Changesets: Slicer
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2145-support-for-installing-extension-from-file a665ca8a 2013-09-21 22:44:49 Details Diff |
ENH: Skip loading of loadable python module if loadable module are disabled Before this commit even after disabling the loading of loadable module the python module corresponding to "logic", "Widgets, "displayable manager" and "mrml" where still imported. This commit prevent this. Note that if a given loadable module is disabled with the application settings the associated python modules will still be imported. Ideally python module should be imported on a per module basis as it is done for extension. This will be possible only after python module specific to a loadable module are located in dedicated directory. This is somewhat related to issue 0001365 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22463 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/moduledm/__init__.py | Diff File | ||
| mod - Base/Python/slicer/modulelogic/__init__.py | Diff File | ||
| mod - Base/Python/slicer/modulemrml/__init__.py | Diff File | ||
| mod - Base/Python/slicer/modulewidget/__init__.py | Diff File | ||
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2145-support-for-installing-extension-from-file 815612f6 2013-09-20 19:42:39 Details Diff |
BUG: avoid python error messages when path is not yet set in Endoscopy This is triggered by some signals being emitted during the building of the module widget. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22462 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/Endoscopy/Endoscopy.py | Diff File | ||
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2145-support-for-installing-extension-from-file 679c35a0 2013-09-20 12:57:21 Details Diff |
BUG: 3404. Check invalid label range in the Logic that seeds fibers rather than in the parameter node. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22461 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/TractographyInteractiveSeeding/Logic/vtkMRMLTractographyInteractiveSeedingNode.cxx | Diff File | ||
| mod - Modules/Loadable/TractographyInteractiveSeeding/Logic/vtkSlicerTractographyInteractiveSeedingLogic.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 7dbc9258 2013-09-20 10:01:27 Details Diff |
BUG: 3403. Fixed logic for AND operation in FiberBundleLabelSelect module git-svn-id: http://svn.slicer.org/Slicer4/trunk@22460 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/FiberBundleLabelSelect/FiberBundleLabelSelect.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 3e9d0a8c 2013-09-19 15:41:11 Details Diff |
ENH: added new functionality - see detailed message in Slicer3 commit r17037 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22459 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_EMSegment.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 28f59f77 2013-09-19 13:43:30 naucoin Details Diff |
BUG: fix crash on exit for py_MarkupsSceneViewRestoreTestManyLists On some runs of the py_MarkupsSceneViewRestoreTestManyLists test, the volume rendering displayable manager would trigger a segmentation fault when it was being deleted on exit. It came from requesting a render after setting and observing the NULL displayable node. Added a test for a null node and if true don't request a render. Tested via the GUI and ran the volume rendering tests. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22458 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkMRMLAbstractDisplayableManager.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 0311b046 2013-09-18 20:15:06 Details Diff |
COMP: Easier extension build checking environment for midas_package_* vars When doing extension experimental build, having to systematically passing the option -DMIDAS_PACKAGE_EMAIL:STRING=<email> and -DMIDAS_PACKAGE_API_KEY:STRING=<api_key> was tedious. After this commit, the build system will first check if corresponding variables are set in the environment. On unix system, the variables could be set in the ~/.bash_aliases file using the following syntax: export MIDAS_PACKAGE_EMAIL=YOUR_EMAIL export MIDAS_PACKAGE_API_KEY=YOUR_API_KEY On windows, you could follow these instructions: http://www.nextofwindows.com/how-to-addedit-environment-variables-in-windows-7/ git-svn-id: http://svn.slicer.org/Slicer4/trunk@22457 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/UseSlicer.cmake.in | Diff File | ||
| mod - Extensions/CMake/CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file ba0f39d5 2013-09-18 15:00:44 Details Diff |
BUG: All my tests now pass and resolves 0003381 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22456 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_EMSegment.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file a655167b 2013-09-18 12:19:17 Details Diff |
COMP: Fix launch of Slicer-real on MacOSX adding rpath to libarchive Fixes 0003189 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22455 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_LibArchive.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 05751cc8 2013-09-17 23:21:57 Details Diff |
COMP: Fix superbuild when using Xcode 5.0 or Xcode 5.0 command line tools Xcode no longer ships with MacOSX10.7.sdk (or earlier) from version 5.0, which is the most recent version specified in CMake/SlicerBlockSetCMakeOSXVariables.cmake. Therefore the superbuild fails when attempted to build Python and NumPy due to a missing version number or SDK location. Manually setting CMAKE_OSX_DEPLOYMENT_TARGET to 10.8 and CMAKE_OSX_SYSROOT to ${SDK_ROOT}/MacOSX10.8.sdk or editing SlicerBlockSetCMakeOSXVariables.cmake fixes the issue. Fixes 0003402 From: Jamie Snape <jamie.snape@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22454 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/SlicerBlockSetCMakeOSXVariables.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 4731372f 2013-09-16 23:55:43 Details Diff |
BUG: Fix Slicer crash on DTIVolume reload after scene is closed. Handle the case when newVolumeDispalyNode is NULL in setMRMLVolumeNode(). Fixes 0003380 From: Yuzheng Zhou <yuzheng.zhou@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22436 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Volumes/Widgets/qSlicerDiffusionTensorVolumeDisplayWidget.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file a76dd488 2013-09-16 22:57:24 Details Diff |
BUG: Fix EMSegment test "EMSeg_MRML_DiffReadWriteNodes" Update EMSegment project to account for backward incompatible changes made in r22310 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22435 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_EMSegment.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file fb8e315d 2013-09-16 20:59:15 Details Diff |
COMP: Fix CTKConfig.cmake to properly set _{LIBRARY,INCLUDE}_DIRS variable For example, within CTKConfig.cmake: * Before this commit: [...] set(CTKVisualizationVTKCore_LIBRARY_DIRS "VTK_LIBRARY_DIRS;/path/to/VTK-build/bin") [...] set(CTKVisualizationVTKWidgets_INCLUDE_DIRS [...] "/path/to/CTK-build/Libs/Core;" "/path/to/CTK/Libs/Visualization/VTK/Core; "/path/to/CTK-build/CTK-build/Libs/Visualization/VTK/Core;" "VTK_INCLUDE_DIRS;" "/path/to/VTK-build;" "/path/to/VTK-build/Common;" [...] ) * After this commit: [...] set(CTKVisualizationVTKCore_LIBRARY_DIRS "/path/to/VTK-build/bin") [...] set(CTKVisualizationVTKWidgets_INCLUDE_DIRS [...] "/path/to/CTK-build/Libs/Core;" "/path/to/CTK/Libs/Visualization/VTK/Core; "/path/to/CTK-build/CTK-build/Libs/Visualization/VTK/Core;" "/path/to/VTK-build;" "/path/to/VTK-build/Common;" [...] ) git-svn-id: http://svn.slicer.org/Slicer4/trunk@22434 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_CTK.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file c3122a09 2013-09-16 16:18:14 naucoin Details Diff |
BUG: fix error on start up from SurfaceToolbox Add in import string to fix start up error when trying to load the SurfaceToolbox scriptable module: Traceback (most recent call last): File "/projects/birn/nicole/Slicer42/Slicer4-SuperBuild-Debug/Slicer-build/lib/Slicer-4.3/qt-scripted-modules/SurfaceToolbox.py", line 11, in __init__ parent.helpText = string.Template(""" NameError: global name 'string' is not defined git-svn-id: http://svn.slicer.org/Slicer4/trunk@22433 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/SurfaceToolbox/SurfaceToolbox.py | Diff File | ||
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2145-support-for-installing-extension-from-file 9b613a9e 2013-09-13 18:36:00 naucoin Details Diff |
BUG: finish steps for the Neurosurgical Planning Tutorial Added the editor steps and label map seeding. Added the screen capture functionality to the template file. Issue 0003328 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22432 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Extensions/Testing/ScriptedLoadableExtensionTemplate/ScriptedLoadableModuleTemplate/ScriptedLoadableModuleTemplate.py | Diff File | ||
| mod - Modules/Loadable/Markups/Testing/Python/NeurosurgicalPlanningTutorialMarkupsSelfTest.py | Diff File | ||
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2145-support-for-installing-extension-from-file 66471e81 2013-09-13 14:47:10 naucoin Details Diff |
BUG: add missing StartPlaceMode method Laurent's extension was using the Annotation module logic StartPlaceMode call and it wasn't working. Added it to Markups logic and debugged it to work to set the mouse mode to place Markup fiducials. Added a return boolean to check success. Updated testing. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22431 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Markups/Logic/vtkSlicerMarkupsLogic.cxx | Diff File | ||
| mod - Modules/Loadable/Markups/Logic/vtkSlicerMarkupsLogic.h | Diff File | ||
| mod - Modules/Loadable/Markups/Testing/Cxx/vtkSlicerMarkupsLogicTest1.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file ffbef7d5 2013-09-12 17:57:38 Details Diff |
COMP: Allow extension to easily use "SlicerMacroExtractRepositoryMacro" As consequence the code within the Reporting will be simplified and duplicated macro will be removed. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22430 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/UseSlicer.cmake.in | Diff File | ||
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2145-support-for-installing-extension-from-file 445008df 2013-09-12 17:57:36 Details Diff |
BUG: Set module name / objectName in GenericTests In addition to be consistent with what is done in the "instantiateModule" method of the "qSlicerAbstractModuleFactoryManager". It also ensure that the "ModuleShareDirectory" set in the "logic" method of the "qSlicerAbstractCoreModule" class is done using the expected value for the module name. This will allow generic tests instantiating module using "GetModuleShareDirectory" method to get the correct value (i.e Reporting module) git-svn-id: http://svn.slicer.org/Slicer4/trunk@22429 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/Testing/Cxx/qSlicerModuleGenericTest.cxx.in | Diff File | ||
| mod - Base/QTGUI/Testing/Cxx/qSlicerModuleWidgetGenericTest.cxx.in | Diff File | ||
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2145-support-for-installing-extension-from-file a52bdf66 2013-09-11 18:54:41 Details Diff |
COMP: Simplify editor extension template This is a follow up of commit r22067 [1] where it should have been done as described in r22063 [2]. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22428 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Extensions/Testing/EditorExtensionTemplate/CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file 323d9a4c 2013-09-11 18:54:39 Details Diff |
COMP: Update Editor extension template to use scripted module macro Discussion: http://slicer-devel.65872.n3.nabble.com/Issues-with-Editor-effect-extension-td4029730.html Fixes 0003392 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22427 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Extensions/Testing/EditorExtensionTemplate/EditorEffectTemplate/CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file 1de0ecd8 2013-09-11 18:18:00 Details Diff |
BUG: Add close button to "About dialog". Fixes 0003172 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22426 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/Resources/UI/qSlicerAppAboutDialog.ui | Diff File | ||
| mod - Applications/SlicerApp/qSlicerAppAboutDialog.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 302b3eeb 2013-09-10 23:20:18 Details Diff |
BUG: Fix memory mgt in PythonQt, ENH: Config of dicom log level from python // --------------------------------------- CTK Commits: Author: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> Date: Tue Sep 10 04:27:56 2013 -0400 Re-factor ctkDICOMUtil to be consistent with ctkUtil Add the methods dicomLogLevel and setDICOMLogLevel to "ctk" namespace Update PythonQt external project to include fix allowing to wrap QFlags. The DICOM log level can be set from python doing: >>> import ctk >>> ctk.ctk.dicomLogLevel() 16 >>> ctk.ctk.dicomLogLevelAsString() u'Info' >>> ctk.ctk.setDICOMLogLevel(ctk.ctkErrorLogLevel.Critical) >>> ctk.ctk.dicomLogLevel() 256 >>> ctk.ctkErrorLogLevel.logLevelAsString(ctk.ctk.dicomLogLevel()) u'Critical' >>> ctk.ctkErrorLogLevel.logLevelAsString(32) u'Warning' >>> ctk.ctk.setDICOMLogLevel(64) >>> ctk.ctk.dicomLogLevelAsString() u'Error' commit 637da4b68ed93741a4c8cf73b406d66986dbe864 Author: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> Date: Tue Sep 10 04:12:10 2013 -0400 Define ctkErrorLogLevel::logLevelAsString as static for easier re-use Explicitly add associated decorator. See code comment for explanation. commit 8542108ef7d15a39d4d302aa64f4ecc2d15bf3e5 Author: Isaiah Norton <inorton@bwh.harvard.edu> Date: Wed Aug 28 11:20:31 2013 -0400 Add ctkDICOMUtil and ::setDICOMLogLevel helper This function allows to set the DICOM log level for diagnostic purposes. // --------------------------------------- PythonQt commits: commit e1f1c77d9675c3c5fb1cba19d2a32ace483eda2c Author: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> Date: Tue Sep 10 02:49:23 2013 -0400 Revert part of r91 preventing QFlags from being wrapped By checking if an enum member has already been cached it is not required anymore to skip it if is a QFlags. Additionally, the wrapping of QFlags can now be done by using only Q_FLAGS without having a corresponding Q_ENUMS. commit 5d5600c4d3134e69b51442a58b58e14c7fd47e54 Author: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> Date: Tue Sep 10 02:36:26 2013 -0400 Add CMake testing support Disabled by default to keep behavior consistent with previous CMake'ified version. [...] commit 7af5c8a4d2194db388ac67f340e3f555e02fea78 Author: florianlink <florianlink@ea8d5007-eb21-0410-b261-ccb3ea6e24a9> Date: Wed Jul 3 14:54:20 2013 +0000 improved wrapper check to avoid crashes on virtual methods while python object gets deleted git-svn-id: http://svn.code.sf.net/p/pythonqt/code/trunk@245 ea8d5007-eb21-0410-b261-ccb3ea6e24a9 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22425 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_CTK.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 02aafa88 2013-09-10 16:19:28 naucoin Details Diff |
STYLE: update Annotatons module documentation for 4.3 Removed references to fiducials as they've been moved into the Markups module. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22424 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Annotations/Documentation/Annotations.xml | Diff File | ||
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2145-support-for-installing-extension-from-file 85233d50 2013-09-10 12:18:02 naucoin Details Diff |
BUG: Fix missing conversion of fiducials in scene views Annotation fiducials in scene view scenes were coming up as unsaved in the Save data dialog when loaded from a scene with scene views where only the current scene had had it's fiducials conerted to markups. This was due to the change Alex made to save data that only appears in scene views, so added in iterating over the current scene and scene views when converting fiducials. Added in looking for end scene restore events in the GUI so that it will be updated properly even if there wasn't an active place node id in the saved scene view. Expanded the AddNewFiducialNode method to support adding to a passed in scene so that the converted markups can be added to the scene view scenes. Issue 0003296 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22423 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Markups/Logic/vtkSlicerMarkupsLogic.cxx | Diff File | ||
| mod - Modules/Loadable/Markups/Logic/vtkSlicerMarkupsLogic.h | Diff File | ||
| mod - Modules/Loadable/Markups/qSlicerMarkupsModuleWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Markups/qSlicerMarkupsModuleWidget.h | Diff File | ||
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2145-support-for-installing-extension-from-file 9b7e0253 2013-09-10 12:11:17 naucoin Details Diff |
BUG: fixing a Markups merge error for the active place node The more general activePlaceNodeID is to be used instead of a specific Annotations or Markups variable name. Fixed while working on issue 0003296 for the 4.3.1 release. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22422 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLSelectionNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLSelectionNode.h | Diff File | ||
