Changesets: Slicer
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2145-support-for-installing-extension-from-file 757fcc4f 2013-07-11 08:17:06 Details Diff |
BUG: Fix VolumeProperty file reading with gcc < 4.2.2 http://gcc.gnu.org/bugzilla/show_bug.cgi?id=35397 Closes 0003220 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22167 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/VolumeRendering/Testing/Cxx/vtkMRMLVolumePropertyNodeTest1.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file b91fba2c 2013-07-10 21:47:42 Details Diff |
ENH: load the module even if numpy is missing; addresses issue raised by JC git-svn-id: http://svn.slicer.org/Slicer4/trunk@22166 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_MultiVolumeImporter.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 3c3da1e6 2013-07-10 14:52:50 Details Diff |
ENH: Updating SimpelITK version to 0.7.0.dev54 This update to SimpleITK includes the following: Fix for mantis 3157 Improved compilation time with parallelism Improved VS9 compiler check Windows numpy size conversions fix Additional tweaks to external file include: Adding cmake flag to remove git hash for version. Adding cmake variables for git tag and url. Consistent with ITKv4 external project description. Remove extra CMake module include Remove obsolete comment regarding unsupported shared library build. See r22133 [1] [1] http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=22133 From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22165 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_SimpleITK.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 2ac2da0c 2013-07-10 14:42:10 Details Diff |
BUG: Manually download distribute required for SimpleITK Download distribute version required by SimpleITK's build directory to be automatically detected by distribute_setup.py. The distribute download from pipy has moved to a https URL. SSL is not yet supported by Slicer's version of python. So we moved the download to midas and manually get it. From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22164 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/SimpleITK_install_step.cmake.in | Diff File | ||
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2145-support-for-installing-extension-from-file 552f2cbe 2013-07-10 13:53:17 Details Diff |
BUG: Fix origin&directions in CreateADICOMSeries - Update ITKv4 project This problem is captured by issue 0002945 and the associated fix has been pushed to ITK master. During developer hangout of July 9th 2013, we discussed [1] what could be the approach to build against a version of ITK including commit df661440 without risking to break Slicer including new ITKv4 feature. We concluded that working with ITK maintainers so that a patch release ITK v4.4.1 including a list of carefully selected [2] commits is created was the most reasonable approach. Doing so ensures that only bug fixes are considered in the updated version of ITK build by Slicer. This commit update the ITKv4 external project so that the release branch that will soon become ITKv4.4.1 is considered. More particularly it include commit 9fa55c [3] fixing Slicer issue 0002945 Fixes 0002945 Co-authored-by: Matt McCormick <matt.mccormick@kitware.com> [1] http://www.slicer.org/slicerWiki/index.php/Developer_Meetings/20130709#Conclusion [2] http://www.itk.org/pipermail/insight-developers/2013-July/022922.html [3] http://itk.org/gitweb?p=ITK.git;a=commit;h=9fa55c414d9000e467a57415329436e76356bebb git-svn-id: http://svn.slicer.org/Slicer4/trunk@22163 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 2748442a 2013-07-09 19:00:39 Details Diff |
BUG: 0002326 remove storage nodes for sample data downloads Since the download is in a temp directory, make sure the user is prompted to save when saving the scene. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22162 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/SampleData/SampleData.py | Diff File | ||
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2145-support-for-installing-extension-from-file a1399ef4 2013-07-09 18:37:39 Details Diff |
BUG: enable reading of GE DWI trace multi-volumes, which was not possible to properly read using any existing functionality of Slicer git-svn-id: http://svn.slicer.org/Slicer4/trunk@22161 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_MultiVolumeImporter.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 78f190eb 2013-07-09 10:19:06 Details Diff |
ENH: 0001879 hotkeys to cycle through volumes Added left/right bracked [ and ] to cycle through background layer and left/right brace { and } to cycle through foreground layer. Label layer is not included since labels can be seen in foreground layer. Also remove some trailing spaces for sytle purposes. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22160 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkSliceViewInteractorStyle.cxx | Diff File | ||
| mod - Libs/MRML/DisplayableManager/vtkSliceViewInteractorStyle.h | Diff File | ||
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2145-support-for-installing-extension-from-file 6fbf3be9 2013-07-09 09:48:12 Details Diff |
ENH: Add depth peeling option in 3D view controller Closes 0001798 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22159 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLViewNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLViewNode.h | Diff File | ||
| mod - Libs/MRML/Widgets/Resources/UI/qMRMLThreeDViewControllerWidget.ui | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLThreeDView.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLThreeDViewControllerWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLThreeDViewControllerWidget.h | Diff File | ||
| mod - SuperBuild/External_CTK.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 095c21fd 2013-07-09 08:42:05 Details Diff |
BUG: setting inputs to NULL when selectors not initialized; attempt to fix 3117 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22158 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/CropVolume/qSlicerCropVolumeModuleWidget.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file bd672b04 2013-07-09 08:41:24 Details Diff |
ENH: 0001930 Don't scroll past edges of volumes Now the arrow keys and mouse wheel events are clamped to the range of the volumes in the z direction of the slice views like the view controller's sliders are. This prevents 'runaway' scrolling and losing the slice. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22157 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkSliceViewInteractorStyle.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 550536af 2013-07-08 23:35:59 Details Diff |
BUG: --inputimage and --outputimage are absolute flags of N4ITKBiasFieldCorrection git-svn-id: http://svn.slicer.org/Slicer4/trunk@22156 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_EMSegment.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 6d24918a 2013-07-08 18:41:31 Details Diff |
BUG: adding self-test in an attempt to reproduce the crash in issue 3117 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22155 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/CropVolume/Testing/CMakeLists.txt | Diff File | ||
| add - Modules/Loadable/CropVolume/Testing/Python/CMakeLists.txt | Diff File | ||
| add - Modules/Loadable/CropVolume/Testing/Python/CropVolumeSelfTest.py | Diff File | ||
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2145-support-for-installing-extension-from-file 6fb0bf4e 2013-07-08 18:03:28 Details Diff |
COMP: Fix python build error occurring when using VisualStudio with Ninja This has been tested on Visual Studio 2008, 2012, and 2012+Ninja See https://github.com/davidsansome/python-cmake-buildsystem/pull/23 From: Isaiah Norton <inorton@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22154 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_python.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 9f751a16 2013-07-08 16:29:07 Details Diff |
BUG: Disable auto enabling for qMRMLCoordinatesWidget The dimension coordinate widget in Volumes should stay disabled. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22153 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLCoordinatesWidget.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file b07ba5a9 2013-07-08 16:29:05 Details Diff |
ENH: Add control over decimals in Transforms module Closes 0002480, 0002579 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22152 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/Resources/UI/qMRMLTransformSliders.ui | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLTransformSliders.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLTransformSliders.h | Diff File | ||
| mod - Modules/Loadable/Transforms/Resources/UI/qSlicerTransformsModuleWidget.ui | Diff File | ||
| mod - SuperBuild/External_CTK.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 5a66cba4 2013-07-08 16:29:02 Details Diff |
ENH: Give user control over the number of decimals in spinboxes Adding decimals is now possible in spinboxes. Note that this work is orthogonal to units but not incompatible. Closes 0002973, 0002986 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22151 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCLI/qSlicerCLIModuleUIHelper.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/Resources/UI/qMRMLVolumeInfoWidget.ui | Diff File | ||
| mod - Libs/MRML/Widgets/Resources/UI/qMRMLWindowLevelWidget.ui | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLSliceControllerWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLVolumeThresholdWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLVolumeWidget.cxx | Diff File | ||
| mod - SuperBuild/External_CTK.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 2ef7ff56 2013-07-08 15:39:40 Details Diff |
BUG: 0002203 better instructions for Endoscopy module The module's help and wiki page have been updated to better describe the use of the module. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22150 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/Endoscopy/Endoscopy.py | Diff File | ||
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2145-support-for-installing-extension-from-file 67e67251 2013-07-08 15:02:38 Details Diff |
ENH: 0001419 show scene path in DataProbe We could consider someday moving this information to the mainWindow with the setWindowTitle method. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22149 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DataProbe/DataProbe.py | Diff File | ||
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2145-support-for-installing-extension-from-file 03398b3c 2013-07-08 13:02:45 Details Diff |
BUG: 0002948 save updated MRB file name for next save step The URL instance variable of the scene is used to store the source / destination of the scene, so it needs to be set for use as the default for the next save operation. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22148 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Data/qSlicerSceneWriter.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file c522374e 2013-07-08 13:02:43 Details Diff |
ENH: 0002543 small changes to documentation for FiberBundleToLabelMap Clean up the documentation and improve the display of the name. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22147 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/FiberBundleToLabelMap/FiberBundleToLabelMap.py | Diff File | ||
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2145-support-for-installing-extension-from-file 8338e2e5 2013-07-08 08:59:57 Details Diff |
BUG: 0003014 fix failing MRB condition where . was missing from extension This is a follow on fix for r22143 to handle the case where the filename already has the correct extension. Before this fix a situation could arise where the filename would be something like ".nrrdnrrd" and so it would fail to save. Now it is correctly saved as ".nrrd". git-svn-id: http://svn.slicer.org/Slicer4/trunk@22146 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Logic/vtkMRMLApplicationLogic.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 41f5c2c1 2013-07-06 12:54:28 Details Diff |
BUG: select the loaded multivolume on import, to be consistent with other plugins; resolves 0002844 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22145 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_MultiVolumeImporter.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file ff474864 2013-07-06 00:17:29 Details Diff |
COMP: Enable MultiVolumeImporter only if Numpy support is enabled Since the module depends on numpy, excluding the module will avoid startup error when the module is loaded when numpy support is disabled. A better approach could consist in teaching the module how to detect if numpy is available and fail graciously by reporting a warning. A issue has been reported upstream. See https://github.com/fedorov/MultiVolumeImporter/issues/6 Co-authored-by: Chrystel Juan <chrystel.juan@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22144 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file d1ea56a5 2013-07-05 12:59:05 Details Diff |
BUG: 0003014 fix databundle save/restore for dicom volumes Fix a hole in the logic where a dicom volume would have a storage node allocated, but the storage type would not be correctly defined so the temp save path would not work. Plus the default name would be set to an invalid filename since dicom volume nodes have a colon in the string by default. Now these files are given a default extension type (.nrrd for scalar volumes) and the names are percent-encoded to avoid bad file name issues. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22143 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Logic/vtkMRMLApplicationLogic.cxx | Diff File | ||
