SimpleITK.cmake | Diff File | ||
| mod - SuperBuild/External_Swig.cmake | Diff File | ||
|
master 3378d288 2014-02-25 09:51:05 Details Diff |
COMP: Update VTK external project to fix clang compilation issue A new branch named "slicer-release-5.10_2014-01-20" has been pushed to the Slicer VTK fork. It contains all the Slicer VTK specific commits rebased on top of the HEAD of the vtk 5.10 release branch available when this commit has done. The difference between the v5.10.1 and the head of the vtk 5.10 release branch are reported below. $ git shortlog d3b66526624ba8e55addcddb0ec28c40982473ac...v5.10.1 --no-merges David Cole (1): Rendering: Use AdjustWindowRect to ensure pixel perfect client size Goodwin Lawlor (6): Backport using Tcl_GetErrorLine with Tcl8.6 Let macro find TclTk version 8.6 Update the TclTk internal files for 8.6 Backport using Tcl_GetErrorLine with Tcl8.6 Let macro find TclTk version 8.6 Update the TclTk internal files for 8.6 Hans Johnson (1): COMP: Fix compiler error on clang c++11 Sean McBride (5): Conditionalize insane "#define inline" in libtiff COMP: fixed compilation error using llvm's libc++ COMP: fixed llvm libc++ build error by removing invalid 'operator<<' Fixed compile error with llvm libcxx added missing #include, fixing compiler error with llvm's libc++ From: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22898 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild/External_VTK.cmake | Diff File | ||
|
master 7c4fb9b3 2014-02-24 17:28:45 Details Diff |
COMP: Fix unused variable warnings. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22897 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLNonlinearTransformNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformStorageNode.cxx | Diff File | ||
| mod - Libs/MRML/Logic/vtkMRMLSliceLayerLogic.cxx | Diff File | ||
|
master 706b4835 2014-02-24 17:28:42 Details Diff |
ENH: Improve readability using vtkNew where possible In addition to be shorter, it simply conveys the idea of locally instantiating an object. Indeed, vtkNew allow to instantiate an object on the heap and deleting it when it goes out of scope if its reference count has not been incremented by either assigning the object to a smart pointer or calling Register. This commit continues the work initiated in commit r22539 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22896 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/Logic/vtkDataIOManagerLogic.cxx | Diff File | ||
| mod - Base/Logic/vtkSlicerTransformLogic.cxx | Diff File | ||
| mod - Base/QTCore/qSlicerSlicer2SceneReader.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLVolumeNode.cxx | Diff File | ||
| mod - Libs/MRML/Logic/vtkMRMLColorLogic.cxx | Diff File | ||
| mod - Libs/MRML/Logic/vtkMRMLSliceLayerLogic.cxx | Diff File | ||
| mod - Libs/MRML/Logic/vtkMRMLSliceLogic.cxx | Diff File | ||
|
master f05415af 2014-02-21 12:48:39 Details Diff |
ENH: Disable slice view reset (volume propagation) if CLI Autorun is enabled. Disable slice view reset (volume propagation) is important, because when we change a CLI parameter we want to keep all the carefully chosen slice view settings (background/foreground volume selection, slice selection, transparency, zoom, etc.). Before this change all the slice view settings had to be set again after each parameter change, which basically rendered the Autorun feature useless for modules with volume output. From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22895 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTCLI/vtkSlicerCLIModuleLogic.cxx | Diff File | ||
|
master fea51229 2014-02-21 10:58:08 Details Diff |
COMP: Remove redundant Error/Warning Ctest custom match expression. As of kitware/CMake@b2634b6aaor for any version of CMake >= v2.8.3, these expressions are already included in the default CTest list implemented in cmCTestBuildHandler.cxx See [1], [2] and [3] Co-authored-by: Christopher Mullins <christopher.mullins@kitware.com> Co-authored-by: Matt McCormick <matt.mccormick@kitware.com> [1] http://cmake.org/gitweb?p=cmake.git;a=commit;h=b2634b6aa3a0203e3a97060cf9e3206245a85080 [2] http://cmake.org/gitweb?p=cmake.git;a=blob;f=Source/CTest/cmCTestBuildHandler.cxx;h=c5deb964a38fe7ed37c08562112800b961788269;hb=HEAD#l70 [3] http://cmake.org/gitweb?p=cmake.git;a=blob;f=Source/CTest/cmCTestBuildHandler.cxx;h=c5deb964a38fe7ed37c08562112800b961788269;hb=HEAD#l136 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22894 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - CMake/CTestCustom.cmake.in | Diff File | ||
|
master a0fed207 2014-02-20 20:36:25 Details Diff |
ENH: Implemented GetMarkupIndexByID and GetMarkupByID methods From: Laurent Chauvin <lchauvin@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22893 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/Loadable/Markups/MRML/vtkMRMLMarkupsNode.cxx | Diff File | ||
| mod - Modules/Loadable/Markups/MRML/vtkMRMLMarkupsNode.h | Diff File | ||
| mod - Modules/Loadable/Markups/Testing/Cxx/vtkMRMLMarkupsNodeTest2.cxx | Diff File | ||
