Changesets: Slicer
|
2145-support-for-installing-extension-from-file a6934aae 2014-01-07 13:13:10 Details Diff |
STYLE: Add X,O,M and S documentation for VolumeRendering module git-svn-id: http://svn.slicer.org/Slicer4/trunk@22805 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/Loadable/VolumeRendering/Documentation/VolumeRendering.xml | Diff File | ||
|
2145-support-for-installing-extension-from-file 7d1c27fa 2014-01-07 13:12:49 Details Diff |
BUG: Cleanup ROI widget and representation This reverts commit r22803 inadvertently pushed. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22804 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLDisplayNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLDisplayNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLModelDisplayNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLModelDisplayNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLVolumeDisplayNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLVolumeDisplayNode.h | Diff File | ||
| mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationROIDisplayableManager.cxx | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation.cxx | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation.h | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation2D.cxx | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation2D.h | Diff File | ||
|
2145-support-for-installing-extension-from-file ba09f5dc 2014-01-07 13:09:37 Details Diff |
STYLE: Cleanup ROI widget and representation Add vtkMRMLDisplayNode::GetBounds() utility method. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22803 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLDisplayNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLDisplayNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLModelDisplayNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLModelDisplayNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLVolumeDisplayNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLVolumeDisplayNode.h | Diff File | ||
| mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationROIDisplayableManager.cxx | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation.cxx | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation.h | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation2D.cxx | Diff File | ||
| mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationROIRepresentation2D.h | Diff File | ||
|
2145-support-for-installing-extension-from-file 95ac0418 2014-01-07 00:44:32 Details Diff |
STYLE: Consistently report error in vtkMRMLNRRDStorageNode read/write method git-svn-id: http://svn.slicer.org/Slicer4/trunk@22802 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file 2a1f15b2 2014-01-07 00:44:27 Details Diff |
BUG: Fix reading of DWI files. Fixes 0003545 This commit fixes regression introduced by commit r22753 fixing issue 0003511 that was preventing "vtkNRRDReader::CanReadFile" from returning the correct value. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22801 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/vtkTeem/vtkNRRDReader.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file 894bbb07 2014-01-06 13:16:30 naucoin Details Diff |
BUG: fix updating fiducials after scene load After loading a scene, changing the display properties of a fiducial list was not being reflected in the 2d and 3d views. There was a missing event observation in the Markups displayable managers, adding in vtkMRMLDisplayableNode::DisplayModifiedEvent to the list of events observed on a markups node fixed the problem. Issue 0003480 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22800 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Modules/Loadable/Markups/MRMLDM/vtkMRMLMarkupsDisplayableManager2D.cxx | Diff File | ||
| mod - Modules/Loadable/Markups/MRMLDM/vtkMRMLMarkupsDisplayableManager3D.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file 16c7b04d 2014-01-06 12:50:04 Details Diff |
COMP: Fix error when building against Qt not having SSL support. Commit r22782 was done under the assumption that Qt would be built with SSL support. This commit ensures Qt with/without SSL support is supported. Note that the build system could be improved to detect with Qt has OpenSSL support, if this is the case, the OpenSSL project could be automatically enabled unless explicitly disabled. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22799 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTGUI/qSlicerWebWidget.cxx | Diff File | ||
| mod - Base/QTGUI/qSlicerWebWidget.h | Diff File | ||
|
2145-support-for-installing-extension-from-file 355c8e06 2014-01-06 10:05:26 Details Diff |
COMP: Ensure python is forced to Release when built on single config system Following previous commit (r22797), since CMAKE_BUILD_TYPE is now properly passed to all projects, it is important to force the value associated to python to Release. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22798 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild/External_python.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file a04374a2 2014-01-06 09:54:35 Details Diff |
COMP: Pass CMAKE_BUILD_TYPE to external project for all configurations Thanks to Hans Johnson <hans-johnson@uiowa.edu> for reporting the problem. Before this commit, CMAKE_BUILD_TYPE was passed to external project only the first configuration if it wasn't already defined (by passing -D option). Co-authored-by: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22797 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - CMakeLists.txt | Diff File | ||
| mod - SuperBuild/External_CTK.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file 9f0833be 2014-01-05 21:16:04 Details Diff |
ENH: Kill CLI executable process on Slicer exit. The use of a MutexLock is required because the process have been initiated from a thread and they are killed by calling "itksysProcess_Kill()" from the main thread. In "ApplyTask()", the MutexLock is Locked/Unlocked at the position: 1) After calling "itksysProcess_Kill()" in "KillProcesses()", the call to "itksysProcess_WaitForExit()" in "ApplyTask()" leads to a call "kwsysProcessCleanup". Since calling "kwsysProcessCleanup" frees the memory (i.e free ForkPIDs, RealWorkingDirectory and also cleanup descriptor) and that "kwsysProcess_Kill" expects the ForkPIDs array to be available, it is required to use a mutex to make sure the call to "kwsysProcess_Kill" completes before "itksysProcess_WaitForExit" is executed. 2) When calling "itksysProcess_Delete()" and updating the vector of "Processes" that is accessed from both the main thread and the ApplyTask thread. Fixes 0003395 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22796 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTCLI/qSlicerCLIExecutableModuleFactory.cxx | Diff File | ||
| mod - Base/QTCLI/qSlicerCLIExecutableModuleFactory.h | Diff File | ||
| mod - Base/QTCLI/vtkSlicerCLIModuleLogic.cxx | Diff File | ||
| mod - Base/QTCLI/vtkSlicerCLIModuleLogic.h | Diff File | ||
|
2145-support-for-installing-extension-from-file 3200d4f2 2014-01-05 21:15:58 Details Diff |
STYLE: Simplify code using "vtkNew" to create "vtkSlicerTask" in CLI logic git-svn-id: http://svn.slicer.org/Slicer4/trunk@22795 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTCLI/vtkSlicerCLIModuleLogic.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file ce2f6c1e 2014-01-03 16:02:29 Details Diff |
COMP: fix warnings in cmake/ctk/python See: https://github.com/commontk/CTK/pull/430 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22794 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild/External_CTK.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file b7c81385 2014-01-03 14:05:19 Details Diff |
COMP: handle case where TCL is disabled but EM is set to ON. If you have first configured with TCL on, then EMSegment is on by default too. But turning off TCL does not turn off EMSegment, so the linker was failing to find the EMSegment logic library. This patch is consistent with the rest of the logic in the CMakeLists, but longer term EMSegment should be explicitly disabled if it doesn't have the right prerequisites. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22793 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Applications/SlicerApp/Testing/Cpp/CMakeLists.txt | Diff File | ||
|
2145-support-for-installing-extension-from-file 9e230ada 2013-12-31 17:21:06 Details Diff |
ENH: update LandmarkRegistration to support RegistrationPlugins Still some work to do on the built-in plugins, but the framework is now in place for extensions (like SlicerRT/Plastimatch) to provide registration plugins. Affine registration is now a plugin and it works like the previous version of LandmarkRegistration which supported only Affine. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22792 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file 95fd51ff 2013-12-19 22:21:24 Details Diff |
ENH: Fix module history to keep most recent selected module last The current implementation is a dysfunctional mix between a "module history navigator" and "fixed workflow navigator". This commit implements "module history navigator" behavior, which is useful for generic Slicer use. A "fixed workflow navigator" is a very special case, it is only applicable when all the modules are part of the workflow, there are no loops, skipping of steps, auxiliary modules, etc. Considering the following convention, the update is illustrated below. Legend: -> X : Go to module X P : List of module in the "previous stack" N : List of module in the "next stack" Current behaviour: A P: - | N: - -> B P: A | N: - -> C P: BA | N: - -> D P: CBA | N: - -> A P: - | N: BCD -> E P: A | N: - After integrating this commit, the behaviour is then: A P: - | N: - -> B P: A | N: - -> C P: BA | N: - -> D P: CBA | N: - -> A P: DCB | N: - -> E P: ADCB | N: - where A: Welcome module B: Annotations C: Data D: DataStore E: SampleData Fixes 0003533 From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22791 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTGUI/qSlicerModuleSelectorToolBar.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file b2a88002 2013-12-19 21:47:04 Details Diff |
STYLE: Update doxygen comment of vtkMRMLScene::AddReferencedNodeID The comment document the changes introduced by commit r22669 From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22790 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLScene.h | Diff File | ||
|
2145-support-for-installing-extension-from-file e70b1b07 2013-12-19 21:46:54 Details Diff |
STYLE: Improve readability of vtkMRMLScene::AddReferencedNodeID method This commit does not introduced any functional change, it just makes the code cleaner. From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22789 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLModelNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLScene.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file 19bc562f 2013-12-19 21:46:42 Details Diff |
BUG: Added missing node references update to scene->AddNode methods Fixes http://na-mic.org/Mantis/view.php?id=3539. Problem was that node references were not updated in the scene when node->SetScene(scene) was called for the node before scene->AddNode(node). From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22788 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Libs/MRML/Core/vtkMRMLScene.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file af65ff60 2013-12-18 16:40:09 Details Diff |
ENH: Add 'DataStore' to top-level module category. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22787 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file 63fef02a 2013-12-18 10:30:42 Details Diff |
BUG: check that the frame image has been initialized Fixes 0003535 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22786 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file e7102b54 2013-12-17 18:42:15 Details Diff |
ENH: Add prototype LandmarkRegistration and CompareVolumes modules These are still work-in-progress modules, but should be usable to support interatcive registration. See https://github.com/pieper/LandmarkRegistration git-svn-id: http://svn.slicer.org/Slicer4/trunk@22785 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file a44d8757 2013-12-17 16:05:36 Details Diff |
COMP: Remove 'python_install_chmod_library' external project install step Since the transition to CMake'ified python, this extra step is not required anymore because the installed file has the expected permissions. Because the timestamp of the library is not systematically modified, it will avoid the systematic recompilation of all project linking against python library and speed up the overall MacOSX developer experience. Before the update: [...] -- Installing: /path/to/python-install/lib/python2.7/zipfile.py Performing python_install_chmod_library step for 'python' Performing python_customPython_configure step for 'python' Completed 'python' $ ls -als python-install/lib/ total 3688 0 drwxr-xr-x 5 kitware staff 170 Dec 17 16:00 . 0 drwxr-xr-x 6 kitware staff 204 Dec 17 16:00 .. 3688 -rwxr-xr-x 1 kitware staff 1886288 Dec 17 16:00 libpython2.7.dylib 0 drwxr-xr-x 5 kitware staff 170 Dec 17 16:00 pkgconfig 0 drwxr-xr-x 234 kitware staff 7956 Dec 17 16:00 python2.7 After the update: [...] -- Installing: /path/to/python-install/lib/python2.7/zipfile.py [ 18%] Performing python_customPython_configure step for 'python' [ 18%] Completed 'python' $ ls -als python-install/lib/ total 3688 0 drwxr-xr-x 5 kitware staff 170 Dec 17 16:02 . 0 drwxr-xr-x 6 kitware staff 204 Dec 17 16:02 .. 3688 -rwxr-xr-x 1 kitware staff 1886288 Dec 17 16:02 libpython2.7.dylib 0 drwxr-xr-x 5 kitware staff 170 Dec 17 16:02 pkgconfig 0 drwxr-xr-x 234 kitware staff 7956 Dec 17 16:02 python2.7 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22784 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild/External_python.cmake | Diff File | ||
|
2145-support-for-installing-extension-from-file 35f3bf01 2013-12-17 12:09:54 Details Diff |
COMP: Fix build issue 0003522 due to nice() and getpid() calls. From: Junichi Tokuda <tokuda@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22783 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/Logic/vtkSlicerApplicationLogic.cxx | Diff File | ||
|
2145-support-for-installing-extension-from-file 10f2c02c 2013-12-17 12:09:05 Details Diff |
BUG: Fix "No handleSslErrors" slot run time error Since by default moc (MetaObject compiler) doesn't understand ifdef, let simply expect that SSL headers are available and unconditionally include the "handleSslErrors". For this to work, we would have to associated a compile definition with moc. Since the QSslError header was already unconditionally included, defining the slot is not a problem. Error was: Object::connect: No such slot qSlicerWebWidget::handleSslErrors(QNetworkReply*, const QList<QSslError> & ) in /home/jchris/Projects/Slicer/Base/QTGUI/qSlicerWebWidget.cxx:99 Object::connect: (receiver name: 'qSlicerWebWidget') From: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22782 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - Base/QTGUI/qSlicerWebWidget.cxx | Diff File | ||
| mod - Base/QTGUI/qSlicerWebWidget.h | Diff File | ||
|
2145-support-for-installing-extension-from-file eb412957 2013-12-17 10:16:17 Details Diff |
COMP: Fix configuration adding missing parameter to ExternalProject_Add_Source Following commit r22776, the macro ExternalProject_Add_Source has been added and jqPlot retrieved using it but the URL and URL_MD5 parameters were not considered. This probably happens because the jqPlot directory was already existing. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22781 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - CMake/ExternalProjectAddSource.cmake | Diff File | ||
