Changesets: Import 2017-06-07 23:51:09
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master 1c6ad362 2014-09-01 23:09:44 Details Diff |
BUG: seriesNumber tag was not initialized, leading to series parsing failure git-svn-id: http://svn.slicer.org/Slicer4/trunk@23642 3bd1e089-480b-0410-8dfb-8563597acbee |
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master df1344a7 2014-09-01 18:46:38 Details Diff |
ENH: Added option to copy log file contents Available in application settings / Developer panel From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23641 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/Resources/UI/qSlicerSettingsDeveloperPanel.ui | Diff File | ||
| mod - Base/QTGUI/qSlicerApplication.cxx | Diff File | ||
| mod - Base/QTGUI/qSlicerApplication.h | Diff File | ||
| mod - Base/QTGUI/qSlicerSettingsDeveloperPanel.cxx | Diff File | ||
| mod - Base/QTGUI/qSlicerSettingsDeveloperPanel.h | Diff File | ||
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master 3a55aab2 2014-09-01 17:52:34 Details Diff |
BUG: Tests failed bc BRAINS non-rigid registration took too long; EMSegmenter failed if the auto sampling of covariance matrix resulted in 0 entries in the diagonal; Add info to error message to simplify tracing down the issue; Changed one of the Tests so that they only perform affine registration; Fixed naming convention for atlases that are loaded in through api instead of mrml git-svn-id: http://svn.slicer.org/Slicer4/trunk@23640 3bd1e089-480b-0410-8dfb-8563597acbee |
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master 1c10718f 2014-08-30 22:45:34 Details Diff |
BUG: EditBox: Ensure state variable are initialized before calling "create()" This commit fixes regression introduced by r23636. The following tests are now passing: * py_StandaloneEditorWidgetTest * py_ThresholdThreadingTest * py_NeurosurgicalPlanningTutorialMarkupsSelfTest The associated error was: Traceback (most recent call last): File "/path/to/Slicer-build/lib/Slicer-4.3/qt-scripted-modules/Editor.py", line 244, in setup self.createEditBox() File "/path/to/Slicer-build/lib/Slicer-4.3/qt-scripted-modules/Editor.py", line 280, in createEditBox self.toolsBox = EditorLib.EditBox(self.editBoxFrame, optionsFrame=self.effectOptionsFrame) File "/path/to/Slicer-build/lib/Slicer-4.3/qt-scripted-modules/EditorLib/EditBox.py", line 74, in __init__ self.create() File "/path/to/Slicer-build/lib/Slicer-4.3/qt-scripted-modules/EditorLib/EditBox.py", line 289, in create self._onParameterNodeModified(self.editUtil.getParameterNode()) File "/path/to/Slicer-build/lib/Slicer-4.3/qt-scripted-modules/EditorLib/EditBox.py", line 105, in _onParameterNodeModified self._onEffectChanged(caller.GetParameter("effect")) File "/path/to/Slicer-build/lib/Slicer-4.3/qt-scripted-modules/EditorLib/EditBox.py", line 336, in _onEffectChanged if self.currentOption: AttributeError: 'EditBox' object has no attribute 'currentOption' git-svn-id: http://svn.slicer.org/Slicer4/trunk@23639 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/EditorLib/EditBox.py | Diff File | ||
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master cc7e6208 2014-08-29 20:51:01 Details Diff |
BUG: Integrated BRAINSTransformConvert as original cmd did not work with BRAINS anymore git-svn-id: http://svn.slicer.org/Slicer4/trunk@23638 3bd1e089-480b-0410-8dfb-8563597acbee |
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master 035d5db9 2014-08-29 17:36:48 Details Diff |
ENH: Allow BRAINSTransformConvert without output transform file $ git shortlog 68303b3..4fb59c3 Kent Williams (1): COMP: Allow BRAINSTransformConvert without output transform file git-svn-id: http://svn.slicer.org/Slicer4/trunk@23637 3bd1e089-480b-0410-8dfb-8563597acbee |
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master f301707f 2014-08-29 15:01:53 Details Diff |
ENH: Editor: Effects are checkable and updated based on the parameter node This commit ensures the button effect are checked or unchecked based on the 'effect' property stored in the parameter node. It also extends the EditUtil API adding function allowing to more easily set and get the 'EraseLabel' state. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23636 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/EditorLib/EditBox.py | Diff File | ||
| mod - Modules/Scripted/EditorLib/EditUtil.py | Diff File | ||
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master ea1c8437 2014-08-29 15:01:50 Details Diff |
ENH: EditBox: Simplify observation introducing the use of VTKObservationMixin git-svn-id: http://svn.slicer.org/Slicer4/trunk@23635 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/EditorLib/EditBox.py | Diff File | ||
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master 8c560275 2014-08-29 15:01:48 Details Diff |
ENH: slicer.util: Add NodeModify context manager This commit adds a convenience context manager allowing to easily disable modified event associated with a node, and automatically re-enable them and invoking them if it applies. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23634 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/util.py | Diff File | ||
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master 5b633cb7 2014-08-29 14:44:15 Details Diff |
COMP: Add python executable path to build tree launcher PATH settings. This commit will allow to directly use python executable after starting a terminal using "./Slicer --gnome-terminal" or after setting the Slicer environment. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23633 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/SlicerBlockCTKAppLauncherSettings.cmake | Diff File | ||
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master cbdf4554 2014-08-29 14:23:48 Details Diff |
COMP: Always set SOURCE_DIR variable for CLI modules This commit will allow ResampleScalarVectorDWIVolume to be built even if ResampleDTI is disabled. This is needed because ResampleScalarVectorDWIVolume references the source of ResampleDTI using the variable ResampleDTI_SOURCE_DIR git-svn-id: http://svn.slicer.org/Slicer4/trunk@23632 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/CLI/CMakeLists.txt | Diff File | ||
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master 63abf9ae 2014-08-29 14:23:46 Details Diff |
ENH: slicer.util.VTKObservationMixin: removeObservers now accept no params The method 'removeObservers' allows to easily remove all observers without specifying all the method one by one. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23631 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/Python/slicer/util.py | Diff File | ||
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master 8c998394 2014-08-28 06:46:35 Details Diff |
COMP: Update VTK to fix windows compiler error $ git shortlog 0a186e2..003cbd4 --no-merges Jean-Christophe Fillion-Robin (1): python: Fix vtkWrapPython compiler error ensuring type declaration are first. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23630 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master 8b48b5cf 2014-08-28 02:22:30 Details Diff |
BUG: Update VTK to include fixes for VTK kits wrapping. Issue 0003809 $ git shortlog 898e51a..0a186e2 --no-merges Jean-Christophe Fillion-Robin (3): python: Update wrapping tool to support multiple hierarchy files python: Do not create a new hints file if a kit bundles only one module python: Update vtkWrapPython to add mutable object when building kit git-svn-id: http://svn.slicer.org/Slicer4/trunk@23629 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master 571cdf93 2014-08-27 18:39:24 Details Diff |
ENH: Fixed issues 3579, 3798 and other dicom browser improvements Improvements: * Added the table density control to the slicer dicom browser for controlling table densities in three levels: comact, cozy and comfortable. The default value would be compact. Changing the settings would be saved in slicer user settings. * Re-arranged the patient, study and series search boxex so that the search box will be on the top of tables for both horizontal and vertical cases (This will add more space to dicom tables) tables) * The bug with browser size change on advanced view is fixed (issue 0003798) * The feature to resize tables based on contents was added to the tables. From: Alireza Mehrtash <mehrtash@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23628 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DICOM/DICOM.py | Diff File | ||
| mod - Modules/Scripted/DICOM/DICOMLib/DICOMWidgets.py | Diff File | ||
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master 6b5fa1a4 2014-08-27 15:51:35 Details Diff |
BUG: Update ITKv4 and BRAINSTools - BRAINSFit performance improvement. (1) This commit updates the tag to use ITK release branch as of 2014-08-16 and integrate the two patches improving MattesMutualInformation metric provided by Hans and Ali. (2) It also update the version of BRAINS to use the master branch as of 2014-08-27. More specifically, it updates the BRAINSFit xml code to have a new set of default parameters for the LBFGSB optimizerv4. Let's note that it excludes the commit re-organizing find_package(VTK) calls. These changes would have to be integrated when Slicer itself will be re-organizing its call to find_package(VTK...) For sake of completeness, here are the comments reported by Ali: [BEGIN-ALI-COMMENT] Although an enormous speed improvement to the previous versions of Mattes metric and BRAINSFitv4, the current version of BRAINSFit is still slower than the old BRAINSFitv3 by a factor of 1.7 if both are run by their default parameters. The factor 1.7 is computed by averaging over running times of several experiments that are different in the number of used samples. In the case of the experiments reported in this google doc (choosing 100,000 for the number of samples): Registration process is converged in 1 min 35 sec in BRAINSFitv3 using default parameters for BSpline registration. Registration process is converged in 2 min 46 sec in BRAINSFitv4 using default parameters for BSpline registration. Also, an independent Mattes metric was used after the registration process to compare the outputs of ITKv3 and ITKv4 registrations with the input fixed atlas image. It generated -0.773 and -0.757 for the outputs of BFitv3 and BFitv4 respectively that are different by %2.1. [1] https://docs.google.com/document/d/1j8Hy3di54YG42Nr7MGPDWn2XJIAF1oFzC17iV-LJGWI/edit [END-ALI-COMMENT] This work has been possible by having the following people working together (in alphabetical order): Ali Ghayoor <ali-ghayoor@uiowa.edu> Andras Lasso <lasso@queensu.ca> Bradley Lowekamp <blowekamp@mail.nih.gov> Csaba Pinter <csaba.pinter@queensu.ca> Hans Johnson <hans-johnson@uiowa.edu> Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> Kent Williams <norman-k-williams@uiowa.edu> Kevin Wang <kevin.wang@rmp.uhn.on.ca> Kilian Pohl <pohl.kilian@gmail.com> Matt McCormick <matt.mccormick@kitware.com> Steve Pieper <pieper@bwh.harvard.edu> //----------- ITKv4 changes //----------- $ git shortlog 3147239..372991d --no-merges Brad King (1): COMP: Fix vxl_config_macros usage of CMake check macros Hans Johnson (2): PERF: Revert Remove large foot print of PDF derivatives. PERF: Distribute initialization per thread buffers Matthew McCormick (1): BUG: Fix Nifti IO read with large images. //----------------- BRAINSTools changes //----------------- $ git shortlog dd996be..68303b3 --no-merges Ali Ghayoor (10): ENH: Use BSplineTransformInitializer for BSpline Registration BUG: fix BRAINSFitTest_ROIBSpline test failure BUG: fix BRAINSFitTest_ROIBSpline test failure ENH: Add observer for BSpline regsitration in BRAINSFitv4 ENH: Print selective parameters in BSpline observer ENH: Generalize the legacy PerformTestMMI ENH: Add lbfgsb optimizer parameters to commandline BUG: fix ROIBSpline test failure in linux system ENH: Use a new default parameters set for LBFGSBoptv4 COMP: Updated ITK tag to BRAINSiaITK David Welch (6): BUG: Fixed typo in singleSession for T2 passing to inputSpec of segmentation workflow ENH: Added commandline option to use T1 as sentinal file (off by default) BUG: VIRTUALENV option is optional BUG: Fixed typo in configFileParser.py STYLE: Ran autopep8 on AutoWorkup.py ENH: Added commandline testing for configFileParser.py ENH: CLUSTER config section included in ENV section BUG: Deprecated local processing until code can be updated Hans Johnson (5): ENH: Remove outdated and non-functioning md5 files. ENH: Added Sentinal output file checking for Workflows STYLE: Only give debugging information when requested ENH: Add logic for better skipping ENH: Add new Mattes Mutual Information implementation. Jean-Christophe Fillion-Robin (2): Revert "COMP: fine-tune VTK dependencies" Revert "COMP: move find_package(VTK) down to individual project directories" Kent Williams (4): COMP: move find_package(VTK) down to individual project directories COMP: Switch back to official ITK repo COMP: Silence warnings COMP: fine-tune VTK dependencies git-svn-id: http://svn.slicer.org/Slicer4/trunk@23627 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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master 708cc498 2014-08-27 14:34:10 Details Diff |
BUG: Update VTK and re-enable KITS on Windows/Linux. Issue 0003809 This commit updates VTK to basically include commit Slicer/VTK@fbcabbf VTK kit module are now wrapped similarly to module and this fixes the issue preventing some VTK object from being available. Before this change, if a KIT was bundling module A, B, C. Only the object associated with object A where available from an install tree. After this commit all objects will be available. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23626 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master 965585f1 2014-08-26 22:54:28 Details Diff |
BUG: Enable VTK_ENABLE_KITS only on MacOSX. Issue 0003809 On Linux, enabling VTK_ENABLE_KITS prevent the vtk package from being properly imported from an install tree. For example, the "vtk.vtkTextActor" is not available after starting Slicer from an install tree. On the other hand, after Slicer is started, doing the following allow to access the 'vtkTextActor': import vtk.vtkRenderingKit vtk.vtkRenderingKit.vtkTextActor git-svn-id: http://svn.slicer.org/Slicer4/trunk@23625 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master c0d5b824 2014-08-26 20:29:21 Details Diff |
BUG: Fix qSlicerPersistentCookieJarTester Cookie file is not expected to exist. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23624 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/Testing/Cxx/qSlicerPersistentCookieJarTest.cxx | Diff File | ||
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master 9d87f17e 2014-08-26 19:56:34 Details Diff |
ENH: Remove slice annotations popup startup dialog. Following discussing on the mailing list [1], the additional startup dialog (originally introduced by r23612) is rather confusing and is removed by this commit. [1] http://slicer-devel.65872.n3.nabble.com/Slice-annotations-comments-tp4032290p4032333.html From: Alireza Mehrtash <mehrtash@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23623 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/qSlicerAppMainWindow.cxx | Diff File | ||
| mod - Applications/SlicerApp/qSlicerAppMainWindow.h | Diff File | ||
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master 3005329a 2014-08-26 19:41:20 Details Diff |
BUG: Update version of VTK to use VTK_ENABLE_KITS. Issue 0003809 This commit updates to the latest version of VTK including Slicer specific patches (branch: slicer-v6.2.0-7167ad1_2014-08-21) Additionally: * Update VTK to include kit support for VTK python modules. * Tweak vtkMacroKitPythonWrap to consider VTK kits. * Enable VTK_ENABLE_KITS only if CMake >= 3 * Explicitly specify vtkRenderingContextOpenGL. Basically following kitware/VTK@c5121871, the OpenGL override for vtkContextDevice2D has been moved int Rendering/ContextOpenGL, we have to make sure that we link to vtkRenderingContextOpenGL. See [1] for more info. [1] http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Factories_now_require_defines // -------------------------------- $ git shortlog df24b795..e59c76c --no-merges Ben Boeckel (1): python: split wrapping functions Jean-Christophe Fillion-Robin (5): python: Add wrapping of kits if VTK_ENABLE_KITS is ON modules: Re-order RenderingOpenGL libraries to fix VTK_ENABLE_KIT link error python: Update python module dependency to account for VTK_ENABLE_KITS python: Configure PythonInit file for kit when VTK_ENABLE_KITS is ON python: Add VTK_ENABLE_KITS to VTKConfig // --------------------------------- $ git shortlog slicer/slicer-v6.1.0..df24b795 --no-merges Andrew Bauer (8): Need to check for static targets before adding abi visibility flags. Composite data writers weren't passing down the HeaderType info. Passing missing parallel writer options to piece writers. Fixing overflow issue that appeared with GCC compilers. Fix the way point and cell data arrays are marked for reading. Adding in arctan2 through numpy. Adding the ability to not delete the passed in arrays. Fixed memory leak in test and added in comments for clarification. Andrew Maclean (8): Remove WindowLevelInterface.tcl and WindowLevelInterface.py Revert Remove WindowLevelInterface.tcl and WindowLevelInterface.py Sphere widget behaves better when scaled down to zero ENH: VTK Parametric surfaces - modernised the code. ENH: Remove the need to manually regenerate the hill data. DOC: Update vtkRandomHills documentation. BUG: Fix by adding a new keyword. ENH: Add option to return an ordinal lookup table. Antonio Cervone (1): Fixed the BiQuadraticQuad interpolator Ben Boeckel (117): STLWriter: Raise an error for non-triangles STLReader: Close the file when an error occurs ExodusIIReader: Add the title to the field data STLReader: Fix error signaling when reading files AVIWriter: Don't overflow the fourcc storage AVIWriter: Fix a comment typo Exodus: Always attach the title to the output fields Rewrite the testing macros Update the Cxx test call sites Update the MPI test call sites Update the Python test call sites Update Tcl test call sites Minor CMake logic simplification Copy Statistics tests to StatisticsGnuR Infovis: Add an include for newer Boost versions ParallelMPI: Add missing return statement Allow arguments to be passed directly to Python Skip adding the executable if no tests are created Allow for overriding the data directory in tests Allow overriding the baseline directory in tests Build the VTK test data directory properly Support custom baselines in tests Store VTK's ExternalData in its source directory Support VTKExternalData_OBJECT_STORES as well Support custom ExternalData targets for tests Support flags to tests common at the module level Support JUST_VALID for Python tests Support Python+MPI testing Use VTK_TEST_OUTPUT_DIR rather than rebuilding the path examples: Fix typo in testing calls ParallelGeometry: Fix Grid symbol scoping testing: Use vtk-example as a fallback for prefix Fix test function signatures testing: Don't look for tests when making an executable FiltersGeometry: Remove unnecessary links Filters/Geometry: Remove some unused functions from tests Filters/Geometry: Hide WriteGrid if ENABLE_IO isn't on testing: add some missing TEST_DEPENDS pythoncore: extract python objects from arguments wrapping: add function to check for Python objects wrapping: wrap PyObject* in python code python: accept any argument for PyObject* arguments vtkAlgorithm: fix a typo FiltersPython: create a vtkPythonAlgorithm class python: fix leaks when setting constants in wrappers vtkPythonAlgorithm: support older pythons vtkpython: add site-packages to the path vtkFiltersPython: Disable without Python wrapping wrapping: add variables to exclude from language-specific wrapping vtkFiltersPython: exclude from Java and Tcl wrapping java: get the list of java modules properly testing: append the tests to the given variable pythonalg: use keyword arguments rather than members pythonalg: raise an error in RequestData by default wrapping: remove the ${module}_WRAP_PYTHON variable vtkStructuredImplicitConnectivity: fix msvc warnings typo: fix some typos unused: remove unused functions mpi4py: add module information mpi4py: link to CMAKE_DL_LIBS testing: skip test executables with no tests IOVPIC: include MPI headers as SYSTEM headers cmake: set policy 0053 if available cmake: set policy 0053 in thirdparty cmake mpi4py: add a class to convert communicators wrapping: check for Tcl wrapping exclusion for warnings vtkAMRUtilities: split out vtkParallelAMRUtilities hierarchy: use a .txt extension GenerateExportHeader: support object libraries as well vtk_module: support a KIT argument modules: add modules to "kits" linking: wrap tll() with a module-aware function export: OBJECT libraries may not be exported modules: output kit information in the module tree modules: topo-sort modules with kits as well modules: build kits from the member modules module: depend on the dependent module object library python: add an option to disable vtkpython testing: check for pvtkpython before using it vtkpython: don't install if not enabled vtkAVIWriter: make a more informative error message IO/Geometry: add obj index tests FiltersParallelGeometry: move functions to the sources vtkMPICommunicator: avoid deprecated MPI functions vtkInstantiator: remove instantiator macro from main sources typo: remove duplicate source listing vtkCompositePolyDataMapper2: cache opacity check vtkCompositePolyDataMapper2: include <algorithm> for std::max vtkCompositePolyDataMapper2: avoid a NULL dereference OpenGL: use STATUS for the OSMesa message vtkPStreamTracer: conditionalize functions vtkPTemporalStreamTracer: remove useless code unused: add a macro to mark functions as "unused" vtkChartBox: initialize segmentIndex nit: remove extra semicolon vtkMPI: install so that vtk_mpi_link is available python: install packages properly opengl2: use STATUS for the OSMesa message Maintenance: recognize the KIT keyword in scripts module: add comment to update maintenance scripts too Maintenance: recognize language exclusion keywords warnings: fix narrowing warnings TestSurfacePlot: loop using vtkIdType vtkQuaternionInterpolator: call the constructor properly warnings: remember values with the proper type warnings: use static casts to point out precision loss warnings: use floating point intermediate values warnings: resolve unused variables vtkOpenGLImageMapper: fix unintentional shadowing warnings: fix signed/unsigned comparison warnings vtkOpenGLProperty: remove unused function unused: use the vtkNotUsed macro Q4VTKWidgetPlugin: only define qDebug if not already defined mpi4py: use the output, not the result cmake: remove unnecessary condition copies vtkSmartPyObject: ignore warning C4127 on MSVC mpi4py: use old code with Python 2.6 as well Berk Geveci (52): Removed priority based streaming and fast path. Removed unused code from vtkModelMetaData and vtkExodusModel COMP: Fixed compiler error - needed to remove functions from .h. Improved test to increase vtkDistributedDataFilter's coverage. Cleaned up the Exodus metadata. Fixed minor typo - case sensitivity issue. Removed verts from streaklines - lines are enough. Removed unnecessary recursion in pipeline streaming. Filter was modifying self in request. Fixed. Fixed minor typo in documentation. Added test for vtkTableBasedClipDataSet. Added caching to temporal interpolator. Fixed minor bug in the ensight gold reader. Added EnSight tests to increase coverage. Added initial ghost points support to vtkDataSetSurfaceFilter. PERF: Parallel streamline was slow. Fixed. Refactored how pieces and extents are handled. Update the XML readers and writers to work with pipeline changes. Cleaned up and fixed transmit filters for structured data. Fixed bug in send structured data. Fixed legacy parallel reader and writer. BUG: Was using array of wrong size. Fixed compiler warnings. Changed synchronized templates class for new pipeline behavior. Removed unused keys. Updated filters and sources to work with new pipeline logic. Moved key. Cleaned up extent translators. Removed unnecessary reference to extent translator ExtractSelection was not managing pieces corretly. Fixed. Filters should silently handle empty input Fixed multiple issues with resample/probe filters. Fixed contour filters Fixed issues in the group filter. Fixed crash in the empty input test. Fixed vtkXdmfReader for parallel structured data. Parallel Exodus writer was not asking for pieces. Fixed. Added new meta-data and request capability to the pipeline. PERF: Removed unnecessary function call. Added an ensemble source. Added documentation and testing to vtkPythonAlgorithm. Fixed no newline at end of file warnings. Executive was setting update extent initialized falsely. PERF: Removed unnecessary garbage collection. Fixed indentation and style to match VTK's. BUG: Filter was overwriting input scalars. Fixed. Added modules that create a numpy type interface. Certain MPI types were not being recognized by mpi4py. Improved TestNumpyInterface to cover various append implementations. Added sum and mean per block to Python algorithms. Added support for CompositeDataSet.Points. Fixed innaccurate comments. Bill Lorensen (26): COMP: Test driver array bounds error BUG0013829: vtkAssembly::GetBounds adds bounds which are uninitialized BUG0014331: Filter skips VTK_CUBIC_LINE COMP: Restore TestTessellator test ENH: Added tests that were removed during modularization COMP: Refactored TestDataObjectIO COMP: test require NO_VALID modifier ENH: Add removed tests COMP: Improve coverage of vtkMeshQuality COMP: Missing NO_VALID ENH: Improve code coverage script BUG: Flawed logic for NO_OUTPUT COMP: Python unittest requies NO_OUTPUT COMP: Performance warning: int to bool COMP: Remove QtInitialization from otherPrint test ENH: Remove ThirdParty code from coverage results COMP: Remove bogus line info from generated files ENH: Unit test for ParametricSpline ENH: Coverage for MultiThreshold. BUG: CreateDefaultLookupTable crashes if Input is NULL. ENH: Add some more coverage for MultiThreshold ENH: Improve code coverage for UnicodeStringArray ENH: Unit test for vtkMath COMP: Adjust tolerances COMP: Guard against infinite loop in vtkClearOpenGLErrors ENH: Provide PlaybackFile for recorded interaction events Brad King (35): COMP: Drop invalid custom commands from HDF5 COMP: Drop missing dependencies of target 'vtkpython_pyc' vtkhdf5: Remove extra calls to cmake_minimum_required Accelerators/Dax: Remove extra call to cmake_minimum_required Refactor top-level CMake Policy settings as loop Examples: Set required CMake version and policies before project() Set CMake Policies CMP0025 and CMP0042 as necessary Rendering/Volume: Convert new baseline to ExternalData content link Wrapping/Tcl: Fix CMake Policy CMP0050 warnings IO/XML: Remove unnecessary <sstream> include IO/XML: Add missing <string> include IO/XML: Fix HeaderTest for this module vtkOStreamWrapper: Support std::string Revert "vtkOStreamWrapper: Support std::string" vtkOStreamWrapper: Support std::string Revert "vtkOStreamWrapper: Support std::string" vtkOStreamWrapper: Support std::string Allow custom TestTM3DLightComponents timeout Allow custom TestProp3DFollower timeout Honor VTK_INSTALL_NO_DEVELOPMENT for archive libraries Use vtkMPI.cmake helper for all module MPI tests Set MACOSX_RPATH property default consistently across CMake versions ExternalData: Add backtrace to missing file warning Export the locations of Qt5 packages on which modules depend Allow configuration of external module dependency locations Views/Infovis: Add another baseline for TestConeLayoutStrategy Allow custom Interaction/Widgets test timeouts Fix ExternalData pre-commit hook on msysGit Add option to exclude VTKData target from default build mpi4py: Suppress warnings in third-party code vtkFFMPEGWriter: Fix build with libavcodec55 Exclude classes requiring a QApplication from VTK smoke tests module: fix export macros with kits vtkglew: Install glew header files IO/ADIOS: Exclude module from VTK_BUILD_ALL_MODULES Burlen Loring (1): surface LIC - stl and NULL Chris Harris (22): Add failure filter to session.auth(...) deferred Add error function to vtk:mouseInteraction RPC vtkWeb: Add newline to end of each proxy map entry vtkWeb: Teach launcher.py to wait for ready_line vtkWeb: Add appropriate error codes for launch requests vtkWeb: Don't reset viewer to null on updateViewer(...) vtkWeb: Propagate mouse events to VGL vtkWeb: Fix calls to old VGL API vtkWeb: Rename ogs.vgl => vgl Rename md5 => sceneMD5 to avoid confusion Update canvas size before creating viewer Prevent mouse event handlers be bound multiple times Update VGL to master Update version of VGL Prevent scene and clipping range from being reset Update VGL to lastest version vtkWeb: Refactor fetchObject(..) to use cached objects Add code to clean of VGL actor cache Add missing initialization of member Fix typo introduce by 06aaa805 session => m_session Update to modern CMake style Allow location of OSMesa install to be specified Chuck Atkins (1): Initial ADIOS readers and writers Cory Quammen (7): BUG: Fix build failure in RenderingParallelLIC on Intel compiler Added "sticky" axes mode to vtkCubeAxesActor Fixed linkage problem in Windows Improved comment handling KW00001404: Major overhaul of vtkAppendFilter Fixed memory leak and improper erasing of std::set elements Fixed error in appending cell data Dan Lipsa (9): Report an error when writing a file with changing topology. Update documentation. Remove debugging printouts. Name enum LEFT, BOTTOM, ... Location. Add component-wise set functions for Border and Gutter (vtkChartMatrix) Set Bold and Italic axis label properties for ScatterPlotMatrix. vtkMultiProcessStream: Add insert and extract operators for bool Fix Windows compilation warning. Forces the compiler to convert a char* to a string rather than a bool. Dave DeMarle (35): Increment version to VTK 6.2.0 Add a test for the VPIC reader document arguments to test macros move dashboard management scripts into better place fix link errors that happened when I turned on InfovisParallel deprecate this module fix a compilation warning make rubber band look correct on scenes with textures optimize geojson writer more optimization of geojson writer fix variety of dashboard problems Put libxdmf into a namespace so that libxdmf3 can coincide with it. Adapt libxdmf to build within VTK. add cmakescript infrastructure to make libxdmf a VTK module Add a reader and writer for the new xdmf library. Fixes for xdmf3 regression test data. Fix issues the dashboards turned up. Fix more issues the dashboards turned up. Really fix on of the issues the dashboards turned up Fix a regression in the xdmf bump STYLE: improve comments and organize internal classes fix a case of discarded arrays Remove stray debugf. bring back subsets put array reuse in Fix dashboard warnings and test failure. disable a balky test until we can fix it Add file series reading and top level spatial partitioning fill in time varying graphs STYLE: pull helpers out and format all for vtkstyle move strict partition multipiece constuction out to reader level disable oggtheora on cray too Fix problems that the dashboards turned up. remove MetaIO to replace with updated content exclude matlab from the "all" modules set David C. Lonie (14): Tie vtkUnstructuredGridBase into the dataset type system. Update baseline Handle empty array initialization in numpy_support. Don't reset traversal location in each iteration of box clip filter. Process facestream in vtkExtractUnstructuredGridPiece::RequestData. Handle polyhedra in vtkUnstructuredGridWriter. Disable FP frame buffer when GL_ARG_texture_float is not present. Return early if ProjectedTetrahedra volume rendering is unsupported. Add new baseline for rendering without floating point buffers. Add new baseline for dashlin1. Pass std::strings through the OStreamWrapper. Revert "Pass std::strings through the OStreamWrapper." Return early in TransformPoints if input is NULL. Update system font test baseline. David Cole (6): Add a vtkMath method to compute the angle between two vectors Tests: Re-activate the old TestResliceCursorWidget tests Tests: Add test for the vtkCornerAnnotation class - Follow on commit to use the right style #include ("", not <>) BUG: Add missing header files to enable try_run tests to run without crashing Testing: Call SetMultiSamples(0) from tests David Gobbi (19): 14196: Allow unicode path in vtkLoadPythonTkWidgets.py. In wrappers, guard against #including dirs. Fix cell picker for images with negative spacing. Fix uninitialized array warnings. Fix unreachable code warning in otherCellTypes.cxx. Fix a crash when deleting vtk-python objects. Fix bad SetColor/GetColor interaction in vtkProperty. Fix the extent for tiled tiff files. Two fixes for certain lsm (zeiss) tiff images. Add reader/writer for NIFTIv1 and NIFTIv2 files. Add SetSlabModeToSum() to vtkImageResliceMapper. Clean up vtkMedicalImageProperties PrintSelf. NIFTI makes IOImage module depend on vtkzlib. Fix warning about trailing comma in enum list. Bad null pointer check in vtkBSplineTransform. Fix segfault if vtkImageWeightedSum's inputs don't match. Rewrite the comments for vtkDataArray::GetRange. Add generic PyObject support to vtkPythonOverload. Provide a method to set the sample spacing for slab modes. David Stoup (1): Add multi-layer support to the vgl interface. David Thompson (6): Bug 14713: Read LS-Dyna point coordinates properly. Add a regression test for bug 14713. Small fixes to docs, comments, and formatting. Add support for reading polyhedra. Test reading a polyhedral Exodus dataset. Add test data with multiple polyhedra. Eli Kahn (4): Adding mousewheel support to Java GUI components. Fix java code formatting. Add java file to generated jar file. In java code, handle situation when wheel rotation value is zero. Georg Hammerl (1): Add caching for time steps in EnSightGoldReader binary reader. George Zagaris (18): Disable I/O in TestStructuredAMRGridConnectivity ENH: DuplicateNodes property to RCB partitioners BUGFIX: Fix integer overflow in vtkStructuredData ENH: FieldData deserialization to a subextent ENH: Add blanking to vtkXMLUniformGridAMRReader ENH: Implicit structured data connectivity COMP: Update vtkFiltersParallelMPI tests ENH: Rename nodes to points in vtkStructuredData BUGFIX: Add guards for NULL ivars in PrintSelf BUGFIX: Fix issue with unigrid enzo datasets COMP: Correct ParallelMPI module test dependencies COMP: Remove HyperTreeGridGeometry::UpdateExtent() ENH: Update extract structured data filters ENH: Use vtkImageData in implicit connectivity ENH: RectilinearGrid implicit connectivity support ENH: MPI structured data extraction filters COMP: Fix a few compiler warnings ENH: Added broadcast implementation for RMI triggers Jacob Becker (1): Fix bad check for incomplete polygons, fix div-by-zero. Jameson Merkow (1): Add files, and made modifications for MatlabMex to wotk in vtk 6 Jean-Christophe Fillion-Robin (3): vtkPythonCommand - Add support for additional call data types vtkPythonCommand - Fix indent and variable names Configure VTKConfigVersion consistent with VTK's compatibility guarantees Jeffrey Baumes (1): Fixing array bounds issue Joachim Pouderoux (19): Introduce Robust PCA. Introduce box plot and the corresponding chart. Introduce Compute Quartiles filter to generate box plots tables. Enhance bag plot API to allow specify line and points properties. Fix bag plot legends. Fix black box plots issue. Fix double to unsigned char cast error on clang compiler. Fix bag plot and functional bag plots tests. Fix and enhance the box plot and chart Fix and enhance bag plots. Fix bug in picking of invisible props in an assembly. Clean an enhance hypertree grids. Fix potential compiler error with ternary operator. Replace a verbose cout by a vtkDebugMacro() Fix clang errors on array initialization Fix and clean vtkWin32OpenGLRenderWindow class. Fix functional bag plot. Clean and uniformize vtkPoints & vtkPoints2D. Fix crash on normal computation when polygon is empty. John Stark (2): Add a test for vtkImageImport / vtkImageExport Fix pipeline update issues in vtkImageExport Jorge Perez (1): Upgrading the Tcl examples wrt. VTK 6.x Julien Finet (4): Prevent error message when deep copying vtkGridTransform Change GetInputConnection error message into a debug warning message Enable GPU Raycast volume mapper for recent NVIDIA drivers on Mac OS X GPU raycast volume rendering now supports textures larger than 1024 Julien Jomier (2): ENH: Fixes for ActiViz.Net BUG: Wrong transformation used to restore original parameters KWSys Robot (1): KWSys 2014-03-12 (dd873734) Ken Martin (115): some rough changes to the VBO polydata mapper some more cleanup added light override compute cam matrix, add posiitonal light in progress updates to support positional lights change how object factory is done some fixes to normals etc added ambient color in some module changes override actor change bunny color changes in normal calcs moved property over and started gutting it fix normals on test minor changes some bug fixes and start on mapper2D allow testing using old mapper bug fix added cxx for Helper duh many updates to 2d mapper bug fix lots of rough changes moved renderer over, moved init code in progress in progress cell scalars some cleanup and fixes lots of changes in progress more fixes fix array bounds issue and memory leak fix performance issue add fast path for float points no col no norm and fix bug started on texture mapping first cut a tmap support add textured backgrounds and fix issue with gradients bug fixes clean up a bit change opacity clean some texture stuff minor fixes fix crash on test fix crash on test add fragment shader lighting of lines support textured luts some cleanup some support for resolving coincident polys ambient color fix some minor fixes start working on image slice mapper add baseine images updated baseline images updated baseline image minor backwards compatability change basic ImageSliceMapper conversion some more fixes moved render window over bug fix in old VTK bunch of optimization more to come bad optimizations and missing classes' doh forgot really key line bug fix and minor cleanup fix a glyph bug and minor cleanup another bug fix better picking support some cleanup move interface closer to old Rendering API convert ImageMapper some bug fixes another valid image, remove unused test fix SetPixelData and fix picking issue add depth peeling make wider so we can see errors some win32 fixes rename VBO mapper cleaned up the mapper a bit minor cleanup minor lighting fix for intel handle wireframe tstrips some bug fixes etc more fixes more fixes add support for edge visibility modify API to be a bit more future proof fix some picking issues some fixes for andriod some fixes for andriod remove some old code some fixes for andriod more andriod glew changes more andriod glew changes many changes to support glew and android many changes to support glew and android many changes to support glew and android first working in quotes android app first working in quotes android app comment out more modukles by default some warning fixes and minor cleanups fix some more warnings fix some more warnings make vtkOpenGLTexture use vtkTextureObject convert depth peeling to use more texture objects a tad more depth peeling cleanup add android output window better debugging out for shader programs clean up some shader code new android interactor and cleanup some shader cleanup some android fixes in progress improved release graphics resources improved release graphics resources minor change to be more compatible with some opengl hardware fix android resize and lingering glew issue added multitouch framework and support on windows and android fix java issue in progress in progress more reasonable first cut at java android clean up some shader code and classes removed unused includes fix some warnings Kenneth Moreland (2): Dax marching cubes now uses input array not active scalars. Allow Dax marching cubes and threshold to work with doubles. Lisandro Dalcin (1): import mpi4py 1.3 Marco Cecchetti (5): vtkColorString - Helper class for defining a color through a string. Merged vtkColorString into vtkNamedColors. I added a RGBAToHTMLColor and made some minor changes. Tentative fix for Windows build issue. Tentative fix for big-endian machine issue. Marcus D. Hanwell (98): Added a test for biquadratic quad interpolation Exclude the vtkgl.* files (generated code) from coverage Make consistent with vtkBiQuadraticQuad Added back the QtSQL test for the database class Removed misleading comment - test is built Added back various rendering tests Added back the named components test in FiltersCore Removed a few remaining Cg related files Refactored the TIFF reader, add support for floats Added progress updates when reading a volume Remove redundant checks for old JPEG compression Copy simple TIFF images into buffers more directly First pass at a new render widget Implement a basic VBO based poly data mapper Basic support for color from property Add the find module for Eigen 3 Added a hack to override OpenGL overrides with GL2 Roughly mapping the colors/scalars, updates to shaders Normalize the colors, and put the light the other side... Added the dragon model (already in external data store) Moved the VBO and IBO creation to helper functions Use the vtkPolyDataNormals filter to calculate normals Added a points/lines test, added point/line rendering Added in a program for lines, change Moved the replace function into the helper header Refactoring a little, movig IBO stuff into structs Added a polyline, and basic support for rendering it Refactor uniforms a little, enable point rendering again Small changes for point size and line width Minor clean up for includes in the mappers Ensure we set the active shaders Removed commented code/classes from the test Added in the case for multiple renders/VBO updates Refactor the shader API to comply with VTK style Refactor API, comply with VTK style Refactor the shader program API to comply with VTK style Added a Vertex Attribute Object (VAO) class Enable textures now that the vtkTexture class doesn't do it Set the z-spacing in a TIFF to match x-spacing Early attempt at getting the 3D glyph mapper working Hackish, map the colors for the glyphs Keep the color mapper around, shallow copy for settings Fixed the normal matrix, now molecules look much better Make it compile on Linux/X again Bring over the Cocoa classes for Mac Intel GLSL compiler is much fussier about type... Removed the vtkFiltersCore dep Removed vtkRenderingOpenGL as a dep now too! Made vtkRenderingOpenGL2 independent of vtkRenderingOpenGL The PainterDeviceAdaptor is abstract, can be NULL Rename vtkOpenGL2* -> vtkOpenGL* Very judicious use of sed, vtkOpenGL2* -> vtkOpenGL* Added a concept of backends, added OpenGL and OpenGL2 File moves necessary to create a context backend Context OpenGL and OpenGL2 backends Some minor tweaks to get the tests passing again Some modules only in groups if correct backend selected Missed these OpenGL2 variants with the mass rename Brought more of the OpenGL module logic over OpenGL and OpenGL2 are mutually exclusive If enabled, always override in OpenGL 2 Unused include for a file that was deleted Disable multitexturing in Geovis class Moving rendering tests to more appropriate places More test moves into more appropriate locations Removed the TDx classes from OpenGL 2 Only enable backends for interface modules being built Disable test for render widget Changed the default CDash URL for VTK Move several TEST_DEPENDS to switch on backend Create object factory CMake file, move vtk_add_override Now generate the object factory files in a function Revert "updated baseline images" Revert "updated baseline image" Some dependency updates now vtkRenderingContext2D is abstract Don't exclude the module from wrapping - initialization Made the label tests pass again! Make TCL wrapping happy - no numbers in module names Added include for std::string Save the rendering backend used to the config file Avoid early termination when collecting actors vtkOpenGLContextActor should subclass vtkContextActor One of the tests needs a context device to render Removed unused variable - used in subclasses These classes are abstract, fix smoke tests Fix for Windows mangling issue Must be marked WRAP_EXCLUDE too for Tcl smoke tests Reduce the number of renders (avoid time outs) Move device adapter initialization to the OpenGL module BUG: Make selections more permanent, linked to object STYLE: Some basic style fixes Removed sorts as the inputs were already sorted Added a test to exercise bar graph selection Remove the wrap exclusion at the module level More exclusions, avoid setting ABSTRACT twice TCL doesn't like numbers in module names Comment out the animated PDB renders CMake's exec_program is deprecated, revert back MetaIO developers (1): MetaIO 2014-07-09 (53aa417f) Nicole Aucoin (1): BUG: fix null pointer crash in view to world with no active camera Patrick O'Leary (1): added paraviewweb widget for catalyst workbench Paul Edwards (2): Fix for polyhedron cells. Bug fix for dataset surface filter. Robert Maynard (15): Update Dax Accelerator to use the new tll signature. Update the Dax Accelerator to use the new dispatcher classes. Correct warnings about negative unsigned constant values. Properly implement the factory for the dax filters. EnSight Binary uses 64bit longs so explicitly use those instead of long. Netcdf now handles different directories for c and cxx bindings. Improve the performance of vtkDataArray::ComputeScalarRange. Improve the performance of vtkDataArray::ComputeVectorRange. Move all free functions in vtkDataArray into an anonymous namespace. Update ComputeVectorRange based on gerrit feedback. Update DataArray and DataArrayTemplate to use vtkTypeTraits. Correct ComputeScalarRange when dealing with multiple components. Improve ComputeScalarRange when we have a single component. Correct an issue with converting dax data to vtk polydata. Refactor GetRange to compute all ranges at the same time. Sandeep Menon (1): vtkOBJReader: accept relative indices in OBJ files Sankhesh Jhaveri (12): BUG: Fix failing EnSightBlow5ASCII tests BUG: Turned multisampling OFF for certain tests failing on linux with ATI Fixed multisampling issues for some tests on ATI ENH: Script to generate API differences between two git revisions ENH: Added test for vtkImageCroppingRegionsWidget to improve coverage ENH: Enable selection of translucent geometry BUG: VTK_JAVA_SOURCE_VERSION to accomodate different java versions Re-enabling tests disabled during modularization for Interaction/Widgets BUG: Duplicate class definition in TestSeedWidget2 BUG: Duplicate class definition of vtkSeedCallback2 Additional baseline for TestAreaSelections BUG: Border visibility from underlying vtkScalarBar actor Scott Wittenburg (9): Added code to draw current selection rectangle in viewport. Added code to support a cache option for filebrowser widget. Added canvas based image zooming and panning capabilities. Fixed a null reference by surrounding the call with a check. Support faster configuration times by checking dependencies at runtime. Changed to make tests run serially, async nature was causing collisions. Replace an import which disappeared and broke all dashboard web tests. Updating to Autobahn python version 0.8.13 to get http long poll endpoints. Added latest Autobahn JS (0.9.4) to support pvweb authentication. Sean McBride (47): bug #14418: Remove addition of "-Wno-deprecated" compiler flag Fix clang analyzer warning about passing null to strcmp Fixed clang analyzer warning about passing null to memcpy Fixed clang analyzer warning about reading uninitialized memory Fixed clang analyzer waring about a dead store. Fixed clang analyzer warning about dead store Fixed clang analyzer warning about dead store. Fixed clang analyzer warning about dead store. Fixed clang analyzer warning about dead store. Fixed clang analyzer warning about dead store. Fixed clang analyzer warning about 2 dead stores. Fixed clang analyzer warning about dead store. Fixed clang analyzer warning about reading past an array. Fixed several clang analyzer warnings. Fixed clang analyzer warning about reading uninitialized memory. Fixed clang analyzer warning about dead store to 'pd'. Fixed clang analyzer warning about passing null to memcpy. Fixed clang analyzer warning about dead store to 'index'. Fixed clang analyzer warning about dead store to 'bestTime'. Workaround clang analyzer warning by creating temp variable. Fixed clang analyzer warnings about dead stores. Misc cleanup of code nearby clang analyzer warnings. Fixed clang analyzer warnings about dead stores. Fixed clang analyzer warning about dead store at very end of method. Fixed clang analyzer warning about dead store to 'itr'. Fixed clang analyzer warning about dead store to 'cptr'. Fixed null deref found by clang analyzer Fixed clang analyzer warnings about dereferences Suppress clang analyzer warning Fixed clang analyzer warning about null deref Fixed clang analyzer warning about reading uninitialized data. Fixed infinite recursion in vtkBitArray::RemoveFirstTuple() Improved code coverage of vtkScalarsToColors by adding more tests Added tests for a few uncovered vtkMatrix3x3 methods Fixed error in vtkFiltersCoreCxx-TestClipPolyData test Removed -fobjc-gc from VTK_REQUIRED_OBJCXX_FLAGS Various Cocoa improvements and fixes Fixed a bunch of clang -Wabsolute-value warnings Removed all uses of deprecated NSOpenGLPFACompliant Assume UTF8 for vtkCarbonRenderWindow::SetWindowName Remove unnessary 'if' before 'delete[]' Add #error when trying to build as Cocoa ARC Fixed confusing indentation, no behaviour change Fixed unused variable warning in release Rewrote vtkCoreGraphicsGPUInfoList to not use deprecated API Removed checks for antique Borland versions Changed public API of vtkGPUInfo to return vtkTypeUInt64 for memory sizes. Sebastien Jourdain (55): Add catalyst web widget into VTK Add NaN support in web chart rendering Add a resampling filter Add JSON writer for ImageData Extend vtkImageMapToColors to support Mask color and Non Active Scalar input Use / for path separator to prevent Windows related issue with escape char Improve implementation of Catalyst viewer Add image resampler catalyst web widget Remove test dependency to data when not needed Remove usage of the keyword with to allow old python Add new set of catalyst web widgets Attempt to handle some system raise condition Add catalyst web composite widget Better composite catalyst web widget better UI for catalyst re-sampler web widget Various VTK-web improvement Fix vtkweb catalyst css Add cost information in workbench analysis Improve web compositing for dynamic interaction Properly handle background selector visibility Fix composite rendering widget for search Add sorting capabilities Refresh workbench UI and workflow Fix Composite Javascript for WebKit Improve ParaView cinema UI Improve basic search in web-catalyst Fix catalyst web - cost time computation Improve catalyst web UI Catalyst web: Minor Web UI change Catalyst-web: Improve composite search experience Add image width column Add cost estimate for Catalyst Web Catalyst-Web estimate UI fix Change catalyst-web analysis API to expect full URL Fix center of rotation for WebGL renderer Fix WebGL background orientation Fix basic catalyst viewer with theta Add runtime libraries on Windows for Java binary package Fix several catalyst web UI issue Add configuration pass to Catalyst PVW workflow Add support for mobile device interaction Catalyst Web - Composite improvement Catalyst web Add new rendering class API based on vtkPanel class Remove @Override annotation to prevent compilation issue on old Java compiler Upgrade autobahn version to 0.8.9 Upgrade Twisted version to 14.0.0 Upgrade ZopeInterface version to 4.1.1 Add SixPython module for Autobahn dependency Update Autobahn/JS library version Update VTK Web Python code to handle WAMP v2 Update Web applications to support new protocol API Fix python for vtkweb Allow arbitrary WebSocket endpoint Add bottstrap3 + pv lib in loader Shawn Waldon (2): Add a smartpointer for PyObjects Format comments according to VTK stlye guide Shinya Onogi (1): fix_GPU_resource_handling Thomas Vaughan (1): Set origin and spacing in vtkSurfaceReconstructionFilter. Ref: Mantis 0002826. Tristan Coulange (5): BUG: fix some xdmf writer crashes BUG: Add a missing include for VS 2013 Add support for original ids for generic dataset BUG: fix xdmf test failure BUG: Fix the quads evaluate location Utkarsh Ayachit (31): Adding a new test for TestSocketCommunicator. Added test to test vtkSynchronizedRenderers. Deprecate vtkOpenGLPolyDataMapper. Fix segfault with TestSetGet. Fix build issues with deprecated vtkOpenGLPolyDataMapper. Add a delay between process launches. Fixed mismatches cell arrays in vtkPStreamTracer. Added ability to probe filter to allow disabling of passing field data. Add support for empty strinngs in SetInputArrayToProcess. Make it possible to override ClampPos. Remove OpenGL error checks that were causing errors. BUG #14244: Fix stereo image captures. Add helper method to convert from SelectionField to AttributeType. Fix appending of scalar arrays. Fix DataSet reference in when input array is passed to output. Avoid exceptions on StringArrays. Fixed exceptions with older numpy version. Cleanup MPI controller properly. vtkExtractSelectedRows only works with IdTypeArray. BUG #14828: Keep surface color from interacting with scalar color. Handle append scalar in CompositeDataSetAttributes. BUG: Fixed opacity mapping when scalar array is vtkUnsignedChar. BUG #14813: Fix range reported for mode shapes. BUG #14599: Handle double values properly. Fix issue with empty arrays with numpy 1.2.1. Don't glyph masked points in vtkUniformGrid. BUG: Fix invalid return value check in vtkClientSocket. vtkScalarBarRepresentation doesn't call Superclass. Fixed logic to work when an empty vtkSelection is passed. Fix handling of empty selection on ParallelCoordinates. Fixed issue with selection frame line style. Will Schroeder (7): Disabling translation and scaling now works. Added the ability to specify a clip tolerance. Fixed bug causing plane to disappear on boundary. InsertNextCell and related method now return the proper vtkIdType. Create vtkPolyData instead of vtkUnstructuredGrid when passing points. Extended filter to support culling unused points. Added ability to control alpha shape output XDMF Developers (3): export xdmf for import into vtk export xdmf for import into vtk export xdmf for import into vtk Xabi Riobe (1): BUG: The method vtkClipPlanesPainter::UpdateBounds must not be implemented. Zack Galbreath (25): fix lingering off-by-one error new writer: vtkPhyloXMLTreeWriter attempt to silence "possible loss of data" warning improve the thoroughness of TestPhyloXMLTreeWriter add baseline directory get the baseline file's path from the command line add option to write XML to string instead of file fix failing tests revealed by gerrit fix the format of PhyloXML references fix blank newline in XML output vtkXMLReader can now read from an input string new class: vtkPhyloXMLTreeReader consolidate tests for PhyloXML silence unused parameter warning change signatures for wrapping copy row names from R to vtkTable do not assume 1st column holds row names fix failing SetGet test forvtkHeatmapItem preserve R data.frame row names break vtkRCalculatorFilter's input/output symmetry style cleanup add SSL support to VTKWeb server fix potential segmentation fault change the way we shut down the R interface fix failing R tests reported by CDash xabi riobe (4): Fix memory leak in vtkPNGWriter when OutOfDiskSpaceError Initialize row_pointers Fix numerical precision problem in vtkCellLocator::IntersectWithLine Add default value for argument git-svn-id: http://svn.slicer.org/Slicer4/trunk@23622 3bd1e089-480b-0410-8dfb-8563597acbee |
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master d6e7e66d 2014-08-26 19:41:17 Details Diff |
COMP: Remove 10.9 from the list of version to consider. Issue 0003809 See inlined comment for more details. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23621 3bd1e089-480b-0410-8dfb-8563597acbee |
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master cb222ffc 2014-08-26 19:41:15 Details Diff |
COMP: Remove redundant code from SlicerMacroPythonWrapModuleVTKLibrary This commit de-duplicate code originally added to both "vtkMacroKitPythonWrap.cmake" and "SlicerMacroPythonWrapModuleVTKLibrary" in r23121. The code in vtkMacroKitPythonWrap is sufficient. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23620 3bd1e089-480b-0410-8dfb-8563597acbee |
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master 6423c42c 2014-08-26 19:41:12 Details Diff |
COMP: Link against vtkWrappingPythonCore to use vtkPythonUtil fucntions git-svn-id: http://svn.slicer.org/Slicer4/trunk@23619 3bd1e089-480b-0410-8dfb-8563597acbee |
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master 52c3ad8d 2014-08-24 20:40:14 Details Diff |
BUG: Made color scalar bar RepositionableOff This is a quick temporary fix for color scalar bar re-positioning behavior which not works in horizontal mode. For more details, see http://slicer-devel.65872.n3.nabble.com/Slice-annotations-comments-tp4032290p4032305.html From: Alireza Mehrtash <mehrtash@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23618 3bd1e089-480b-0410-8dfb-8563597acbee |
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