Changesets: Slicer

2145-support-for-installing-extension-from-file 63f9877f

2013-10-31 00:50:40

jcfr

Details Diff
ENH: Update vtkMRMLNodeTest1 to display error on standard error.

From: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22660 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/Testing/vtkMRMLNodeTest1.cxx Diff File

2145-support-for-installing-extension-from-file 2080e019

2013-10-30 16:25:31

naucoin

Details Diff
BUG: update link to LiverData.mrb

Fixed the scene file to show the model hierarchies and uploaded
a new mrb file to midas at
http://slicer.kitware.com/midas3/download?items=117033

Issue 0003469



git-svn-id: http://svn.slicer.org/Slicer4/trunk@22659 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Testing/Python/RSNA2012Vis.py Diff File

2145-support-for-installing-extension-from-file 8dfa1ac4

2013-10-30 14:52:27

jcfr

Details Diff
BUG: Ensure python script argument are not loaded as image. Fixes 0003463

Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>

From: Felix Veysseyre <felix.veysseyre@kitware.com>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22658 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTCore/qSlicerCoreApplication.cxx Diff File

2145-support-for-installing-extension-from-file ff5f5a86

2013-10-30 12:59:30

jcfr

Details Diff
COMP: Fix MacOSX build issue when building against Qt 4.7.4. Fixes 0003471

Since "QSysInfo::MV_10_8" has been first introduced in Qt 4.8.3,
exclude the fix for issue 0003460 introduced in commit r22641.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22657 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Main.cxx Diff File

2145-support-for-installing-extension-from-file 85562223

2013-10-30 11:17:18

jcfr

Details Diff
BUG: Simplify logic in (Start|End)SliceNodeInteraction method

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22656 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Logic/vtkMRMLSliceLogic.cxx Diff File

2145-support-for-installing-extension-from-file 4926aeae

2013-10-30 11:17:16

jcfr

Details Diff
BUG: Fix missing (Interaction|Selection)Node in qMRMLSliceWidget test

Full name of the test is: qMRMLSliceWidgetEventTranslatorPlayerTest1

The following warning was reported:
//-----------
Warning: In /path/to/Slicer/Libs/MRML/DisplayableManager/vtkMRMLAbstractDisplayableManager.cxx, line 817
vtkMRMLVolumeGlyphSliceDisplayableManager (0x1548450): SetAndObserveMRMLDisplayableNode - MRMLScene does NOT contain any InteractionNode

Warning: In /path/to/Slicer/Libs/MRML/DisplayableManager/vtkMRMLAbstractDisplayableManager.cxx, line 583
vtkMRMLVolumeGlyphSliceDisplayableManager (0x1548450): CreateIfPossible - MRMLScene does NOT contain any InteractionNode

Warning: In /path/to/Slicer/Libs/MRML/DisplayableManager/vtkMRMLAbstractDisplayableManager.cxx, line 591
vtkMRMLVolumeGlyphSliceDisplayableManager (0x1548450): CreateIfPossible - MRMLScene does NOT contain any SelectionNode
//-----------

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22655 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/Testing/qMRMLSliceWidgetEventTranslatorPlayerTest1.cxx Diff File

2145-support-for-installing-extension-from-file b5392438

2013-10-30 11:17:14

jcfr

Details Diff
BUG: Fix "No LookupTable" error in qMRMLSliceWidget test

Full name of the test is: qMRMLSliceWidgetEventTranslatorPlayerTest1

The following error was reported:

//----------------------
ERROR: In /path/to/VTK/Imaging/vtkImageMapToColors.cxx, line 153
vtkImageMapToColors (0x268f190): RequestInformation: No LookupTable was set but number of components in input doesn't match OutputFormat, therefore input can't be passed through!

ERROR: In /path/to/VTK/Imaging/vtkImageExtractComponents.cxx, line 239
vtkImageExtractComponents (0x26947e0): Execute: Component 1 is not in input.

ERROR: In /path/to/VTK/Imaging/vtkImageExtractComponents.cxx, line 239
vtkImageExtractComponents (0x26947e0): Execute: Component 1 is not in input.
//----------------------

It is fixed by adding colorNodeRef attribute to VolumeDisplay element.

Also documented in the FAQ: http://wiki.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Developers/FAQ#Developer_FAQ:_MRML

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22654 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/Testing/vol_and_cube.mrml Diff File
mod - Libs/MRML/Widgets/Testing/qMRMLSliceWidgetEventTranslatorPlayerTest1.cxx Diff File

2145-support-for-installing-extension-from-file 32e2dd24

2013-10-28 17:50:24

jcfr

Details Diff
COMP: UpdateITKv4 - Fix unused typedefs warnings specific to gcc >= 4.8

$ git shortlog 4c1d191ceac136b920dbb13564c419fc821dd848..ee6472628dcbb12d2723f04dbf3b14764de2b4ff
Matthew McCormick (1):
COMP: Do not warn about unused typedefs

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22651 3bd1e089-480b-0410-8dfb-8563597acbee
mod - CMake/SlicerBlockCXXRequiredFlags.cmake Diff File
mod - SuperBuild/External_ITKv4.cmake Diff File

2145-support-for-installing-extension-from-file 361b9ab1

2013-10-26 23:08:50

jcfr

Details Diff
BUG: Ensure ROI worked as expected. Fixes 0003459

Fix bug introduced by r22539 when updating code to use vtkNew where
possible.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22642 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationROIDisplayableManager.cxx Diff File

2145-support-for-installing-extension-from-file b344932b

2013-10-25 17:52:07

jcfr

Details Diff
BUG: Attempt to fix font issue related to webkit performance on MacOSX 10.9

Associated message in the system log:
CoreText performance note: Client called CTFontCreateWithName() using name "Lucida Grande" and got font with PostScript name "LucidaGrande". For best performance, only use PostScript names when calling this API.

See https://bugreports.qt-project.org/browse/QTBUG-32789 and
http://successfulsoftware.net/2013/10/23/fixing-qt-4-for-mac-os-x-10-9-mavericks/

Fixes 0003460

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22641 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Main.cxx Diff File

2145-support-for-installing-extension-from-file e652462f

2013-10-25 17:52:05

jcfr

Details Diff
COMP: Tweak midas_api_upload_extension macro test case

Add link to existing screenshot and also add a svn example.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22640 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Extensions/CMake/MIDASAPIUploadExtension.cmake Diff File

2145-support-for-installing-extension-from-file 5d082aaa

2013-10-25 17:52:03

jcfr

Details Diff
COMP: Fix check in midas_api_upload_extension macro

Since the variable ${var} were defined in the parent scope, no warning
were displayed.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22639 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Extensions/CMake/MIDASAPIUploadExtension.cmake Diff File

2145-support-for-installing-extension-from-file 00b6d8fd

2013-10-25 15:04:27

mccormic

Details Diff
ENH: Update ITKv4.

Bump ITKv4 this fixes some MetaIO issues:

Stephen Aylward (3):
BUG: Fixed bugs in Form and hidden virtual funcs in Image
COMP: Fixed unused variable warnings in tests
COMP: Disable tests since paths are set wrong in VTK

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22638 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_ITKv4.cmake Diff File

2145-support-for-installing-extension-from-file d37e6712

2013-10-21 17:28:04

pieper

Details Diff
ENH: add node attributes describing the currently active manipulation

Tell which slice viewer is manipulating which fiducial in the
markup node.

Markups.MovingInSliceView holds the LayoutName of the sliceNode associated
with the viewer where the widget is being manipulated.

Markups.MovingSeedNumber holds the seed number being manipulated.

Both are cleared when the seed is not being manipulated by a widget.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22637 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Markups/MRMLDM/vtkMRMLMarkupsFiducialDisplayableManager2D.cxx Diff File

2145-support-for-installing-extension-from-file 384fadb2

2013-10-21 16:43:02

jcfr

Details Diff
COMP: Do not install teem development files.

Fixes 0002397

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22636 3bd1e089-480b-0410-8dfb-8563597acbee
mod - CMake/SlicerCPack.cmake Diff File

2145-support-for-installing-extension-from-file ccb8ab8e

2013-10-21 16:40:48

pieper

Details Diff
ENH: Contribution from Albert Montillo to paint in 3D

Adds a Sphere option to the PaintEffect to make it quicker to segment
large anatomical regions that are somewhat spherical.

Powerful when used with ThresholdPaint.

Cleanup code.

Remove debug comments.

Clean up variable names.

STYLE: fix small typo

From: Jim Miller <millerjv@ge.com>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22635 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/EditorLib/PaintEffect.py Diff File

2145-support-for-installing-extension-from-file 627a7107

2013-10-21 13:54:40

jcfr

Details Diff
COMP: Revert r22484 - Fix already integrated in ITK release branch.

Corresponding fixes in ITK release branch is InsightSoftwareConsortium/ITK@35000ead738c6

Fixes 0003421

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22633 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_ITKv4.cmake Diff File

2145-support-for-installing-extension-from-file 6d6618ca

2013-10-18 16:44:29

lassoan

Details Diff
ENH: Changed type of mrb file loading log messages from error to debug

The messages were logged as errors, while they are actually debug messages.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22618 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTCore/qSlicerSceneBundleIO.cxx Diff File

2145-support-for-installing-extension-from-file 661cc4eb

2013-10-18 12:35:49

alexy

Details Diff
BUG: 3447. Added .nrrd extension to grid transform IO

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22617 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Transforms/qSlicerTransformsIO.cxx Diff File

2145-support-for-installing-extension-from-file 84066907

2013-10-17 17:28:21

pohl

Details Diff
BUG: see comments of r17039 in Slicer 3 trunk

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22616 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_EMSegment.cmake Diff File

2145-support-for-installing-extension-from-file c0213e0c

2013-10-17 07:55:58

lassoan

Details Diff
BUG: Fixed crash in Transform widget

When hardened transform or untransformed multiple transformed items (with multi-select) then Slicer crashed.
Applied the same fix as in http://www.na-mic.org/Bug/view.php?id=2578.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22615 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Transforms/qSlicerTransformsModuleWidget.cxx Diff File

2145-support-for-installing-extension-from-file c34f79e2

2013-10-16 20:34:22

lassoan

Details Diff
BUG: Added string length check in vtkMRMLNode::GetReferenceRoleFromMRMLAttributeName to fix Slicer crash when loading a scene

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22614 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/vtkMRMLNode.cxx Diff File

2145-support-for-installing-extension-from-file cbc303d0

2013-10-15 16:10:36

finetjul

Details Diff
STYLE: Improve Data module documentation

Add "MRML Node Inspector" section documentation.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22613 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Data/Documentation/Data.xml Diff File

2145-support-for-installing-extension-from-file a8370d70

2013-10-14 16:56:00

naucoin

Details Diff
BUG: refactor code to remove unnecessary error message

There are two possible ways to obtain the results from PETStandardUptakeValueComputation,
having them written out to a .csv file or to a string parameter file that gets
parsed and loaded into the Slicer GUI. Only print out an error and fail if
neither parameter is specified.
Checks for empty strings and doesn't try to open the files, so the unable
to open error messages will only occur if a non empty file name fails
to open.

Issue 0003432


git-svn-id: http://svn.slicer.org/Slicer4/trunk@22612 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/PETStandardUptakeValueComputation/PETStandardUptakeValueComputation.cxx Diff File

2145-support-for-installing-extension-from-file d02e772f

2013-10-14 11:58:40

naucoin

Details Diff
BUG: fix typo in AdditionalInitializeStep method name

Fixing a mis spelling in the additional initialize step method name.
In vtkMRMLAbstractDisplayableManager it's defined as:
AdditionalInitializeStep
but vtkMRMLCameraDisplayableManager was using:
AdditionnalInitializeStep
with an extra n. Using that signature, it was never getting called
so when new layout windows were being created, the active camera
was not getting set on the renderer.

Issue 0001690



git-svn-id: http://svn.slicer.org/Slicer4/trunk@22611 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/DisplayableManager/vtkMRMLCameraDisplayableManager.cxx Diff File
mod - Libs/MRML/DisplayableManager/vtkMRMLCameraDisplayableManager.h Diff File
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