Changesets: Slicer
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2145-support-for-installing-extension-from-file 03108897 2013-06-09 19:31:00 Details Diff |
COMP: Add install SimpleITK library to fixup into bundle _SimpleITK*.so has been added to the list of libraries to be fixed up in fixup_bundle_with_plugins method. It is also added to gp_item_default_embedded_path_override method, because ? From: Steve Pieper <pieper@isomics.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22092 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/SlicerCPackBundleFixup.cmake.in | Diff File | ||
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2145-support-for-installing-extension-from-file fcf8db81 2013-06-07 17:53:45 Details Diff |
BUG: fix fiducials display to preserve screenspace size This change compensates for the size of the slice view when displaying fiducial glyphs and text. Without this change, switching to a layout showing only a single slice would lead to humerously large fiducials being displayed. The base size can still be controlled via the display nodes. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22091 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationFiducialDisplayableManager.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 2ae9ee91 2013-06-07 14:18:32 Details Diff |
BUG: fixed module labels git-svn-id: http://svn.slicer.org/Slicer4/trunk@22090 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/FiberBundleLabelSelect/FiberBundleLabelSelect.xml | Diff File | ||
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2145-support-for-installing-extension-from-file f5df71d4 2013-06-07 12:35:01 Details Diff |
BUG: 3148. Fixed crash on transform node reparenting git-svn-id: http://svn.slicer.org/Slicer4/trunk@22089 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkMRMLModelSliceDisplayableManager.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 866bcb15 2013-06-07 12:32:08 Details Diff |
BUG: 3133. invoke TransformModifiedEvent when new TransformNode is set git-svn-id: http://svn.slicer.org/Slicer4/trunk@22088 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLTransformableNode.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 799630a4 2013-06-07 10:56:35 Details Diff |
ENH: 0003081 support drag-and-drop of dicom directories Use Julien's nice scripted file dialog code to support adding directories to the dicom database. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22087 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DICOM/DICOM.py | Diff File | ||
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2145-support-for-installing-extension-from-file 21696191 2013-06-06 16:59:58 Details Diff |
BUG: RSS label image type bug fixed previously char pixel type is used for input/output label images. but that is not enough for larger label values. this causes crash. I changed it to short type to hold more label values. Tested on previous fail cases and works now. Linux 64 From: Yi Gao <yi.gao@gatech.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22086 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/RobustStatisticsSegmenter/SFLSRobustStatSegmentor3DLabelMap_single.h | Diff File | ||
| mod - Modules/CLI/RobustStatisticsSegmenter/SFLSSegmentor3D.h | Diff File | ||
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2145-support-for-installing-extension-from-file 93063c62 2013-06-06 16:36:29 Details Diff |
COMP: fix swig executable path Conform to cmake script syntax limitations. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22085 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_Swig.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 8155b29a 2013-06-06 13:12:48 Details Diff |
COMP: fix swig build to match SimpleITK Use the same version and url that are known to work in SimpleITK's superbuild. Note: also remove "${${PROJECT_NAME}_EP_DISABLED_UPDATE}" and replace it with UPDATE_COMMAND "" as I believe this gives the same effect and avoids confusion about the intent. More importantly, on windows the empty cmake argument led to the addition of a semicolon to the directory name (so it became "swigwin-2.0.9;") which was ugly and confusing. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22084 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_Swig.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 026bbc6b 2013-06-05 20:28:21 Details Diff |
COMP: update Swig version and fix md5 hashes per Brad's suggestion Try to fix windows build errors like [1] by copying the version info and hashes from the SimpleITK source [2]. [1] http://slicer.cdash.org/viewBuildError.php?buildid=106147 [2] https://github.com/SimpleITK/SimpleITK/commit/331990f42c2f5777ccc9c849025bb2db68709a68 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22083 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_Swig.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 14ca1995 2013-06-05 17:57:39 Details Diff |
BUG: 0003029 use 'setlocale' to force C over native language It turns out that it is not enough to set Qt's locale and we must also set the c standard library locale in order to avoid data corruption when the decimalpoint is not period. Many thanks to Marine Clogenson of EPFL for noticing and helping figure out how to reproduce this issue! git-svn-id: http://svn.slicer.org/Slicer4/trunk@22082 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/qSlicerCoreApplication.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 92f217e8 2013-06-05 17:14:16 Details Diff |
BUG: check in a new baseline for Multiresolution Affine cli test This result is based on the module running with ITKv4 and shows a slight shift compared to the old baseline, which is probably due to improved subpixel indexing in the newer version of ITK. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22081 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/MultiResolutionAffineRegistration/Data/Baseline/MultiResolutionAffineRegistrationTest.nrrd | Diff File | ||
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2145-support-for-installing-extension-from-file f7ae258f 2013-06-05 16:42:50 Details Diff |
BUG: try to fix test failures on some platforms This test was failing on the windows factory machines but not on non-windows. Possibly this is due to the window size or another related variable causing the painting to happen outside the visible region of the MR in the slice view. This change makes sure the clicks occur near the center of the slice view so as to avoid the boundary case. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22080 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/Testing/Python/sceneImport2428.py | Diff File | ||
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2145-support-for-installing-extension-from-file 80be47d3 2013-06-05 16:26:52 Details Diff |
ENH: add example of manipulating contents of web view In this example the qt qpi is used to manipulate the DOM of a loaded web page. In this case, we add a search string into a form, but the concept could be generalized to allow exchange of data between slicer and any web-based system that doesn't expose a clean web services api. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22079 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/PerformanceTests/PerformanceTests.py | Diff File | ||
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2145-support-for-installing-extension-from-file 9ead17b2 2013-06-04 17:51:27 Details Diff |
BUG: Delete unnecessary Q_ASSERT in unit aware widgets These asserts were added with the slicer normal context of execution in mind. In this case a scene should have a selection node at all time. However, in tests that is not the case. Since the code is already acounting for the fact that there might not be a selection node (see updateWidgetFromUnitNode()), the asserts can just be removed. See Issue 0003143 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22078 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLCoordinatesWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLSliderWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLSpinBox.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 563bd9d7 2013-06-04 17:23:22 Details Diff |
ENH: add shortcuts for module navigation Per discussion on developer hangout, added a shortcut: Cmd/Control+F : search for module Then I decided to add these as well: Cmd/Control+Left : previous module Cmd/Control+Right : next module git-svn-id: http://svn.slicer.org/Slicer4/trunk@22077 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/qSlicerModuleSelectorToolBar.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 68ce112e 2013-06-04 15:56:28 Details Diff |
BUG: Fixed crash on missed fiber selection git-svn-id: http://svn.slicer.org/Slicer4/trunk@22076 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/TractographyDisplay/MRMLDM/vtkMRMLTractographyDisplayDisplayableManager.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file edb07a87 2013-06-04 15:31:29 Details Diff |
BUG: Fix MRMLScene import and export In the selection node, the unit didn't add a NodeReferenceMRMLAttributeNames for each of its reference role. These attributes are used when saving the mrml scene to describe what the reference role is used for. Most notably, this can be used when importing a scene. However, since there wasn't any defined for the selection node, a saved scene would look like this: ... selected="false" ="vtkMRMLUnitNodeApplicationLength" "vtkMRMLUnitNodeApplicationTime" activeVolumeID="NULL" ... Which is an invalid format for the scene. Adding a NodeReferenceMRMLAttributeNames is usually done in the class constructor. In our case, we assume that we don't know what kind of unit quantity can be added. Thus we don't know the ReferenceRoles we will need at constructor time. So we add theses roles in the SetUnitNodeID(). The roles names are based on the quantity, and aren't actually used anywhere. To make sure this works, a test opening Slicer, saving a scene and loading it again is added. See Issue 0003145 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22075 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/Testing/Python/CMakeLists.txt | Diff File | ||
| add - Applications/SlicerApp/Testing/Python/MRMLSceneImportAndExport.py | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLSelectionNode.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file db75d3d5 2013-06-04 11:17:13 Details Diff |
BUG: 0003029 force slicer to be in the C locale to avoid data truncation Set the locale to be "C" to avoid issues related to reading and writing of floating point numbers. For example, when the decimal point is set to be a comma instead of a period, there can be truncation of data. See these previous commits and the + // http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=21856 + // http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=21865 + // http://slicer-devel.65872.n3.nabble.com/Re-Rounding-to-integer-tt4027985.html + // http://slicer-devel.65872.n3.nabble.com/Re-slicer-users-Slicer4-can-t-really-use-it-yet-td4028040.html + // http://slicer-users.65878.n3.nabble.com/Slicer4-DICOM-many-problems-td4025919.html + // and issue 0003029 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22074 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/qSlicerCoreApplication.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file d1b20980 2013-06-04 11:14:06 Details Diff |
BUG: 3141. Added heck for NULL LUT. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22073 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLColorTableStorageNode.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 80e14437 2013-06-03 15:45:21 Details Diff |
BUG: Ensure backward compatibility in qMRMLNodeComboBox Here is a quick summary of what happened: What changed in r22052: Rename the Q_Property from currentNodeId to currentNodeID Rename QString currentNodeId() to QString currentNodeID() Rename setCurrentNode(const QString nodeID) to setCurrentNodeID(const QString nodeID) What changed in r22059: Add QString currentNodeId() as a deprecated function (not invokable though) What is broken after r22052 and r22059 ?: In C++, the function setCurrentNode(const QString nodeID) is missing. In Python: The function currentNodeId() is missing (not wrapped due to a missing Q_INVOKABLE). Trickier, any code using the property currentNodeId = ... will break too. What this commit intend to fix: Add Q_INVOKABLE to currentNodeId() method for python wrapping. Return the old property as deprecated. Also adding warning in the deprecated function to warn other developers. See Issue 0001694 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22072 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLNodeComboBox.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLNodeComboBox.h | Diff File | ||
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2145-support-for-installing-extension-from-file 495bc7cc 2013-06-03 15:17:58 Details Diff |
ENH: provide direct access to tensor arrays from python git-svn-id: http://svn.slicer.org/Slicer4/trunk@22071 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/util.py | Diff File | ||
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2145-support-for-installing-extension-from-file 6a2c70ae 2013-05-31 12:46:45 Details Diff |
ENH: moved Enable Tracks button to the top git-svn-id: http://svn.slicer.org/Slicer4/trunk@22070 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/TractographyInteractiveSeeding/Resources/UI/qSlicerTractographyInteractiveSeedingModuleWidget.ui | Diff File | ||
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2145-support-for-installing-extension-from-file a682daef 2013-05-31 12:26:47 Details Diff |
ENH: put more checks into fiber editing git-svn-id: http://svn.slicer.org/Slicer4/trunk@22069 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/TractographyDisplay/MRMLDM/vtkMRMLTractographyDisplayDisplayableManager.cxx | Diff File | ||
| mod - Modules/Loadable/TractographyDisplay/Widgets/qSlicerTractographyDisplayModuleWidget.cxx | Diff File | ||
| mod - Modules/Loadable/TractographyDisplay/Widgets/qSlicerTractographyDisplayModuleWidget.h | Diff File | ||
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2145-support-for-installing-extension-from-file 2aba3246 2013-05-31 08:15:30 Details Diff |
BUG: fixed fiber editing for multiple bundles git-svn-id: http://svn.slicer.org/Slicer4/trunk@22068 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/TractographyDisplay/MRMLDM/vtkMRMLTractographyDisplayDisplayableManager.cxx | Diff File | ||
| mod - Modules/Loadable/TractographyDisplay/MRMLDM/vtkMRMLTractographyDisplayDisplayableManager.h | Diff File | ||
