Changesets: Import 2017-06-07 23:51:09
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master f199fdb2 2014-09-10 14:23:15 Details Diff |
BUG: Fix packaging of libtk8.6.dylib on MacOSX. Fixes 0003822 This commit fixes a regression introduced by r23613 (attempts to address 0003809 by updating tcl version) Tk 8.6 build system has a known problem building the tk shared library. To ensure fixup_bundle properly process the _tkinter.so python module, we implemented the following workaround to fix the library id. For more details http://sourceforge.net/p/tcl/mailman/message/30354096/ http://na-mic.org/Mantis/view.php?id=3822 git-svn-id: http://svn.slicer.org/Slicer4/trunk@23667 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_tk.cmake | Diff File | ||
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master a7d724b3 2014-09-10 12:17:24 Details Diff |
BUG: Add rpath to DCMTK application when building MacOSX package. Fixes 0003827 While commit addresses issue 0003827, the problem applies for the other executable bundled in the ./Slicer.app/Contents/bin directory. A more general solution would have to be implemented to also fix these. This is captured by issue 0003831 git-svn-id: http://svn.slicer.org/Slicer4/trunk@23666 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/SlicerBlockInstallDCMTKApps.cmake | Diff File | ||
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master 723c5ef2 2014-09-10 03:05:08 Details Diff |
BUG: Proceed to MarkupsFiducial picking manager configuration only for VTK6. This commit fixes regression introduced in r23648 that was preventing Slicer from being compiled against VTK5. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23665 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Markups/MRMLDM/vtkMRMLMarkupsFiducialDisplayableManager2D.cxx | Diff File | ||
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master da7d6a00 2014-09-10 02:13:08 Details Diff |
ENH: Update ITKv4 version to current release branch (7c3a15e-2014-09-03) $ git shortlog 372991d..7c3a15ebc --no-merges Bradley Lowekamp (2): BUG: Use METER of sCAL scale unit BUG: Use PNG_SCALE_METER for PNG sCAL unit Christopher Mullins (1): COMP: Allows latex to compile for ITKSoftwareGuide KWSys Robot (2): KWSys 2014-07-18 (65b36ede) KWSys 2014-08-04 (e787837a) Matthew McCormick (9): BUG: Fix alpha assignment for RGBA TIFF. BUG: Improve thread-safety and performance of PCAShapeSignedDistanceFunction. DOC: itk::statistics -> itk::Statistics. DOC: Remove duplicate text in LaplacianRecursiveGaussian example. DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx. BUG: TransformFileReader does not clear its TransformList. BUG: Prevent dangling pointer in HDF5TransformIO. COMP: Fix missing prefix in ITKv3ImageRegistration20Test. BUG: Do not return SmartPointers in TimeVaryingVelocityFieldTransform git-svn-id: http://svn.slicer.org/Slicer4/trunk@23664 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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master ef991e2b 2014-09-09 17:03:03 Details Diff |
ENH: Remove unused method Register/UnRegisterExtraBuiltInFactories Originally introduced in r2733, after previous commit, these methods are not needed anymore. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23663 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx | Diff File | ||
| mod - Libs/vtkITK/vtkITKArchetypeImageSeriesReader.h | Diff File | ||
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master 39c8f1cc 2014-09-09 17:02:49 Details Diff |
ENH: In ITK 4.6, ImageIO GE5 is now registered by default. No need to manually register the GE5 ImageIO because as of ITK 4.6 it is registered by default with ITK. Let's note the GE IO module is enabled by default and there is not need to explicitly enable it when configuring ITK. See InsightSoftwareConsortium/ITK@80cacdc Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23662 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx | Diff File | ||
| mod - Libs/vtkITK/vtkITKArchetypeImageSeriesReader.h | Diff File | ||
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master 80102a30 2014-09-09 16:56:52 Details Diff |
ENH: Change required ITK version from 4.5 to 4.6 Starting with r23373 ITK 4.6.x is used to build and test Slicer. $ git shortlog c127db8..6b5fa1a SuperBuild/External_ITKv4.cmake jcfr (8): ENH: Update (1) ITKv4 from v4.5.2 to v4.6rc01 and (2) update BRAINSTools BUG: Update ITKv4 project to backport fix related to GDCMIO BUG: Update ITKv4 - Attempt to fix ResampleDTI tests COMP: Update ITKv4 - Fix "unused-local-typedefs" warning COMP: Move most of find_package calls into each Slicer sub-project. ENH: Move ITKv4 towards 4.6.0rc20140719 ENH: Update ITKv4 and BRAINSTools BUG: Update ITKv4 and BRAINSTools - BRAINSFit performance improvement. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23661 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/CLI/CMakeLists.txt | Diff File | ||
| mod - Base/Logic/CMakeLists.txt | Diff File | ||
| mod - Base/QTCLI/CMakeLists.txt | Diff File | ||
| mod - Base/QTCore/CMakeLists.txt | Diff File | ||
| mod - Extensions/Testing/CLIExtensionTemplate/CLIModuleTemplate/CMakeLists.txt | Diff File | ||
| mod - Extensions/Testing/SuperBuildExtensionTemplate/SuperCLIModuleTemplate/CMakeLists.txt | Diff File | ||
| mod - Libs/ITKFactoryRegistration/CMakeLists.txt | Diff File | ||
| mod - Libs/MGHImageIO/CMakeLists.txt | Diff File | ||
| mod - Libs/MRML/CLI/CMakeLists.txt | Diff File | ||
| mod - Libs/MRML/Core/CMakeLists.txt | Diff File | ||
| mod - Libs/MRML/IDImageIO/CMakeLists.txt | Diff File | ||
| mod - Libs/MRML/Logic/Testing/Cxx/CMakeLists.txt | Diff File | ||
| mod - Libs/vtkITK/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/AddScalarVolumes/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/BSplineToDeformationField/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/BlobDetection/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/CastScalarVolume/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/CheckerBoardFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ConnectedComponent/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/CreateDICOMSeries/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/CurvatureAnisotropicDiffusion/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/DTIImportExport/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/DWIJointRicianLMMSEFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/DWIRicianLMMSEFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/DWIUnbiasedNonLocalMeansFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/DiffusionTensorTest/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ExtractSkeleton/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/FiducialRegistration/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/GaussianBlurImageFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/GradientAnisotropicDiffusion/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/GrayscaleFillHoleImageFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/GrayscaleGrindPeakImageFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/HistogramMatching/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ImageLabelCombine/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/LabelMapSmoothing/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/MaskScalarVolume/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/MedianImageFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ModelToLabelMap/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/MultiplyScalarVolumes/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/N4ITKBiasFieldCorrection/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/OrientScalarVolume/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/PETStandardUptakeValueComputation/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ResampleScalarVectorDWIVolume/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ResampleScalarVolume/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/RobustStatisticsSegmenter/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/SimpleRegionGrowingSegmentation/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/SubtractScalarVolumes/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/TestGridTransformRegistration/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/ThresholdScalarVolume/CMakeLists.txt | Diff File | ||
| mod - Modules/CLI/VotingBinaryHoleFillingImageFilter/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/VolumeRendering/Testing/Cxx/CMakeLists.txt | Diff File | ||
| mod - Modules/Loadable/Volumes/Testing/Cxx/CMakeLists.txt | Diff File | ||
| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
| mod - Utilities/Templates/Modules/CLI/CMakeLists.txt | Diff File | ||
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master 908faa29 2014-09-09 15:54:01 Details Diff |
ENH: Remove ITK AnalyzeImageIO registration Originally introduced in r824, the ITK AnalyzeImageIO have been deprecated. The NIFTI ImageIO implementation is now able to read analyze .img or .hdr files as well as the original Analyze ImageIO. From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23660 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx | Diff File | ||
| mod - Modules/CLI/ModelToLabelMap/ModelToLabelMap.cxx | Diff File | ||
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master 8eded2d0 2014-09-08 03:08:36 Details Diff |
BUG: Fix crash in AddArchetypeScalarVolume checking MRMLScene validity git-svn-id: http://svn.slicer.org/Slicer4/trunk@23659 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Volumes/Logic/vtkSlicerVolumesLogic.cxx | Diff File | ||
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master f9d3983a 2014-09-08 03:08:33 Details Diff |
ENH: slicer.util: Update getNode methods to optionally use a custom scene This is particularly useful to retrieve node from a scene different from the main slicer scene. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23658 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/util.py | Diff File | ||
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master 1c9a2e15 2014-09-06 16:28:02 Details Diff |
ENH: Added a test for the ExtractSkeleton CLI. Fixes 0003333 Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Dirk Padfield <padfield@ge.com> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23657 3bd1e089-480b-0410-8dfb-8563597acbee |
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| add - Modules/CLI/ExtractSkeleton/Data/Baseline/ExtractSkeletonTest.mha.md5 | Diff File | ||
| add - Modules/CLI/ExtractSkeleton/Data/Input/ExtractSkeleton.mha.md5 | Diff File | ||
| mod - Modules/CLI/ExtractSkeleton/Testing/CMakeLists.txt | Diff File | ||
| add - Modules/CLI/ExtractSkeleton/Testing/ExtractSkeletonTest.cxx | Diff File | ||
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master 86bc6a0b 2014-09-06 15:29:46 Details Diff |
BUG: 3808: fix failing test - add some pointer checks Fixes regression detected here: http://slicer.cdash.org/testDetails.php?test=5704490&build=266935 From: Steve Pieper <pieper@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23656 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Markups/MRMLDM/vtkMRMLMarkupsFiducialDisplayableManager2D.cxx | Diff File | ||
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master 004f4ff9 2014-09-06 13:08:11 Details Diff |
ENH: Update LandmarkRegistration and CompareVolumes Several improvements to the documentation and features. From: Steve Pieper <pieper@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23655 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master c940099d 2014-09-06 13:07:23 Details Diff |
ENH: improve the script template by adding documentation link From: Steve Pieper <pieper@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23654 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/ScriptedLoadableModule.py | Diff File | ||
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master bff7dcef 2014-09-06 13:07:21 Details Diff |
ENH: upgrade CompareVolumes commit 583d4a78b0b2b9609e023b5a37f64ed154e0d180 Author: Steve Pieper <pieper@bwh.harvard.edu> Date: Thu Aug 28 19:03:29 2014 -0400 Add lightbox render mode and extra controls commit 1370b2bf6990db182cb12bc23bfaa414af3f1278 Author: Steve Pieper <pieper@bwh.harvard.edu> Date: Thu Aug 28 14:41:01 2014 -0400 Fix issue with cursor not being turned back on after reveal From: Steve Pieper <pieper@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23653 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master e4bb773f 2014-09-05 18:00:17 Details Diff |
ENH: Update GetCoefficientImage to GetCoeffiecientImages Function renamed, and only available with ITKv3 compatibility. From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23652 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkBSplineImageToImageRegistrationMethod.txx | Diff File | ||
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master fe35e00e 2014-09-05 18:00:15 Details Diff |
ENH: Update to Testing::ComparisionImageFilter Update deprecated usage of ComparisonImageFilter to TestingComparisonImageFilter. Migration: http://itk.org/migrationv4/index.php?action=artikel&cat=3&id=113&artlang=en&highlight=ComparisonImageFilter From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23651 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/CLI/Testing/itkTestMain.h | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/ITKRegistrationHelper/itkImageToImageRegistrationHelper.txx | Diff File | ||
| mod - Modules/CLI/ExpertAutomatedRegistration/itkImageToImageRegistrationMethodTestingHelper.h | Diff File | ||
| mod - Modules/CLI/ResampleDTIVolume/Testing/itkTestMainExtended.h | Diff File | ||
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master 10f84b0a 2014-09-05 17:30:31 Details Diff |
COMP: Update VTK to reference updated Slicer/VTK fork. Issue 0003808 Steve changes related to issue 0003808 have been integrated into the Slicer/VTK fork and this commit updates the external project accordingly. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23650 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master 6c526794 2014-09-05 16:58:45 Details Diff |
ENH: fixed issue 0002771 kill preivious storescp executables The new logic will get the os process list and if (other) storescps are on the list, it would warn the user and through a dialog asks for killing these executables. The start listener button is checkable now and it is only checked when the listner is running. From: Alireza Mehrtash <mehrtash@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23649 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DICOM/DICOM.py | Diff File | ||
| mod - Modules/Scripted/DICOM/DICOMLib/DICOMProcesses.py | Diff File | ||
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master 538e54dc 2014-09-05 16:16:45 Details Diff |
BUG: fixes for 3808 fiducial picking issue See http://na-mic.org/Bug/view.php?id=3808 Note that fixing this requires the corresponding fixes to VTKv6 and LandmarkRegistration https://github.com/pieper/LandmarkRegistration/commit/d9393f515b4798d9904fdd0383d959b91fc1edfb https://github.com/pieper/VTK/commit/f3d6cc2503375724e60dd73d9a93ba9c764be26e COMP: fix repository url and error macro usage From: Steve Pieper <pieper@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23648 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Markups/MRMLDM/vtkMRMLMarkupsFiducialDisplayableManager2D.cxx | Diff File | ||
| mod - SuperBuild.cmake | Diff File | ||
| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master 9b8099df 2014-09-05 12:00:21 Details Diff |
ENH: add a testing clickAndDrag utility to the scripted module git-svn-id: http://svn.slicer.org/Slicer4/trunk@23647 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/ScriptedLoadableModule.py | Diff File | ||
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master 3f00c4a0 2014-09-05 12:00:20 Details Diff |
STYLE: add comments to SampleData class git-svn-id: http://svn.slicer.org/Slicer4/trunk@23646 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/SampleData/SampleData.py | Diff File | ||
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master d40d55d7 2014-09-03 17:17:51 Details Diff |
BUG: Fixed slice annotation not displayed for patient names containing international characters Error log before the fix: [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - Traceback (most recent call last): [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - File "C:/S4D/Slicer-build/lib/Slicer-4.3/qt-scripted-modules\DataProbeLib\SliceViewAnnotations.py", line 594, in updateCornerAnnotations [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - self.makeAnnotationText(caller) [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - File "C:/S4D/Slicer-build/lib/Slicer-4.3/qt-scripted-modules\DataProbeLib\SliceViewAnnotations.py", line 825, in makeAnnotationText [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - self.drawCornerAnnotations() [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - File "C:/S4D/Slicer-build/lib/Slicer-4.3/qt-scripted-modules\DataProbeLib\SliceViewAnnotations.py", line 976, in drawCornerAnnotations [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - sliceCornerAnnotation.SetText(i, cornerAnnotation) [INFO][Stream] 03.09.2014 17:00:41 [] (unknown:0) - TypeError: SetText argument 2: (unicode conversion error) git-svn-id: http://svn.slicer.org/Slicer4/trunk@23645 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DataProbe/DataProbeLib/SliceViewAnnotations.py | Diff File | ||
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master 5298ed7f 2014-09-03 13:41:56 Details Diff |
BUG: disabled calcDFVolumeNode as it calls a BRAINS function that does not work git-svn-id: http://svn.slicer.org/Slicer4/trunk@23644 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master c515fc05 2014-09-03 11:08:39 Details Diff |
ENH: Moved error log copying to separate error reporting dialog Error reporting dialog accessible from menu: Help / Report a bug From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23643 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/CMakeLists.txt | Diff File | ||
| add - Applications/SlicerApp/Resources/UI/qSlicerAppErrorReportDialog.ui | Diff File | ||
| mod - Applications/SlicerApp/Resources/UI/qSlicerAppMainWindow.ui | Diff File | ||
| mod - Applications/SlicerApp/Testing/Cpp/CMakeLists.txt | Diff File | ||
| add - Applications/SlicerApp/Testing/Cpp/qSlicerAppErrorReportDialogTest1.cxx | Diff File | ||
| add - Applications/SlicerApp/qSlicerAppErrorReportDialog.cxx | Diff File | ||
| add - Applications/SlicerApp/qSlicerAppErrorReportDialog.h | Diff File | ||
| mod - Applications/SlicerApp/qSlicerAppMainWindow.cxx | Diff File | ||
| mod - Base/QTGUI/Resources/UI/qSlicerSettingsDeveloperPanel.ui | Diff File | ||
| mod - Base/QTGUI/qSlicerSettingsDeveloperPanel.cxx | Diff File | ||
| mod - Base/QTGUI/qSlicerSettingsDeveloperPanel.h | Diff File | ||
