Changesets: Slicer

2145-support-for-installing-extension-from-file 30976793

2013-08-18 17:51:10

mccormic

Details Diff
COMP: Use Module_ITKReview instead of ITK_USE_REVIEW.

ITK_USE_REVIEW is deprecated.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22292 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_ITKv4.cmake Diff File

2145-support-for-installing-extension-from-file 7e4bfac1

2013-08-18 17:14:58

jcfr

Details Diff
BUG: Update default module icon color

Commit r22288 associated a default icon with all modules. Then, as
suggested by Wendy Plesniak this commit changes the icon color to
be "SlicerBlue".

See 0003293

Co-authored-by: Wendy Plesniak <wjp@bwh.harvard.edu>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22291 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/Resources/Icons/Extension.png Diff File

2145-support-for-installing-extension-from-file 7f34abd4

2013-08-16 11:10:48

alexy

Details Diff
BUG: 3018. Fixed matrix multiplication order in vtkMRMLLinearTransformNode::ApplyTransformMatrix

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22290 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/vtkMRMLLinearTransformNode.cxx Diff File

2145-support-for-installing-extension-from-file 94e0fe57

2013-08-16 10:33:17

finetjul

Details Diff
BUG: Fix opengl refresh frame issue on windows

Closes 0003118, 0002815

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22289 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_VTK.cmake Diff File

2145-support-for-installing-extension-from-file dd0d76a9

2013-08-15 18:38:49

jcfr

Details Diff
BUG: Associate default icon with all modules.

Doing so will allow module to be added to the module toolbar by updating
the list of favorite modules in the application settings.

Fixes 0003293

Co-authored-by: Julien Finet <julien.finet@kitware.com>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22288 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/Resources/Icons/Extension.png Diff File
mod - Base/QTGUI/qSlicerAbstractModule.cxx Diff File
mod - Base/QTGUI/qSlicerScriptedLoadableModule.cxx Diff File

2145-support-for-installing-extension-from-file 3dfc9bbb

2013-08-15 10:30:52

pieper

Details Diff
STYLE: fix compile warnings, unused variables, (un)signed, trailing spaces

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22287 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/FreeSurfer/vtkFSSurfaceLabelReader.cxx Diff File
mod - Libs/vtkTeem/vtkDiffusionTensorGlyph.cxx Diff File
mod - Libs/vtkTeem/vtkDiffusionTensorMathematics.cxx Diff File
mod - Modules/CLI/DWIJointRicianLMMSEFilter/DWIJointRicianLMMSEFilter.cxx Diff File
mod - Modules/CLI/DWIRicianLMMSEFilter/DWIRicianLMMSEFilter.cxx Diff File
mod - Modules/CLI/DWIUnbiasedNonLocalMeansFilter/DWIUnbiasedNonLocalMeansFilter.cxx Diff File
mod - Modules/CLI/ExtractSkeleton/SkelGraph.cxx Diff File
mod - Modules/CLI/N4ITKBiasFieldCorrection/N4ITKBiasFieldCorrection.cxx Diff File

2145-support-for-installing-extension-from-file 7b734860

2013-08-13 15:40:24

alexy

Details Diff
ENH: 3228. Added preset parameters to TractographyInteractiveSeeding module for compatibility with Slicer3 Fiducial Seeding and Slicer3 Labelmap Seeding.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22286 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/TractographyInteractiveSeeding/Logic/vtkMRMLTractographyInteractiveSeedingNode.cxx Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/Logic/vtkMRMLTractographyInteractiveSeedingNode.h Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/Resources/UI/qSlicerTractographyInteractiveSeedingModuleWidget.ui Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/qSlicerTractographyInteractiveSeedingModuleWidget.cxx Diff File
mod - Modules/Loadable/TractographyInteractiveSeeding/qSlicerTractographyInteractiveSeedingModuleWidget.h Diff File

2145-support-for-installing-extension-from-file 4fbe8f46

2013-08-13 14:52:04

pieper

Details Diff
STYLE: fix warnings about signed/unsigned mismatches

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22285 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/Testing/vtkMRMLDisplayableNodeTest1.cxx Diff File
mod - Libs/MRML/DisplayableManager/vtkMRMLVolumeGlyphSliceDisplayableManager.cxx Diff File

2145-support-for-installing-extension-from-file 43e3a2c8

2013-08-13 12:05:47

lassoan

Details Diff
BUG: Fixed excessive memory consumption in the undo/redo buffer of the Editor module (http://www.na-mic.org/Bug/view.php?id=3283)

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22284 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/EditorLib/Logic/vtkImageStash.cxx Diff File

2145-support-for-installing-extension-from-file 41f3daf1

2013-08-12 09:21:41

finetjul

Details Diff
BUG: Fix crash when using slicer dark style

When painting a tab, Cleanlooks style expects to have a gradient in the
Window palette brush when it finds a gradient in the Button palette
brush.
Issue 0003251

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22283 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/qSlicerDarkStyle.cxx Diff File

2145-support-for-installing-extension-from-file a60cec7a

2013-08-09 15:50:53

finetjul

Details Diff
BUG: Support volume origin and spacing larger than 100000

Issue 0003010 @0009428

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22282 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/Resources/UI/qMRMLVolumeInfoWidget.ui Diff File
mod - SuperBuild/External_CTK.cmake Diff File

2145-support-for-installing-extension-from-file 807ee8bc

2013-08-09 15:50:51

finetjul

Details Diff
BUG: Keep precision in ctkDoubleSpinBox

Issue 0003261

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22281 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_CTK.cmake Diff File

2145-support-for-installing-extension-from-file 676bf9bb

2013-08-09 15:50:49

finetjul

Details Diff
ENH: Apply units to Ruler node measurement labels

Issue 0001694

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22280 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/vtkMRMLUnitNode.cxx Diff File
mod - Libs/MRML/Core/vtkMRMLUnitNode.h Diff File
mod - Libs/MRML/Widgets/qMRMLCoordinatesWidget.h Diff File
mod - Libs/MRML/Widgets/qMRMLSliderWidget.h Diff File
mod - Modules/Loadable/Annotations/GUI/qSlicerAnnotationModulePropertyDialog.cxx Diff File
mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationRulerDisplayableManager.cxx Diff File
mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationRulerDisplayableManager.h Diff File
mod - Modules/Loadable/Annotations/Resources/UI/qSlicerAnnotationModulePropertyDialog.ui Diff File
mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationRulerRepresentation3D.cxx Diff File

2145-support-for-installing-extension-from-file a607ac79

2013-08-09 15:50:45

finetjul

Details Diff
BUG: Fix decimals in ctkCoordinatesWidget

Issue 0002973

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22279 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_CTK.cmake Diff File

2145-support-for-installing-extension-from-file 36bd2edc

2013-08-09 15:50:43

finetjul

Details Diff
ENH: Add coefficient and offset support in unit's settings and widgets.

Issue 0001694

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22278 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/vtkMRMLUnitNode.cxx Diff File
mod - Libs/MRML/Widgets/Resources/UI/qMRMLVolumeInfoWidget.ui Diff File
mod - Libs/MRML/Widgets/qMRMLCoordinatesWidget.cxx Diff File
mod - Libs/MRML/Widgets/qMRMLCoordinatesWidget.h Diff File
mod - Libs/MRML/Widgets/qMRMLSliceControllerWidget.cxx Diff File
mod - Libs/MRML/Widgets/qMRMLSliderWidget.cxx Diff File
mod - Libs/MRML/Widgets/qMRMLSliderWidget.h Diff File
mod - Libs/MRML/Widgets/qMRMLSpinBox.cxx Diff File
mod - Libs/MRML/Widgets/qMRMLSpinBox.h Diff File
mod - Modules/Loadable/Annotations/Resources/UI/qSlicerAnnotationModulePropertyDialog.ui Diff File
mod - Modules/Loadable/Units/Logic/vtkSlicerUnitsLogic.cxx Diff File
mod - Modules/Loadable/Units/Logic/vtkSlicerUnitsLogic.h Diff File
mod - Modules/Loadable/Units/Widgets/Resources/UI/qMRMLUnitWidget.ui Diff File
mod - Modules/Loadable/Units/Widgets/qMRMLUnitWidget.cxx Diff File
mod - Modules/Loadable/Units/Widgets/qMRMLUnitWidget.h Diff File
mod - Modules/Loadable/Units/qSlicerUnitsSettingsPanel.cxx Diff File
mod - SuperBuild/External_CTK.cmake Diff File

2145-support-for-installing-extension-from-file 468e54fe

2013-08-09 15:43:34

alexy

Details Diff
BUG: 1636. Log an Error on ROI rotation attempt (since current ROI implementation do not support local CS rotation). Propagate transform change events on ROI transform hardening.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22277 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/MRML/vtkMRMLAnnotationROINode.cxx Diff File
mod - Modules/Loadable/Annotations/MRMLDM/vtkMRMLAnnotationROIDisplayableManager.cxx Diff File

2145-support-for-installing-extension-from-file dafa4f3e

2013-08-09 13:58:08

alexy

Details Diff
ENH: added progress event to SeedStreamlinesInROI

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22276 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/vtkTeem/vtkSeedTracts.cxx Diff File

2145-support-for-installing-extension-from-file 243f9964

2013-08-09 13:55:35

fedorov

Details Diff
BUG: modify the process of populating loadables table in DICOM widget to ensure that each loadable is added only once by selecting relevant loadables before adding them to the table; resolves issue 0003282


git-svn-id: http://svn.slicer.org/Slicer4/trunk@22275 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/DICOM/DICOMLib/DICOMWidgets.py Diff File

2145-support-for-installing-extension-from-file ec6dff4e

2013-08-09 13:18:57

fedorov

Details Diff
BUG: enable parsing of multi-series multivolumes by AcquisitionTime tag


git-svn-id: http://svn.slicer.org/Slicer4/trunk@22274 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_MultiVolumeImporter.cmake Diff File

2145-support-for-installing-extension-from-file 8c53d089

2013-08-09 10:12:42

pieper

Details Diff
BUG: 0001832 0003140 0003209 avoid crashes by catching exceptions

Some libraries and systems throw exceptions, but Qt's default
event processing does not catch them[1]. For example, slicer
could crash when ctkDICOMItem is pointed to a file that does
not exist. Wrapping event processing in try/catch should handle
other conditions, like out of memory exceptions thrown from
inside render operations (e.g. due to overly complex glyph
rendering).

[1] http://qt-project.org/doc/qt-4.8/exceptionsafety.html

http://stackoverflow.com/questions/10665655/how-to-log-uncatched-exceptions-of-a-qapplication

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22273 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/qSlicerApplication.cxx Diff File
mod - Base/QTGUI/qSlicerApplication.h Diff File

2145-support-for-installing-extension-from-file 0baac1d1

2013-08-09 10:12:40

pieper

Details Diff
STYLE: remove some trailing spaces

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22272 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/qSlicerApplication.h Diff File

2145-support-for-installing-extension-from-file c31b11a7

2013-08-08 23:36:22

pohl

Details Diff
BUG: tmp files with extension .raw were not removed

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22271 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_EMSegment.cmake Diff File

2145-support-for-installing-extension-from-file d269a581

2013-08-08 13:08:07

finetjul

Details Diff
BUG: Fix inactive button color for dark style

Issue 0003251

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22270 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/qSlicerDarkStyle.cxx Diff File

2145-support-for-installing-extension-from-file af8109e3

2013-08-08 01:22:12

finetjul

Details Diff
ENH: Improve Dark style

Issue 0003251

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22269 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/qSlicerDarkStyle.cxx Diff File
rm - Modules/Loadable/Annotations/Resources/Icons/Data.png Diff File
mod - Modules/Loadable/Annotations/Resources/qSlicerAnnotationModule.qrc Diff File
mod - Modules/Loadable/Data/Resources/Icons/Data.png Diff File
mod - Modules/Loadable/SlicerWelcome/Resources/Images/WelcomeLogo.png Diff File
mod - Modules/Loadable/Transforms/Resources/Icons/Transforms.png Diff File
mod - Resources/Logos/Slicer3.png Diff File

2145-support-for-installing-extension-from-file 7d5af3e8

2013-08-07 17:00:18

pieper

Details Diff
BUG: fix size of paint cursor on rotated acquisitions

Make sure to use a column of the rasToXY matrix that is in the plane
of the zoom. This is needed because the slice node's field of view
in Z does not reflect the in-plane zoom.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22268 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Scripted/EditorLib/PaintEffect.py Diff File
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