Changesets: Slicer

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1683-launcher-with-output c002692d

2012-10-22 14:06:14

jcfr

Details Diff 		BUG: Avoid "EMS* node already registered" when starting Slicer

See http://www.na-mic.org/Bug/view.php?id=2625
and http://viewvc.slicer.org/viewvc.cgi/Slicer3?view=revision&revision=17018

Fixes 0002625

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21222 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_EMSegment.cmake Diff File

1683-launcher-with-output 236e1d57

2012-10-22 14:04:47

fedorov

Details Diff 		BUG: do not recognize as valid multivolumes multi-frame datasets that do not have consistent origin (see issue 2501)


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21221 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_MultiVolumeImporter.cmake Diff File

1683-launcher-with-output ff43f43f

2012-10-22 12:06:13

naucoin

Details Diff 		BUG: hook up the line width widget

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21220 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/GUI/qSlicerAnnotationModulePropertyDialog.cxx Diff File

1683-launcher-with-output 91540d46

2012-10-20 00:22:13

finetjul

Details Diff 		BUG: Restore GPU Raycast volume mapper for new Mac OS X version

VTK issue #10716

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21219 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_VTK.cmake Diff File

1683-launcher-with-output 565ec0d7

2012-10-19 16:23:17

naucoin

Details Diff 		BUG: issue 0002666 Don't render annotation nodes, they're handled by the annotation displayble managers. Fixes issue of seeing a red line that was connecting the annotation control points, fixing bug introduced after svn 21159

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21218 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/DisplayableManager/vtkMRMLModelDisplayableManager.cxx Diff File

1683-launcher-with-output 90584525

2012-10-19 14:16:46

jcfr

Details Diff 		STYLE: Simplify vtkAnnotationRulerWidget::CreateDefaultRepresentation

Based on suggestion of Julien

See 0002664 / http://www.na-mic.org/Bug/view.php?id=2664

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21217 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationRulerWidget.cxx Diff File
mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationRulerWidget.h Diff File

1683-launcher-with-output 61207725

2012-10-19 10:04:29

jcfr

Details Diff 		COMP: Ensure CMAKE_{C,CXX}_COMPILER is passed when building extensions custom target

See http://www.na-mic.org/Bug/view.php?id=2657

Fixes 0002657

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21216 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Extensions/CMake/SlicerBlockBuildPackageAndUploadExtension.cmake Diff File
mod - Extensions/CMake/SlicerBlockUploadExtension.cmake Diff File

1683-launcher-with-output 132bb20a

2012-10-18 20:21:07

jcfr

Details Diff 		BUG: Ensure ruler widget is properly created when switching to compare view

In the case of the annotation displayable manager, calling "SetMRMLScene"
ended up calling OnMRMLSceneClose -> RequestRender -> UpdateFromMRML -> CreateWidget.
Then, since MRMLDisplayableNode wasn't set, code expecting it to be set
wasn't behaving as expected. (ie Is2DDisplayableManager was returning false)

Since the call to "vtkSetAndObserveMRMLNodeEventsMacro" was no impact
beyond the current class, switching the call "vtkSetAndObserveMRMLNodeEventsMacro"
and "SetMRMLScene" will have no unexpected impact on subclass or code
depending on the displayable manager.

See http://www.na-mic.org/Bug/view.php?id=2496

Fixes 0002496

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21215 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/DisplayableManager/vtkMRMLAbstractDisplayableManager.cxx Diff File

1683-launcher-with-output 5fd34f4d

2012-10-18 20:21:06

jcfr

Details Diff 		BUG: Update vtkAnnotationRulerWidget to adequately distinguish 2D and 3D case

Add functions "GetIs2Widget" and "SetIs2DWidget" allowing to build
the appropriate representation.

Note that calling "SetIs2DWidget" after a representation has been built
as a no-op.

See http://www.na-mic.org/Bug/view.php?id=2664

Fixes 0002664

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21214 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/MRMLDisplayableManager/vtkMRMLAnnotationRulerDisplayableManager.cxx Diff File
mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationRulerWidget.cxx Diff File
mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationRulerWidget.h Diff File

1683-launcher-with-output a3d8edfb

2012-10-18 18:36:02

jcfr

Details Diff 		BUG: Use "GetMRMLDisplayableNode" instead of using redundant member m_SliceNode

See 0002664 / http://www.na-mic.org/Bug/view.php?id=2664

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21213 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/MRMLDisplayableManager/vtkMRMLAnnotationDisplayableManager.cxx Diff File
mod - Modules/Loadable/Annotations/MRMLDisplayableManager/vtkMRMLAnnotationDisplayableManager.h Diff File

1683-launcher-with-output 56376324

2012-10-18 18:16:18

naucoin

Details Diff 		BUG: issue 0002664 avoid a crash stemming from the wrong 2d/3d check for the ruler widget. Use the superclass to avoid a null pointer on safe down cast

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21212 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Modules/Loadable/Annotations/VTKWidgets/vtkAnnotationRulerWidget.cxx Diff File

1683-launcher-with-output ad584f51

2012-10-18 15:10:01

jcfr

Details Diff 		BUG: Display "Usage" and "Options" when using installed MacOSX Slicer executable

See http://www.na-mic.org/Bug/view.php?id=2376

Fixes 0002376

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21211 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTCore/qSlicerCoreApplication.cxx Diff File

1683-launcher-with-output 5b08d1b4

2012-10-18 15:09:59

jcfr

Details Diff 		ENH: Using "--settings-path" output text an all platform

See http://www.na-mic.org/Bug/view.php?id=2376

Fixes 0002376

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21210 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/CMakeLists.txt Diff File

1683-launcher-with-output 08ae4885

2012-10-18 09:21:11

pieper

Details Diff 		BUG: fix wrapping of MRML scene API

The StateType enum is not wrapped for access via python, so
it should not be used in a public API for slicer. Instead,
we use unsigned long, which is the convention used, for example,
in vtkCommand and vtkObject.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21209 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/vtkMRMLScene.cxx Diff File
mod - Libs/MRML/Core/vtkMRMLScene.h Diff File

1683-launcher-with-output 53e2875d

2012-10-17 18:48:19

jcfr

Details Diff 		BUG: Ensure __file__ attribute is defined when running python script

See http://www.na-mic.org/Bug/view.php?id=2649

Fixes 0002649

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21208 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTGUI/qSlicerScriptedLoadableModule.cxx Diff File
mod - Base/QTGUI/qSlicerScriptedLoadableModuleWidget.cxx Diff File
mod - SuperBuild/External_CTK.cmake Diff File

1683-launcher-with-output 66f93d84

2012-10-17 14:41:12

jcfr

Details Diff 		COMP: Remove empty directory

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21207 3bd1e089-480b-0410-8dfb-8563597acbee

1683-launcher-with-output fe2a0881

2012-10-17 14:38:58

jcfr

Details Diff 		COMP: Remove unused CLI/Java directory

The associated code has been moved into the Slicer "Attic".
See https://github.com/Slicer/Attic/commit/1889649f20bf3ec2b9adc9f26c973954ce821e38

See http://www.na-mic.org/Bug/view.php?id=2651

Fixes 0002651

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21206 3bd1e089-480b-0410-8dfb-8563597acbee
rm - Modules/CLI/Java/CMakeLists.txt Diff File
rm - Modules/CLI/Java/Examples/HelloWorldApp.java Diff File
rm - Modules/CLI/Java/HelloWorld.tcl Diff File
rm - Modules/CLI/Java/SPECTRE.tcl Diff File
mod - SuperBuild.cmake Diff File

1683-launcher-with-output 22ef996e

2012-10-17 14:32:13

finetjul

Details Diff 		COMP: Partially fix rendering view refresh area on Windows

The git tag update was done in the wrong external project.
This reverts commit r21204.
Issue 0002630

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21205 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_CTK.cmake Diff File
mod - SuperBuild/External_VTK.cmake Diff File

1683-launcher-with-output f6f5fdeb

2012-10-17 13:25:34

finetjul

Details Diff 		BUG: Partially fix rendering view refresh area on Windows

On my machine, I have the old cached image that shows up under the
closing view controller popup.

Closes 0002630

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21204 3bd1e089-480b-0410-8dfb-8563597acbee
mod - SuperBuild/External_CTK.cmake Diff File

1683-launcher-with-output 99e59081

2012-10-17 12:21:58

jcfr

Details Diff 		ENH: Move initialization function from Main.cxx to qSlicerApplicationHelper

The idea is to promote re-use of the initialization function and avoid
code duplication.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21203 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Main.cxx Diff File
mod - Base/QTApp/qSlicerApplicationHelper.cxx Diff File
mod - Base/QTApp/qSlicerApplicationHelper.h Diff File

1683-launcher-with-output 3fcfa20d

2012-10-16 19:12:20

sankhesh

Details Diff 		ENH: 2592 Renamed TractographyFiducialSeedingModule

Renamed the module directory as well as all references to the module

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21202 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Applications/SlicerApp/Data/Input/DiffusionTensorImagingTutorial.xml Diff File
mod - Applications/SlicerApp/Data/Input/NeurosurgicalPlanningTutorial.xml Diff File
mod - Modules/Loadable/CMakeLists.txt Diff File
rm - Modules/Loadable/TractographyFiducialSeeding/qSlicerTractographyFiducialSeedingModule.h Diff File
add - Modules/Loadable/TractographyInteractiveSeeding/qSlicerTractographyInteractiveSeedingModule.h Diff File

1683-launcher-with-output d195e7b2

2012-10-16 17:23:11

jcfr

Details Diff 		BUG: User arguments associated python unit tests are added last.

The issue was that by using "--additional-module-paths" with a "s" it
will prevent the parameter "--python-code" from being properly parsed.
Indeed, the command line parser will think that it is an additional
module path.

The root cause of the problem lies into ctkCommandLineParser and
is captured by issue https://github.com/commontk/CTK/issues/243

Thanks to Csaba Pinter for identifiying the issue and contributing a patch.

See http://na-mic.org/Mantis/view.php?id=2652

Fixes 0002652

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21201 3bd1e089-480b-0410-8dfb-8563597acbee
mod - CMake/SlicerMacroPythonTesting.cmake Diff File

1683-launcher-with-output 4bfdbba6

2012-10-16 15:39:23

jcfr

Details Diff 		BUG: Fix windows assert associated with extension tests

To ensure existing tests pass, the Cxx folder has been added to the list
of sub dirs to consider when looking up IntDir.

That said, the recommended solution is to set the target property
RUNTIME_OUTPUT_DIRECTORY for the test executable. The value of this property
should be ${CMAKE_BINARY_DIR}/${Slicer_BIN_DIR}

See http://na-mic.org/Mantis/view.php?id=2348

Fixes 0002348

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21200 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Base/QTCore/qSlicerCoreApplication.cxx Diff File
mod - CMakeLists.txt Diff File
mod - Extensions/Testing/LoadableExtensionTemplate/Testing/Cxx/CMakeLists.txt Diff File
mod - Extensions/Testing/SuperBuildLoadableExtensionTemplate/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Annotations/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Cameras/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Colors/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/CropVolume/Testing/CMakeLists.txt Diff File
mod - Modules/Loadable/Data/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/DoubleArrays/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Measurements/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Models/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/MultiVolumeRendering/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Reformat/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/SceneViews/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/SlicerWelcome/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/TractographyDisplay/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/TractographyFiducialSeeding/Testing/CMakeLists.txt Diff File
mod - Modules/Loadable/Transforms/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/ViewControllers/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/VolumeRendering/Testing/Cxx/CMakeLists.txt Diff File
mod - Modules/Loadable/Volumes/Testing/Cxx/CMakeLists.txt Diff File

1683-launcher-with-output e9cab9c5

2012-10-16 15:36:12

jcfr

Details Diff 		BUG: Update midas_api_escape_for_url to urlencode all recommended characters

This is commit improve the url encoding of parameter for sake of completeness
only. It doesn't fix the problem.

It resumes that URL passed as parameter to the midas api can't have any
ampersand. Indeed, the value following the ampersand will be considered
as a parameter of the API call itself.

See 0002643 / http://www.na-mic.org/Bug/view.php?id=2643

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21199 3bd1e089-480b-0410-8dfb-8563597acbee
mod - CMake/MIDASAPILogin.cmake Diff File

1683-launcher-with-output 638f2782

2012-10-16 12:56:05

sankhesh

Details Diff 		BUG: 2584 Rotation sliders not affected by node change

Fixed range of rotation sliders to -180,180.
Range of rotation sliders not affected by OnMRMLTransformNodeModified
event.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21198 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Widgets/qMRMLTransformSliders.cxx Diff File
mod - Modules/Loadable/Transforms/Resources/UI/qSlicerTransformsModule.ui Diff File
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