Changesets: Slicer

2145-support-for-installing-extension-from-file ec70f69a

2013-02-15 21:38:03

jcfr

Details Diff
COMP: Remove extra include from SEMCommandLineLibraryWrapper

Since ITK_VERSION_MAJOR is already set while configuring the file, it is
not needed to include "itkConfigure.h".

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21717 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/CLI/SEMCommandLineLibraryWrapper.cxx.in Diff File

2145-support-for-installing-extension-from-file 9fda0e0e

2013-02-15 18:57:22

fedorov

Details Diff
ENH: Add ChangeTracker dependency

ChangeTracker is being mmigrated into extension


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21716 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Testing/Python/RSNA2012Quant.py Diff File

2145-support-for-installing-extension-from-file 91c6f7cd

2013-02-15 18:41:27

fedorov

Details Diff
ENH: Remove ChangeTracker module

ChangeTracker will be available as an extension from
https://github.com/fedorov/ChangeTrackerPy


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21715 3bd1e089-480b-0410-8dfb-8563597acbee
rm - SuperBuild/External_ChangeTrackerPy.cmake Diff File

2145-support-for-installing-extension-from-file d03cc8d5

2013-02-15 17:57:36

pieper

Details Diff
ENH: add a more realistic and usable scripted module template

Instead of 'dummy' parameters, make the template include node
combo boxes and an apply button. Also put the Reload and Test
functionality into a collapsible box.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21714 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Extensions/Testing/ScriptedLoadableExtensionTemplate/ScriptedLoadableExtensionTemplate.py Diff File

2145-support-for-installing-extension-from-file bad03261

2013-02-15 16:09:51

pieper

Details Diff
BUG: fix typo in scripted extension template

Use of the wrong module name prevented successful reload.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21713 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Extensions/Testing/ScriptedLoadableExtensionTemplate/ScriptedLoadableExtensionTemplate.py Diff File

2145-support-for-installing-extension-from-file 59c48e38

2013-02-15 15:28:28

naucoin

Details Diff
BUG: update tracts when scene views are restored.

Have the logic respond to scene view restored events and update
any tracts that are seeded from the first parameter node.

Issue 0002949


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21712 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/TractographyInteractiveSeeding/Logic/vtkSlicerTractographyInteractiveSeedingLogic.cxx Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/Logic/vtkSlicerTractographyInteractiveSeedingLogic.h Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/qSlicerTractographyInteractiveSeedingModuleWidget.cxx Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/qSlicerTractographyInteractiveSeedingModuleWidget.h Diff File

2145-support-for-installing-extension-from-file 13739cc2

2013-02-15 11:39:25

jcfr

Details Diff
ENH: Add display of direction vectors of image's IJK to Slicer's RAS coordinate.

Contributed by Kevin Wang

See 0002869 - http://na-mic.org/Mantis/view.php?id=2869

From: kevin Wang <kevin.wang@rmp.uhn.ca>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21711 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/Resources/UI/qMRMLVolumeInfoWidget.ui Diff File
mod - Libs/MRML/Widgets/qMRMLVolumeInfoWidget.cxx Diff File

2145-support-for-installing-extension-from-file a1a2ffd0

2013-02-15 11:35:35

finetjul

Details Diff
BUG: Fix default color on first color picker dialog opening

The problem was due to the color list view that was selecting the first
color in the list on focus.
(see QAbstractItemView::focusInEvent).
By setting the current index to invalid, it prevents focusInEvent to
select the first index.
Closes 0002956

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21710 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/qMRMLColorListView.cxx Diff File

2145-support-for-installing-extension-from-file bfae4f54

2013-02-15 11:23:06

jcfr

Details Diff
BUG: Ensure qMRMLVolumeInfoWidget state is cleared when widget is disabled.

See http://na-mic.org/Mantis/view.php?id=2881
Fixes 0002881

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21709 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/qMRMLVolumeInfoWidget.cxx Diff File

2145-support-for-installing-extension-from-file f39d80d3

2013-02-14 19:42:06

jcfr

Details Diff
BUG: Register ITKv4 IO factory in itkTestMainExtended

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21708 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ResampleDTIVolume/Testing/itkTestMainExtended.h Diff File

2145-support-for-installing-extension-from-file 6b2acb07

2013-02-14 19:42:04

jcfr

Details Diff
ENH: Enable floating point exceptions in itkTestMainExtended

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21707 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ResampleDTIVolume/Testing/itkTestMainExtended.h Diff File

2145-support-for-installing-extension-from-file b017cfb9

2013-02-14 19:42:02

jcfr

Details Diff
COMP: Update itkTestMainExtended to use GetImageType function from itkPluginUtilities.h

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21706 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ResampleDTIVolume/Testing/itkTestMainExtended.h Diff File

2145-support-for-installing-extension-from-file d309b001

2013-02-14 19:42:00

jcfr

Details Diff
STYLE: Consistent style between itkTestMainExtended and itkTestMain

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21705 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ResampleDTIVolume/Testing/itkTestMainExtended.h Diff File

2145-support-for-installing-extension-from-file 9932a42b

2013-02-14 17:05:23

jcfr

Details Diff
STYLE: For consistency, change CMake macro from "SIMPLE_TEST" to "simple_test"

Use of lower case CMake function/macro when including underscore has been
first introduced with r17191.

See http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=17191

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21704 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Testing/Cpp/CMakeLists.txt Diff File
mod - Base/Logic/Testing/CMakeLists.txt Diff File
mod - Base/QTCLI/Testing/CMakeLists.txt Diff File
mod - Base/QTCore/Testing/Cxx/CMakeLists.txt Diff File
mod - Base/QTGUI/Testing/Cxx/CMakeLists.txt Diff File
mod - CMake/SlicerMacroSimpleTest.cmake Diff File
mod - Extensions/Testing/LoadableExtensionTemplate/Testing/Cxx/CMakeLists.txt Diff File
mod - Extensions/Testing/SuperBuildLoadableExtensionTemplate/Testing/Cxx/CMakeLists.txt Diff File
mod - Libs/MRML/Core/Testing/CMakeLists.txt Diff File
mod - Libs/MRML/Logic/Testing/Cxx/CMakeLists.txt Diff File
mod - Libs/MRML/Widgets/Testing/CMakeLists.txt Diff File
mod - Libs/vtkTeem/Testing/CMakeLists.txt Diff File
mod - Modules/CLI/MultiResolutionAffineRegistration/Testing/CMakeLists.txt Diff File
mod - Modules/Core/Testing/CMakeLists.txt Diff File
mod - Modules/Loadable/Annotations/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Cameras/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Colors/Logic/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Colors/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/CropVolume/Testing/CMakeLists.txt Diff File
mod - Modules/Loadable/Data/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Data/Widgets/Testing/CMakeLists.txt Diff File
mod - Modules/Loadable/DoubleArrays/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Measurements/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Models/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Models/Widgets/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/MultiVolumeRendering/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Reformat/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/SceneViews/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/SlicerWelcome/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/TractographyDisplay/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/Testing/CMakeLists.txt Diff File
mod - Modules/Loadable/Transforms/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/ViewControllers/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/VolumeRendering/Logic/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/VolumeRendering/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Volumes/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Volumes/Widgets/Testing/Cxx/CMakeLists.txt Diff File

2145-support-for-installing-extension-from-file 7963eac6

2013-02-14 14:21:35

jcfr

Details Diff
COMP: Use VTK 5.10.1 to include latest bug fixes for 5.10.1

A new branch named "slicer-v5.10.1" has been created on the Slicer VTK fork.
It is based of VTK v5.10.1 and includes Slicer specific patches.

List of commit specific to v5.10.1 is listed here:
https://github.com/Kitware/VTK/compare/v5.10.0...v5.10.1

List of commit specific to Slicer is listed here:
https://github.com/Slicer/VTK/compare/Kitware:v5.10.1...Slicer:slicer-v5.10.1

Thanks to David Gobbi and Csaba Pinter for suggesting the update.

Fixes 0002950

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21703 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_VTK.cmake Diff File

2145-support-for-installing-extension-from-file 69129273

2013-02-14 13:11:14

fedorov

Details Diff
STYLE: remove unused variable


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21702 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Logic/vtkPichonFastMarching.cxx Diff File

2145-support-for-installing-extension-from-file 882c0313

2013-02-14 12:53:33

fedorov

Details Diff
ENH: added utility function for seed initialization

See issue 2454. This utility function is for optimized seed initialization, as
compared to traversing the image from the python Editor effect code.


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21701 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/Logic/vtkPichonFastMarching.cxx Diff File
mod - Base/Logic/vtkPichonFastMarching.h Diff File

2145-support-for-installing-extension-from-file 7bf6df21

2013-02-14 11:31:17

mccormic

Details Diff
COMP: Fix ExpertAutomatedRegistration TEMP directory.

Make it also work if built outside the Slicer source tree.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21700 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ExpertAutomatedRegistration/Testing/CMakeLists.txt Diff File

2145-support-for-installing-extension-from-file 5396bf72

2013-02-13 19:42:23

jcfr

Details Diff
COMP: Unknown keyword passed to build macro now trigger an error.

This will allow to catch typo early one by preventing developer from
adding unknown/unused arguments.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21699 3bd1e089-480b-0410-8dfb-8563597acbee
mod - CMake/SlicerMacroBuildBaseQtLibrary.cmake Diff File
mod - CMake/SlicerMacroBuildModuleLogic.cmake Diff File
mod - CMake/SlicerMacroBuildModuleMRML.cmake Diff File
mod - CMake/SlicerMacroBuildModuleQtLibrary.cmake Diff File
mod - CMake/SlicerMacroBuildModuleVTKLibrary.cmake Diff File
mod - CMake/SlicerMacroBuildModuleWidgets.cmake Diff File
mod - CMake/SlicerMacroBuildQtModule.cmake Diff File
mod - CMake/SlicerMacroBuildScriptedModule.cmake Diff File

2145-support-for-installing-extension-from-file 39b6a720

2013-02-13 18:20:11

mccormic

Details Diff
ENH: Generate ExpertAutomatedRegistration test data.

The code to generate test data was already. It was fixed
up and re-enabled.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21698 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ExpertAutomatedRegistration/Testing/CMakeLists.txt Diff File
mod - Modules/CLI/ExpertAutomatedRegistration/Testing/GenerateExpertAutomatedRegistrationTestData.cxx Diff File

2145-support-for-installing-extension-from-file 45f4ff12

2013-02-13 18:20:10

mccormic

Details Diff
STYLE: Remove extra ITK_LIBRARIES in GaussianBlurImageFilter CMake config.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21697 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/GaussianBlurImageFilter/CMakeLists.txt Diff File

2145-support-for-installing-extension-from-file 13e018e3

2013-02-12 23:34:15

mccormic

Details Diff
COMP: itkImageToImageRegistrationMethod: shadowed method.

Warning occurs with switch to ITKv4.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21696 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkImageToImageRegistrationMethod.h Diff File
mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkImageToImageRegistrationMethod.txx Diff File

2145-support-for-installing-extension-from-file 75c182ac

2013-02-12 23:34:13

mccormic

Details Diff
COMP: itkBSplineImageToImageRegistrationMethod unused variable.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21695 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkBSplineImageToImageRegistrationMethod.txx Diff File

2145-support-for-installing-extension-from-file 441b0724

2013-02-12 23:34:11

mccormic

Details Diff
STYLE: Improvements to ExpertAutomatedRegistration.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21694 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/CLI/ExpertAutomatedRegistration/ExpertAutomatedRegistration.cxx Diff File

2145-support-for-installing-extension-from-file 4a476f26

2013-02-12 18:47:16

naucoin

Details Diff
ENH: add tool tips to give users hints on where to find the snapshot.

Issue 0002944


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21693 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/Resources/UI/qMRMLScreenShotDialog.ui Diff File
mod - Libs/MRML/Widgets/qMRMLCaptureToolBar.cxx Diff File
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