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master 134885d4

2014-02-07 12:07:59

jcfr

Details Diff 		COMP: Updating ITK to v4.5.0 + release branch patches

$ git shortlog b95e6a..754278cb --no-merges
Bill Lorensen (1):
ENH: Restore/convert/repair ImageRegistrationHistogramPlotter

Bradley Lowekamp (12):
DOC: Fixing BinShrink image caption
BUG: Fix up-casting causing inf loop
BUG: remove HDF5 configuration option propagated to the top
BUG: initialize member variables in LabelVoting filter
BUG: Add missing cmake file for MRCIO and wrapITK
BUG: Fix rounding issue with HistogramPlotter test
COMP: Remove unused method to manage warning
COMP: Prevent compile-time numeric warnings in Float Exception test
BUG: Add new baseline and relax tolerance for histogram plotter
BUG: Correctly re-throw exception to restore AbortEvent, ProcessAborted
BUG: Adding export specification to Exception objects
BUG: disable ipa-cp-clone in GDCM

Brian Helba (2):
BUG: Put ImageIOBase helper function in anonymous namespace
BUG: Remove an invalid test case that will always fail

Constantine Zakkaroff (1):
DOC: ITK Software Guide Reference Label Fix

Hans Johnson (1):
COMP: SimpleITK linkage failure

Kent Williams (1):
COMP: Remove outdated conditionals/pragmas

Matthew McCormick (12):
ENH: Wrap additional dimensions for TileImageFilter.
BUG: LeafTreeIterator does not produce correct output.
COMP: Fix BSplineDeformableTransformTest for GCC4.8.2.
COMP: Disable -Warray-bounds for GCC 4.7, 4.8.
COMP: Fix HDF5 add_custom_command TARGET does not exist warnings.
COMP: ImageRegistrationHistogramPlotter HistogramWriter visibility.
BUG: Do not clobber Git origin pushurl.
COMP: Fix signed/unsigned comparison in itkBinShrinkImageFilterTest1.
BUG: Fix BinShrinkImageFilter 32-bit failures with rounding.
BUG: Make RealTimeClock on Windows report consistent time.
ENH: Mark ImageRegistrationHistogramPlotterTest as RUNS_LONG.
COMP: Update libminc to latest version.

Paolo Zaffino (1):
ENH: wrap CenteredTransformInitializer 2D images

Xiaoxiao Liu (3):
BUG: Fix remote image IO module registration.
BUG: itkVTKTetrahedraMeshReader fails on a win64 build.
BUG: SCIFIO auto image factory registration.

From: Bradley Lowekamp <blowekamp@mail.nih.gov>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22867 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_ITKv4.cmake Diff File

master 04df9672

2014-02-06 23:55:52

jcfr

Details Diff 		ENH: Update CTK - Expose ctkPathLineEdit::nameFilters as property

$ git shortlog 15dc10d..7466ab0 --no-merges
Jean-Christophe Fillion-Robin (1):
Set ctkPathLineEdit::nameFilters as property for use in designer and python

Johan Andruejol (1):
Add location to ctkVTKDataSetModel

Nicole Aucoin (1):
BUG: listen for unique signals from the title text property

achronop (1):
Correct odd slider range when moves symmetrically. Fixes 0000432

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22866 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_CTK.cmake Diff File

master 898a900f

2014-02-06 17:12:42

jcfr

Details Diff 		BUG: Ensure label can be changed if it was been toggled.

Following commit r22862 fixing issue 0003576 to ensure label is restored
after switching effect, the label couldn't be changed after it being
toggled.

This commit now ensures that label is reset when eraseLabel has been
enabled and effect is switched.

See 0003576

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22865 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/EditorLib/EditBox.py Diff File
mod - Modules/Scripted/EditorLib/EditUtil.py Diff File

master c0915513

2014-02-06 08:44:34

jcfr

Details Diff 		ENH: Add convenience function 'slicer.util.getFirstNodeByClassAndName'

This is required because the function vtkMRMLScene::GetFirstNode
is not wrapped. Indeed, his third parameter is a pointer to
an integer.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22864 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Python/slicer/util.py Diff File

master 30133d5a

2014-02-06 08:44:29

jcfr

Details Diff 		COMP: Build 'DICOMDiffusionVolumePlugin' only if diffusion support is enabled

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22863 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/DICOMPlugins/CMakeLists.txt Diff File

master 7ea10346

2014-02-05 17:36:13

jcfr

Details Diff 		BUG: Restore stored label when selecting editor effect different from erase

Selecting the "EraseLabel" effect was storing the current label into
the 'storedLabel' parameter node attribute but this one was never restored
when selecting an other effect.

This commit fix the issue by ensuring the stored label is restored and also
introduce two new functions: 'backupLabel' and 'restoreLabel'

Fixes 0003576

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22862 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/EditorLib/EditBox.py Diff File
mod - Modules/Scripted/EditorLib/EditUtil.py Diff File

master e1bc774c

2014-02-05 16:00:31

jcfr

Details Diff 		ENH: Ensure qMRMLColorModel::ItemDataRole can be used from python

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22861 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/qMRMLColorModel.h Diff File

master d350e49b

2014-02-05 15:59:56

jcfr

Details Diff 		ENH: Set default value for slicer.util.loadLabelVolume 'properties' parameter

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22860 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Python/slicer/util.py Diff File

master 8118d56f

2014-02-04 15:17:03

pieper

Details Diff 		BUG: 0003568 Fix warning message about missing files

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22859 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/DICOM/DICOMLib/DICOMWidgets.py Diff File

master 9fe39a78

2014-02-04 10:17:20

pieper

Details Diff 		BUG: avoid a warning dialog in Editor when scene is closed

The warning message was triggered because the validity of the
volume state is checked when nodes are added or removed from the
scene, but it doesn't make sense to warn about the missing master
volume if there is also no merge volume.

Thanks to Alexandra Prior for pointing this out.

http://slicer-users.65878.n3.nabble.com/Editor-td4027182.html

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22858 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/EditorLib/HelperBox.py Diff File

master 005ee9cd

2014-02-04 10:17:14

pieper

Details Diff 		ENH: Updating SimpleFilter remote module

This updates adds a check box to set output as LabelMap, A Restore
defaults button, and print of filter to be run in python code to set
filter.

$ git log --oneline fc1f06..3bc2f
3bc2fdc Adding button "Restore" defaults
0d27412 ENH: improving responsiveness of main_queue_process
51d14b7 STYLE: move apply bottom to match CLI interface
49ec882 ENH: print object oriented python code to create filter before running
5d0a528 ENH: When a labelmap input is selected the output changes to labelmap
aa7ddc5 Update node selector and checkbox with LabelMap state
d4a5116 move output box and labelmap checkbox to self variables
648f736 Adding CheckBox to set output volume as label map

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22857 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild.cmake Diff File

master 8a826561

2014-02-03 13:40:23

jcfr

Details Diff 		ENH: Make layoutManager() method in qMRMLLayoutWidget Q_INVOKABLE

To make it accessible from python

From: Csaba Pinter <csaba.pinter@queensu.ca>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22856 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/qMRMLLayoutWidget.h Diff File

master 11b11932

2014-01-27 18:15:43

jcfr

Details Diff 		ENH: slicer.util - Add VTKObservationMixin python convenience class

This class provides a convenience interface to keep track of VTK
observations.

Assuming you have a class Foo already deriving from class Bar, you could
do:

class Foo(Bar, VTKObservationMixin):
def __init__(self):
super(Foo, self).__init__()

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22855 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Python/slicer/util.py Diff File

master 1e0faafb

2014-01-27 18:15:40

jcfr

Details Diff 		ENH: slicer.util - Add convenience methods resetThreeDViews/resetSliceViews

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22854 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Python/slicer/util.py Diff File

master db326eb9

2014-01-27 16:33:51

jcfr

Details Diff 		BUG: Fix convenience method slicer.util.modulePath introduced in r22851

Since "eval" is executed in the context where it is called, the 'slicer'
module should be imported.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22853 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Python/slicer/util.py Diff File

master a900dc38

2014-01-27 09:29:57

jcfr

Details Diff 		ENH: MRMLLayoutManager - Add methods to all slice or 3D views

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22852 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/qMRMLLayoutManager.cxx Diff File
mod - Libs/MRML/Widgets/qMRMLLayoutManager.h Diff File

master 9d9907cb

2014-01-27 09:29:54

jcfr

Details Diff 		ENH: slicer.util - Add convenience method "modulePath(moduleName)"

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22851 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Testing/Python/ScenePerformance.py Diff File
mod - Base/Python/slicer/util.py Diff File

master fc32e163

2014-01-24 04:03:31

jcfr

Details Diff 		BUG: Fix "Reload and Test" function

While commit r22839 re-factored the code associated with "Reload" function,
it also made the "Reload and Test" function fails.

This commit fixes the issue by setting the "<moduleName>" key into
the global dictionary of the reloaded module so that it can be
referenced in the "onReloadAndTest()" function.

Note that the overall approach to reload modules could be revisited to
leverage either the "rollback importer" method or a more sophisticated one
like the "python-reloader" [2][3]

Thanks to "Csaba Pinter <csaba.pinter@queensu.ca>" for reporting the issue.

[1] http://pyunit.sourceforge.net/notes/reloading.html
[2] http://www.indelible.org/ink/python-reloading/
[3] https://github.com/jparise/python-reloader

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22850 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Testing/Python/AtlasTests.py Diff File
mod - Applications/SlicerApp/Testing/Python/Charting.py Diff File
mod - Applications/SlicerApp/Testing/Python/FiducialLayoutSwitchBug1914.py Diff File
mod - Applications/SlicerApp/Testing/Python/JRC2013Vis.py Diff File
mod - Applications/SlicerApp/Testing/Python/RSNA2012ProstateDemo.py Diff File
mod - Applications/SlicerApp/Testing/Python/RSNAQuantTutorial.py Diff File
mod - Applications/SlicerApp/Testing/Python/RSNAVisTutorial.py Diff File
mod - Applications/SlicerApp/Testing/Python/ScenePerformance.py Diff File
mod - Applications/SlicerApp/Testing/Python/SliceLinkLogic.py Diff File
mod - Applications/SlicerApp/Testing/Python/Slicer4Minute.py Diff File
mod - Applications/SlicerApp/Testing/Python/ViewControllersSliceInterpolationBug1926.py Diff File
mod - Applications/SlicerApp/Testing/Python/fiber_visibility_crash2438.py Diff File
mod - Applications/SlicerApp/Testing/Python/labelToggleBug2049.py Diff File
mod - Applications/SlicerApp/Testing/Python/sceneImport2428.py Diff File
mod - Applications/SlicerApp/Testing/Python/slicerCloseCrashBug2590.py Diff File
mod - Applications/SlicerApp/Testing/Python/test_tractography_display.py Diff File
mod - Base/Python/slicer/util.py Diff File
mod - Extensions/Testing/ScriptedLoadableExtensionTemplate/ScriptedLoadableModuleTemplate/ScriptedLoadableModuleTemplate.py Diff File
mod - Modules/Loadable/CropVolume/Testing/Python/CropVolumeSelfTest.py Diff File
mod - Modules/Loadable/Markups/Testing/Python/AddManyMarkupsFiducialTest.py Diff File
mod - Modules/Loadable/Markups/Testing/Python/MarkupsInCompareViewersSelfTest.py Diff File
mod - Modules/Loadable/Markups/Testing/Python/NeurosurgicalPlanningTutorialMarkupsSelfTest.py Diff File
mod - Modules/Loadable/VolumeRendering/Testing/Python/VolumeRenderingSceneClose.py Diff File
mod - Modules/Scripted/DataProbe/DataProbe.py Diff File
mod - Modules/Scripted/SurfaceToolbox/SurfaceToolbox.py Diff File

master 0b1b8340

2014-01-24 04:03:06

jcfr

Details Diff 		BUG: slicer.util.reloadScriptedModule - Ensure cleanup function can be called

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22849 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Python/slicer/util.py Diff File

master f25b9a56

2014-01-24 04:03:01

jcfr

Details Diff 		STYLE: slicer.util.reloadScriptedModule - Reorganized code comments

Minimize confusion by associating a single comment with each section
of code.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22848 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Python/slicer/util.py Diff File

master c83c5417

2014-01-24 01:00:39

jcfr

Details Diff 		ENH: Update SlicerExecutionModel - Add ParameterSerializer support

$ git shortlog 9202673..6956eb2b
Jean-Christophe Fillion-Robin (3):
Merge pull request 0000020 from thewtex/parameter-serializer
Merge pull request 0000022 from thewtex/find-jsoncpp
Merge pull request 0000023 from thewtex/export-dep

Matt McCormick (5):
ENH: Add GENERATE_TCLAP_ASSIGNMENT_IFSET generation.
ENH: Add ParameterSerializer support.
ENH: Add FindJsonCpp.cmake.
BUG: Export the JsonCpp include directories in SlicerExecutionModelConfig.cmake.
BUG: include ParameterSerializerConfig.cmake in SlicerExecutionModelConfig.cmake.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22847 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_SlicerExecutionModel.cmake Diff File

master c8018699

2014-01-23 19:07:39

finetjul

Details Diff 		COMP: Fix compilation error with ITKv3

MakeOutput expects a DataObjectPointerArraySizeType and not an integer.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22846 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkImageToImageRegistrationMethod.txx Diff File

master b59c0387

2014-01-23 19:07:37

finetjul

Details Diff 		BUG: Fix crash in vtkMRMLAnnotationDisplayableManager

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22845 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationDisplayableManager.cxx Diff File

master 71edb98f

2014-01-23 13:58:54

fedorov

Details Diff 		ENH: set the multivolume loadable name as requested by the caller


git-svn-id: http://svn.slicer.org/Slicer4/trunk@22844 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild.cmake Diff File

master 5d561045

2014-01-23 12:14:31

fedorov

Details Diff 		BUG: fix incorrect function name in MultiVolumeImporter


git-svn-id: http://svn.slicer.org/Slicer4/trunk@22843 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild.cmake Diff File
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