Changesets: Import 2017-06-07 23:51:09
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master 8dac11d7 2016-11-23 14:00:58 Details Diff |
BUG: Revert "BUG: ExtensionBuildSystem: Fix ExperimentalUpload on VS2013" This reverts commit 4f45e6c05f14335a0d4c19f64b6f172bb43cb387. It caused build errors in extensions, such as SlicerRT: CMake Error at C:/D/N/Slicer-0-build/Slicer-build/SlicerConfig.cmake:96 (message): To be effective, 'find_package(Slicer COMPONENTS ConfigurePrerequisites)' should be placed before any calls to 'project()' or 'enable_language()'.Before re-configuring, make sure to clean the build directory: C:/D/N/E-0/SlicerRT-build Call Stack (most recent call first): CMakeLists.txt:24 (find_package) git-svn-id: http://svn.slicer.org/Slicer4/trunk@25572 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Extensions/CMake/SlicerBlockBuildPackageAndUploadExtension.cmake | Diff File | ||
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master 3d1618b2 2016-11-22 17:51:33 Details Diff |
ENH: Add python cli automating versioning of Slicer wiki documentation See https://www.slicer.org/wiki/Documentation/Nightly/Developers/ReleaseProcess#Update_Slicer_wiki ``` $ python wiki.py --help usage: wiki.py [-h] [--log-level LOG_LEVEL] [--password PASSWORD] {query,copy,update} ... This command-line tool allows to `version` Slicer mediawiki documentation. It has three main modes of operation: ``query``, `copy` and ``update``. positional arguments: {query,copy,update} available sub-commands query obtain version information copy copy Nightly pages into RELEASE_VERSION namespace update create and/or update wiki pages with RELEASE_VERSION optional arguments: -h, --help show this help message and exit --log-level LOG_LEVEL Level of debug verbosity. DEBUG, INFO, WARNING, ERROR, CRITICAL. --password PASSWORD password for 'UpdateBot' user. By default, try to get password from 'SLICER_WIKI_UPDATEBOT_PWD' environment variable. ``` git-svn-id: http://svn.slicer.org/Slicer4/trunk@25571 3bd1e089-480b-0410-8dfb-8563597acbee |
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| add - Base/Python/slicer/release/wiki.py | Diff File | ||
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master 7e555562 2016-11-22 13:42:14 Details Diff |
ENH: Making qSlicerTerminologyNavigatorWidget::deserializeTerminologyEntry accessible from python git-svn-id: http://svn.slicer.org/Slicer4/trunk@25570 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyNavigatorWidget.h | Diff File | ||
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master b6549477 2016-11-22 12:10:13 Details Diff |
ENH: Added read-only option to segments table view and segment editor widget If read-only is enabled in segments table view, then double-click and edit key press now do not trigger editing (selection and show/hide are still possible). Segment editor widget disables the Add and Remove segment buttons, as well as Create surface, and sets read-only flag to the table if read-only is set to true Re https://github.com/QIICR/Reporting/issues/90 git-svn-id: http://svn.slicer.org/Slicer4/trunk@25569 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Segmentations/Widgets/qMRMLSegmentEditorWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Segmentations/Widgets/qMRMLSegmentEditorWidget.h | Diff File | ||
| mod - Modules/Loadable/Segmentations/Widgets/qMRMLSegmentsTableView.cxx | Diff File | ||
| mod - Modules/Loadable/Segmentations/Widgets/qMRMLSegmentsTableView.h | Diff File | ||
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master e4efafa3 2016-11-22 12:06:29 Details Diff |
BUG: Fixed category-only selection issue in Terminologies Crash occurred if only category was selected without a type, then clicked again on the selector button. Crash is now fixed, and also the Select button is only active if the selection is invalid (it doesn't make sense to allow the user to select only a category without a type) Fixes https://github.com/QIICR/Reporting/issues/98 git-svn-id: http://svn.slicer.org/Slicer4/trunk@25568 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyNavigatorWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyNavigatorWidget.h | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologySelectorDialog.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologySelectorDialog.h | Diff File | ||
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master 51220abe 2016-11-22 09:55:31 Details Diff |
ENH: 0004146 add advisor for dicom extensions After an import to the dicom database the contents are checked against a pre-configured file that suggests possible extensions. See: http://www.na-mic.org/Bug/view.php?id=4146 https://github.com/QIICR/Reporting/pull/71# ENH: improve message about dicom extensions Now the datatype is described in a human readable form. From: Steve Pieper <pieper@isomics.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@25567 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DICOM/CMakeLists.txt | Diff File | ||
| add - Modules/Scripted/DICOM/DICOMExtensions.json | Diff File | ||
| mod - Modules/Scripted/DICOMLib/DICOMPlugin.py | Diff File | ||
| mod - Modules/Scripted/DICOMLib/DICOMWidgets.py | Diff File | ||
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master aaa8aa5b 2016-11-22 01:03:37 Details Diff |
BUG: Segment editor create default segmentation fixed After scene close new default segmentation node or existing segmentation node is correctly created/selected. git-svn-id: http://svn.slicer.org/Slicer4/trunk@25566 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/SegmentEditor/SegmentEditor.py | Diff File | ||
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master 5b3834ec 2016-11-22 01:03:30 Details Diff |
BUG: Fixed segmentation controller slice view widget Segmentation state is correctly updated on scene close or when segmentation is deleted. Visible segments list state is correctly displayed when adding/removing segments. git-svn-id: http://svn.slicer.org/Slicer4/trunk@25565 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/Resources/UI/qMRMLSegmentSelectorWidget.ui | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLSegmentSelectorWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLSliceControllerWidget.cxx | Diff File | ||
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master ffd102a4 2016-11-21 21:22:18 Details Diff |
BUG: remove deprecated DICOM SEG export from Editor This functionality depended on now deprecated and non-existing functionality in the Reporting module. The updated version of the Reporting module uses dcmqi, https://github.com/QIICR/dcmqi, for DICOM SEG conversion, which in turn has an interface different from what is used in this implementation. DICOM SEG export will be provided in the updated Reporting extension, which is reusing Segment Editor components for editing. It is possible that this export functionality will be available in the main application in the future. git-svn-id: http://svn.slicer.org/Slicer4/trunk@25564 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/EditorLib/EditUtil.py | Diff File | ||
| mod - Modules/Scripted/EditorLib/LabelStructureListWidget.py | Diff File | ||
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master 9c318571 2016-11-21 16:58:04 Details Diff |
ENH: Added capability to load terminology from DICOM SEG descriptor Needed for adding terminology information from DICOM SEG loading. The DICOM plugin that employs this feature is currently located at https://github.com/QIICR/Reporting/blob/master/Py/DICOMSegmentationPlugin.py git-svn-id: http://svn.slicer.org/Slicer4/trunk@25563 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Terminologies/Logic/vtkSlicerTerminologiesModuleLogic.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Logic/vtkSlicerTerminologiesModuleLogic.h | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyNavigatorWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyNavigatorWidget.h | Diff File | ||
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master 2ad07586 2016-11-21 14:16:47 Details Diff |
ENH: Add mirror and normals auto-orient to Surface Toolbox Author: Beatriz Paniagua <beatriz.paniagua@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@25562 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Models/Logic/vtkSlicerModelsLogic.h | Diff File | ||
| mod - Modules/Scripted/SurfaceToolbox/SurfaceToolbox.py | Diff File | ||
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master 82cacf74 2016-11-20 20:20:57 Details Diff |
COMP: Fixed build error CMake Error at Modules/Loadable/CMakeLists.txt:37 (add_subdirectory): The binary directory C:/D/E/Slicer-0-build/Slicer-build/Modules/Loadable/SubjectHierarchy is already used to build a source directory. It cannot be used to build source directory C:/D/E/Slicer-0/Modules/Loadable/SubjectHierarchy git-svn-id: http://svn.slicer.org/Slicer4/trunk@25561 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/CMakeLists.txt | Diff File | ||
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master 634e6ac1 2016-11-20 06:49:59 Details Diff |
COMP: Fixed build error 34>c:\d\n\slicer-1-build\slicer-build\modules\loadable\markups\subjecthierarchyplugins\../../../../../../Slicer-1/Modules/Loadable/Markups/SubjectHierarchyPlugins/qSlicerSubjectHierarchyMarkupsPlugin.h(27): fatal error C1083: Cannot open include file: 'qSlicerSubjectHierarchyAbstractPlugin.h': No such file or directory (C:\D\N\Slicer-1-build\Slicer-build\Modules\Loadable\Markups\SubjectHierarchyPlugins\moc_qSlicerSubjectHierarchyMarkupsPlugin.cxx) [C:\D\N\Slicer-1-build\Slicer-build\Modules\Loadable\Markups\SubjectHierarchyPlugins\qSlicerMarkupsSubjectHierarchyPlugins.vcxproj] [C:\D\N\Slicer-1-build\Slicer.vcxproj] git-svn-id: http://svn.slicer.org/Slicer4/trunk@25560 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/CMakeLists.txt | Diff File | ||
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master 880cce00 2016-11-20 03:00:28 Details Diff |
COMP: Fix Markups build error ensuring SH headers are available This commit fixes a build error caused by a change in the build order of the loadable module and introduced by r25551 (ENH: Allow display transform glyphs at markup positions). Before r25551: [...] Colors SubjectHierarchy Transforms Annotations Data DoubleArrays Markups [...] After r25551: [...] Colors Annotations Markups Transforms SubjectHierarchy Data DoubleArrays [...] Build error fixed by this commit: /path/to/Slicer/Modules/Loadable/Markups/SubjectHierarchyPlugins/qSlicerSubjectHierarchyMarkupsPlugin.cxx:28:50: fatal error: qSlicerSubjectHierarchyPluginHandler.h: No such file or directory compilation terminated. git-svn-id: http://svn.slicer.org/Slicer4/trunk@25559 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/CMakeLists.txt | Diff File | ||
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master 3348b0bd 2016-11-20 03:00:26 Details Diff |
STYLE: vtkSlicerTransformLogic: Fix unused variable warning git-svn-id: http://svn.slicer.org/Slicer4/trunk@25558 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Transforms/Logic/vtkSlicerTransformLogic.cxx | Diff File | ||
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master 62431b3d 2016-11-19 15:11:54 Details Diff |
ENH: Terminology now uses code to identify entry Instead of only using CodeMeaning, terminology logic now uses CodingSchemeDesignator and CodeValue to identify an entry. As a side effect, redundant members were removed and lookup became faster. Segments only contain one tag with the whole serialized terminology entry instead of 8 tags, and it does not contain recommended color any more. Terminology JSON files were changed so that capitalization is consistent across terminology dictionary files git-svn-id: http://svn.slicer.org/Slicer4/trunk@25557 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/vtkSegmentationCore/vtkSegment.cxx | Diff File | ||
| mod - Libs/vtkSegmentationCore/vtkSegment.h | Diff File | ||
| mod - Modules/Loadable/Segmentations/Widgets/qMRMLSegmentsTableView.cxx | Diff File | ||
| mod - Modules/Loadable/Segmentations/Widgets/qMRMLSegmentsTableView.h | Diff File | ||
| mod - Modules/Loadable/Terminologies/Logic/vtkSlicerTerminologiesModuleLogic.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Logic/vtkSlicerTerminologiesModuleLogic.h | Diff File | ||
| mod - Modules/Loadable/Terminologies/Resources/AnatomicRegionModifier-Master.json | Diff File | ||
| mod - Modules/Loadable/Terminologies/Resources/SegmentationCategoryTypeModifier-DICOM-Master.json | Diff File | ||
| mod - Modules/Loadable/Terminologies/Resources/SegmentationCategoryTypeModifier-SlicerGeneralAnatomy.json | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyItemDelegate.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyNavigatorWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologyNavigatorWidget.h | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologySelectorButton.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologySelectorButton.h | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologySelectorDialog.cxx | Diff File | ||
| mod - Modules/Loadable/Terminologies/Widgets/qSlicerTerminologySelectorDialog.h | Diff File | ||
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master a3c8f8bd 2016-11-19 08:16:52 Details Diff |
COMP: Fixed build error git-svn-id: http://svn.slicer.org/Slicer4/trunk@25556 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLTransformableNode.cxx | Diff File | ||
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master a214874e 2016-11-19 07:55:40 Details Diff |
COMP: Fixed build error caused by transform logic relocation git-svn-id: http://svn.slicer.org/Slicer4/trunk@25555 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLTransformableNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformableNode.h | Diff File | ||
| mod - Modules/CLI/ProbeVolumeWithModel/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Data/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Data/qSlicerDataModuleWidget.cxx | Diff File | ||
| mod - Modules/Loadable/SubjectHierarchy/Logic/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/SubjectHierarchy/Logic/vtkSlicerSubjectHierarchyModuleLogic.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/Logic/vtkSlicerTransformLogic.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/Logic/vtkSlicerTransformLogic.h | Diff File | ||
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master 4f45e6c0 2016-11-18 16:06:54 Details Diff |
BUG: ExtensionBuildSystem: Fix ExperimentalUpload on VS2013 This commit fixes the following error: CUSTOMBUILD : error : could not find CMAKE_PROJECT_NAME in Cache [C:\D\N\exStone-build\ExperimentalUpload.vcxproj] More details: http://slicer-devel.65872.n3.nabble.com/error-during-ExperimentalUpload-build-could-not-find-CMAKE-PROJECT-NAME-in-Cache-tt4037574.html Reported-by: Hammond, Emily M <emily-hammond@uiowa.edu> Reported-by: qimo601 <qimo601@126.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@25554 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Extensions/CMake/SlicerBlockBuildPackageAndUploadExtension.cmake | Diff File | ||
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master 4e6b9d2d 2016-11-18 14:49:39 Details Diff |
STYLE: CMake: Remove unused and unmaintained custom FindCuda module Originally introduced in 2008 by r7552 (ENH:added cuda CMake scripts) and last updated in 2009 by r9363 (COMP: fix cmake file for machines that don't have cuda sdk installed ), this module and associated file are removed. Up-to-date and maintained version is available in CMake: https://cmake.org/cmake/help/v3.7/module/FindCUDA.html git-svn-id: http://svn.slicer.org/Slicer4/trunk@25553 3bd1e089-480b-0410-8dfb-8563597acbee |
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| rm - CMake/cuda/CudaDependency.cmake | Diff File | ||
| rm - CMake/cuda/FindCuda.cmake | Diff File | ||
| rm - CMake/cuda/empty.depend.in | Diff File | ||
| rm - CMake/cuda/make2cmake.cmake | Diff File | ||
| rm - CMake/cuda/parse_cubin.cmake | Diff File | ||
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master b25d2f40 2016-11-18 14:41:07 Details Diff |
BUG: ExtensionBuildSystem: Ensure GIT_EXECUTABLE set in SliceConfig is used This problem is not revealed when Slicer extensions are configured and built automatically by the Extensions build system setup on the factory machines. In that case, variables like git and svn paths are explicitly passed to the extension and added to the cache using the "-D" cmake arguments. Instead, this commit fixes a problem occurring when an extension is configured manually by only passing "-DSlicer_DIR:PATH=/path/to/Slicer-SuperBuild-Release/Slicer-build/" In that case, because the value of GIT_EXECUTABLE is set in SlicerConfig (see r25523) and then mark_as_advanced is used in FindGit module, it triggered https://gitlab.kitware.com/cmake/cmake/issues/15448 This commit workaround the problem commenting "mark_as_advanced" git-svn-id: http://svn.slicer.org/Slicer4/trunk@25552 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/FindGit.cmake | Diff File | ||
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master 215aecd9 2016-11-18 13:44:48 Details Diff |
ENH: Allow display transform glyphs at markup positions It is now possible to show where a markup point is transformed to using transform visualization. Select "Glyph" visualization mode, open "Advanced" section and set "Source points". Glyphs are updated in real-time as markups are moved, so this can be also used for probing the transformation by drag-and-dropping markups in 2D and 3D views. Transform logic needed access to Markups node, therefore module logic was moved to Modules/Loadable/Transforms/Logic. git-svn-id: http://svn.slicer.org/Slicer4/trunk@25551 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Logic/CMakeLists.txt | Diff File | ||
| mod - Base/Logic/Testing/CMakeLists.txt | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformDisplayNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformDisplayNode.h | Diff File | ||
| mod - Modules/Loadable/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Data/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Markups/MRML/vtkMRMLMarkupsNode.cxx | Diff File | ||
| mod - Modules/Loadable/Markups/MRML/vtkMRMLMarkupsNode.h | Diff File | ||
| mod - Modules/Loadable/SubjectHierarchy/Logic/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Transforms/CMakeLists.txt | Diff File | ||
| add - Modules/Loadable/Transforms/Logic/CMakeLists.txt | Diff File | ||
| add - Modules/Loadable/Transforms/Logic/Testing/CMakeLists.txt | Diff File | ||
| add - Modules/Loadable/Transforms/Logic/Testing/Cxx/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Transforms/MRMLDM/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Transforms/MRMLDM/vtkMRMLTransformsDisplayableManager2D.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/MRMLDM/vtkMRMLTransformsDisplayableManager3D.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/Widgets/Resources/UI/qMRMLTransformDisplayNodeWidget.ui | Diff File | ||
| mod - Modules/Loadable/Transforms/Widgets/qMRMLTransformDisplayNodeWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/Widgets/qMRMLTransformDisplayNodeWidget.h | Diff File | ||
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master ac503f49 2016-11-18 02:56:26 Details Diff |
STYLE: Fix spelling 'additonal' -> 'additional' From: Isaiah Norton <inorton@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@25550 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/Main.cxx | Diff File | ||
| mod - Base/QTCore/Testing/Cxx/qSlicerExtensionsManagerModelTest.cxx | Diff File | ||
| mod - Base/QTCore/qSlicerCoreCommandOptions.cxx | Diff File | ||
| mod - Base/QTCore/qSlicerCoreCommandOptions.h | Diff File | ||
| mod - Base/QTGUI/qSlicerApplication.cxx | Diff File | ||
| mod - Extensions/CMake/SlicerBlockAdditionalLauncherSettings.cmake | Diff File | ||
| mod - Libs/MRML/DisplayableManager/vtkMRMLAbstractDisplayableManager.h | Diff File | ||
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master a9518b13 2016-11-18 02:14:53 Details Diff |
STYLE: vtkSegmentationHistory: Fix typo in doxygen git-svn-id: http://svn.slicer.org/Slicer4/trunk@25549 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/vtkSegmentationCore/vtkSegmentationHistory.h | Diff File | ||
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master 1e9db297 2016-11-18 01:34:04 Details Diff |
STYLE: External_SlicerExecutionModel: Simplify enabling of Param Serializer git-svn-id: http://svn.slicer.org/Slicer4/trunk@25548 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_SlicerExecutionModel.cmake | Diff File | ||
