Changesets: Slicer
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2145-support-for-installing-extension-from-file 4f826091 2014-01-17 10:22:56 Details Diff |
COMP: Use PATCH_COMMAND to set python project patch step Using PATCH_STEP was preventing python from being configured, using PATCH_COMMAND is the only documented way of associating a patch step with an external project. See http://www.cmake.org/cmake/help/v2.8.12/cmake.html#module:ExternalProject See 0003158 git-svn-id: http://svn.slicer.org/Slicer4/trunk@22830 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_python.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file ffcfd7cd 2014-01-17 02:32:31 Details Diff |
COMP: Specify python patch step only if MSVC variable is True git-svn-id: http://svn.slicer.org/Slicer4/trunk@22829 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_python.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 98ce8bcc 2014-01-17 02:32:28 Details Diff |
COMP: Properly pass parameter to python_patch.cmake git-svn-id: http://svn.slicer.org/Slicer4/trunk@22828 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_python.cmake | Diff File | ||
| mod - SuperBuild/python_patch.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 8c0c90dc 2014-01-17 01:43:19 Details Diff |
COMP: 0003158 fix NUMPY build on Visual Studio 2010/2012 Patch Python distutils to avoid using a manifest as discussed here: http://mail.scipy.org/pipermail/numpy-discussion/2012-November/064488.html From: Isaiah Norton <inorton@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22827 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_python.cmake | Diff File | ||
| add - SuperBuild/python_patch.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 5177aa3e 2014-01-17 00:18:48 Details Diff |
COMP: Fix typo introduced in previous commit git-svn-id: http://svn.slicer.org/Slicer4/trunk@22826 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file 1f5e5cbc 2014-01-17 00:13:37 Details Diff |
COMP: Associate FiberBundleToLabelMap module with BUILD_DIFFUSION_SUPPORT git-svn-id: http://svn.slicer.org/Slicer4/trunk@22825 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file 57dabfd6 2014-01-16 19:07:20 Details Diff |
COMP: Update ExternalProjectDependency based on commontk/Artichoke@da5367b $ git shortlog 243982e..da5367b Jean-Christophe Fillion-Robin (1): Fix typo preventing additional external project from being considered git-svn-id: http://svn.slicer.org/Slicer4/trunk@22824 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/ExternalProjectDependency.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file b3a442ec 2014-01-14 18:10:56 Details Diff |
BUG: avoid spurious warnings from DataProbe during startup Make sure the frame member of the widget is set before setting up observers to avoid a situation where the processEvents is called before setup is complete. This avoids some spurious warning messages during startup. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22823 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DataProbe/DataProbe.py | Diff File | ||
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2145-support-for-installing-extension-from-file adf97a4c 2014-01-14 14:45:40 Details Diff |
COMP: Fix configuration of Slicer against system python When building against system python, the pydicom module won't be installed at configure/build time. A Slicer runtime test could be added to check if expected python module are available. Thanks to "Dominique Belhachemi <domibel@debian.org>" for reporting the problem. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22822 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_pydicom.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file c9eb2585 2014-01-14 14:24:28 Details Diff |
COMP: Revert - vtkPichonFastMarching - Replace finite() with isfinite()" This reverts commit r22819 isfinite() function is not available on windows 2008: 20>47>..\..\..\..\..\..\Slicer4\Modules\Scripted\EditorLib\Logic\vtkPichonFastMarchingPDF.cxx(193) : error C3861: 'isfinite': identifier not found git-svn-id: http://svn.slicer.org/Slicer4/trunk@22821 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/EditorLib/Logic/vtkPichonFastMarching.cxx | Diff File | ||
| mod - Modules/Scripted/EditorLib/Logic/vtkPichonFastMarchingPDF.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file a6f420a2 2014-01-14 13:58:25 Details Diff |
COMP: C++11 require space between string constants C++11 now allows for custom type specifiers so needs a space when two string constants are to be concatenated. Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22820 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/qSlicerCoreApplication.cxx | Diff File | ||
| mod - Base/QTCore/qSlicerCorePythonManager.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 486fa12b 2014-01-14 13:58:22 Details Diff |
COMP: vtkPichonFastMarching - Replace finite() with isfinite() finite() is not universally in the c standard. isfinite is support in all c compilers since c99. As of Mac 10.9 under clang, finite() issues a warning that it will be deprecated and that the standards conforming isfinite() should be used. From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22819 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/EditorLib/Logic/vtkPichonFastMarching.cxx | Diff File | ||
| mod - Modules/Scripted/EditorLib/Logic/vtkPichonFastMarchingPDF.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file b9dbe4e7 2014-01-14 13:58:18 Details Diff |
COMP: vtkTeem - Remove cmake configuration warning CMake Warning (dev) in Libs/vtkTeem/CMakeLists.txt: Syntax Warning in cmake code at Slicer/Libs/vtkTeem/CMakeLists.txt:21:55 Argument not separated from preceding token by whitespace. From: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22818 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/vtkTeem/CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file 4065dd32 2014-01-14 10:56:54 Details Diff |
BUG: BRAINSTools should not be built when CLIs are disabled From: Andrey Fedorov <fedorov@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22817 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Remote/CMakeLists.txt | Diff File | ||
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2145-support-for-installing-extension-from-file cbcc5277 2014-01-12 15:24:40 Details Diff |
COMP: expose the displable manager and other MRML libs in python The MRMLDisplayableManager code is needed to access the picker from a python module. This feature was added to support DTI/Tractography processing tools being written by Lauren O'Donnel. From: Steve Pieper <pieper@isomics.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22816 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/mrml.py | Diff File | ||
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2145-support-for-installing-extension-from-file f21ed6c5 2014-01-12 15:24:38 Details Diff |
ENH: Add 'pydicom' python module as external project. "pydicom is a pure python package for working with DICOM files. It was made for inspecting and modifying DICOM data in an easy "pythonic" way. The modifications can be written again to a new file. As a pure python package, it should run anywhere python runs without any other requirements. pydicom is not a DICOM server, and is not primarily about viewing images. It is designed to let you manipulate data elements in DICOM files with python code. Limitations -- the main limitation of the current version is that compressed pixel data (e.g. JPEG) cannot be altered in an intelligent way as it can for uncompressed pixels. Files can always be read and saved, but compressed pixel data cannot easily be modified." See http://code.google.com/p/pydicom/ The module being licensed under MIT license, it is compatible with the Slicer BSD like license. Co-authored-by: Andriy Fedorov <fedorov@bwh.harvard.edu> From: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22815 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
| add - SuperBuild/External_pydicom.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 75050e1a 2014-01-10 15:24:16 Details Diff |
BUG: Add escape sequence to quotes in CMake string From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22814 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Extensions/CMake/SlicerFunctionGenerateExtensionDescription.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file f17589f8 2014-01-10 15:24:10 Details Diff |
BUG: Protect FilterWatcher from Progress before Start events If the ShowProgress method is executed as an observer before StartFilter method the ITK time probe will be stopped before the it's started. This causes an exception. This case is just caught and ignored. From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22813 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/CLI/itkPluginFilterWatcher.h | Diff File | ||
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2145-support-for-installing-extension-from-file 1e9c716d 2014-01-10 14:18:13 Details Diff |
COMP: Fix loading of external "loadable module" providing python script Thanks to "Wang, Kevin" <kevin.wang@rmp.uhn.on.ca> for his help identifying and testing the changes. Co-authored-by: Wang, Kevin" <kevin.wang@rmp.uhn.on.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22812 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Extensions/CMake/SlicerBlockAdditionalLauncherSettings.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file aea1198a 2014-01-09 19:33:34 naucoin Details Diff |
ENH: add a new color node, continous around 0.0 Add a method to create a new procedural color node that's useful for visualizing error statistics centered around 0, called RedGreenBlue. Rename AddRandomNode to AddDefaultProceduralNodes and add the RandomIntegers as well as the new RedGreenBlue node in it. This will provide a space to add new default procedural color nodes. Create a new color node category, Continuous, and place the new node in it. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22811 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Logic/vtkMRMLColorLogic.cxx | Diff File | ||
| mod - Libs/MRML/Logic/vtkMRMLColorLogic.h | Diff File | ||
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2145-support-for-installing-extension-from-file 73622dc9 2014-01-09 18:43:47 naucoin Details Diff |
BUG: use vtkNew for copied look up tables Use vtkNew to define new color look up table and color transfer function for copying to the actor's mapper for models. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22810 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkMRMLModelDisplayableManager.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file cf8359c6 2014-01-08 19:38:29 naucoin Details Diff |
BUG: Allow assigning procedural color nodes to map scalars Previously the GUI assumed that color table nodes only were used to map scalars to colors onto model geometry. This change generalises the color node selector to allow both color table nodes as well as procedural color nodes. Renamed the widget and methods to reflect the generalisation. Only set the scalar widgets if they don't match the model display node settings. Added a label displaying the scalar range. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22809 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Models/Widgets/Resources/UI/qMRMLModelDisplayNodeWidget.ui | Diff File | ||
| mod - Modules/Loadable/Models/Widgets/qMRMLModelDisplayNodeWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Models/Widgets/qMRMLModelDisplayNodeWidget.h | Diff File | ||
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2145-support-for-installing-extension-from-file 266dea02 2014-01-08 19:22:16 naucoin Details Diff |
BUG: check for color transfer functions first Procedural color nodes may have color look up tables defined, check for that node class first and if it has a color transfer function, use it on the model instead. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22808 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkMRMLModelDisplayableManager.cxx | Diff File | ||
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2145-support-for-installing-extension-from-file 59968e40 2014-01-08 12:27:18 Details Diff |
COMP: Modern gcc compilers have a reasonable template depth limit Current gcc compilers have a reasonable max default template depth. The -ftemplate-depth-50 flag was removed. This limited any application which used ITK to only a template depth of 50. Based on InsightSoftwareConsortium/ITK@5bcca741 From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@22807 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/ITKPlatformSpecificChecks.cmake | Diff File | ||
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2145-support-for-installing-extension-from-file 4c57a60c 2014-01-08 11:43:45 Details Diff |
COMP: Ensure Slicer_RemoteModule_Add worked when source directory is passed Configuring Slicer with -D<projectname>_SOURCE_DIR:PATH=/path/to/projectname is now supported. Thanks to Bradley Lowekamp <blowekamp@mail.nih.gov> for reporting the issue. git-svn-id: http://svn.slicer.org/Slicer4/trunk@22806 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/ExternalProjectAddSource.cmake | Diff File | ||
