0003827: library paths incorrect on mac install package - can't run dicom executables - MantisBT

ID	Project	Category	View Status	Date Submitted	Last Update

0003827	Slicer4	Core: Packaging	public	2014-09-07 12:02	2018-05-23 04:30

Reporter	pieper	Assigned To	jcfr
Priority	normal	Severity	block	Reproducibility	always
Status	closed	Resolution	fixed
Product Version
Target Version	Slicer 4.4.0	Fixed in Version	Slicer 4.4.0

Summary	0003827: library paths incorrect on mac install package - can't run dicom executables
Description	When you try to turn on the DICOM Listener on mac you get an error message about libdcmnet.3.dylib not being found. The file is part of the package, but it is not in the spot expected by the application.
Additional Information	starting DICOM listener (u'Starting /Users/pieper/Desktop/Slicer-4.3.1-2014-09-03.app/Contents/bin/storescp with ', ['11112', '--output-directory', u'/Users/pieper/bt/data/NSCLC-Radiomics+Genomics/dicom-database/incoming', '--exec-sync', '--exec-on-reception', u'/Users/pieper/Desktop/Slicer-4.3.1-2014-09-03.app/Contents/bin/dcmdump --load-short --print-short --print-filename --search PatientName "/Users/pieper/bt/data/NSCLC-Radiomics+Genomics/dicom-database/incoming/#f"']) process /Users/pieper/Desktop/Slicer-4.3.1-2014-09-03.app/Contents/bin/storescp now in state Starting process /Users/pieper/Desktop/Slicer-4.3.1-2014-09-03.app/Contents/bin/storescp now in state Running process /Users/pieper/Desktop/Slicer-4.3.1-2014-09-03.app/Contents/bin/storescp now in state NotRunning error code is: 1 standard out is: standard error is: dyld: Library not loaded: @rpath/lib/Slicer-4.3/libdcmnet.3.dylib Referenced from: /Users/pieper/Desktop/Slicer-4.3.1-2014-09-03.app/Contents/bin/storescp Reason: image not found
Tags	No tags attached.

pieper 2014-09-07 12:07 administrator ~0012476	Note that a workaround for this is to set the path manually: export DYLD_LIBRARY_PATH=/Users/pieper/Desktop/Slicer-4.3.1-2014-09-03.app/Contents/lib/Slicer-4.3

jcfr 2014-09-07 12:11 administrator ~0012477	Thanks for the report. I think the fix will be to build the DCMTK executable with flag like "-Wl,-rpath,@loader_path/../../../" as it is already done for the CLIs [1] Will have to determine the number of "../" to specify .. [1] https://github.com/Slicer/Slicer/blob/1c9a2e15be5a5867030d377cbd294aad34d095f7/SuperBuild/External_SlicerExecutionModel.cmake#L25

pieper 2014-09-07 12:12 administrator ~0012478	Thanks Jc!

jcfr 2014-09-10 08:31 administrator ~0012489	Fixed in r23666 See http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=23666

Import 2017-06-07 23:51:09: master a7d724b3 2014-09-10 12:17:24 jcfr Details Diff	BUG: Add rpath to DCMTK application when building MacOSX package. Fixes 0003827 While commit addresses issue 0003827, the problem applies for the other executable bundled in the ./Slicer.app/Contents/bin directory. A more general solution would have to be implemented to also fix these. This is captured by issue 0003831 git-svn-id: http://svn.slicer.org/Slicer4/trunk@23666 3bd1e089-480b-0410-8dfb-8563597acbee
	mod - CMake/SlicerBlockInstallDCMTKApps.cmake		Diff File

Date Modified	Username	Field	Change
2014-09-07 12:02	pieper	New Issue
2014-09-07 12:02	pieper	Status	new => assigned
2014-09-07 12:02	pieper	Assigned To	=> jcfr
2014-09-07 12:07	pieper	Note Added: 0012476
2014-09-07 12:11	jcfr	Note Added: 0012477
2014-09-07 12:11	jcfr	Status	assigned => acknowledged
2014-09-07 12:12	pieper	Note Added: 0012478
2014-09-10 08:30	jcfr	Relationship added	related to 0003831
2014-09-10 08:31	jcfr	Note Added: 0012489
2014-09-10 08:31	jcfr	Status	acknowledged => resolved
2014-09-10 08:31	jcfr	Fixed in Version	=> Slicer 4.4.0
2014-09-10 08:31	jcfr	Resolution	open => fixed
2014-09-17 22:57	jcfr	Status	resolved => closed
2017-06-10 08:51	jcfr	Changeset attached	=> Slicer master a7d724b3
2018-05-23 04:30	jcfr	Relationship added	related to 0004554