Changesets: Import 2017-06-07 23:51:09
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master f278821c 2015-03-10 17:44:07 Details Diff |
BUG: Do not expect log file to exist to try to append text for the first time This commit fixes a regression introduced in r24051 (ENH: Add convenience function to append text to current log file.) git-svn-id: http://svn.slicer.org/Slicer4/trunk@24054 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/qSlicerApplication.cxx | Diff File | ||
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master 16260ced 2015-03-10 17:30:42 Details Diff |
STYLE: Fix help message layout removing logging of application name This commit removes the debug message added in r24004 (ENH: Allow application name to be defined by argv0) Prior to this commit, the name of the application was displayed between the launcher help message and the application one: 8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<--- [...] --xterm Start xterm --gdb Start gdb applicationName: "Slicer" --, --ignore-rest Ignores the rest of the labeled arguments following this flag. (default: false) -h, --help Display available command line arguments [...] 8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<--- git-svn-id: http://svn.slicer.org/Slicer4/trunk@24053 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/Main.cxx | Diff File | ||
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master eedd2811 2015-03-10 17:30:41 Details Diff |
ENH: Append module loading stats to log file. git-svn-id: http://svn.slicer.org/Slicer4/trunk@24052 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/qSlicerApplication.cxx | Diff File | ||
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master 89f4b4de 2015-03-10 17:30:27 Details Diff |
ENH: Add convenience function to append text to current log file. git-svn-id: http://svn.slicer.org/Slicer4/trunk@24051 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/qSlicerApplication.cxx | Diff File | ||
| mod - Base/QTGUI/qSlicerApplication.h | Diff File | ||
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master 9a5cbf17 2015-03-10 17:30:25 Details Diff |
ENH: Display module loading stats only if verbose module discovery is set. git-svn-id: http://svn.slicer.org/Slicer4/trunk@24050 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/Main.cxx | Diff File | ||
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master 014dc19e 2015-03-10 14:18:25 Details Diff |
STYLE: Fix typo in comment git-svn-id: http://svn.slicer.org/Slicer4/trunk@24049 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTGUI/qSlicerModulePanel.cxx | Diff File | ||
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master 0be60664 2015-03-10 13:10:49 Details Diff |
ENH: Update VTK to v6.2.0 $ git shortlog d733280..v6.2.0 --no-merges Aashish Chaudhary (6): Do not assume initial min and max values Attempt to fix failing independent component tests GLSL 120 does not support sampler arrays Added missing header Fixed errors found using valgrind leak check Silenced compiler warnings Andrew Bauer (1): Getting rid of compiler warnings. Andrew Maclean (2): Visual Studio 2013 requires the <algorithm> header. Remove the unnecessary find_package command. Arnaud Gelas (1): Limiting number of ModifiedEvent when calling vtkTransform::SetMatrix Ben Boeckel (19): IOXdmf3: remove excess MPI stuff install: install missing module-related files netcdf: support a system netcdf cmake: reformat java compilation commands java: add an option to set the target for java compiles wxVTKRenderWindow: support wxPython 3.0 wrapping: find superclasses that are templates examples: add shebang lines doxygen: remove obsolete options doxygen: add an option to disable CHM files release: add scripts for release maintenance python: don't export Python modules as targets maint: use "git checkout" rather than reset maint: ignore css files for ctags as well metaio: remove stray reject file vtkModuleTop: handle UsrMove-like setups vtkWrap: use size_t for sizes vtkPistonMapper: fix a overload-virtual warning vtkWrapTcl: hide dString when there are no methods Dan Lipsa (1): BUG: Fix mispelled excluded class and print out all exclusions. Dave DeMarle (2): per bug 14586 fix external vtkLocal allow examples to be built without tests David C. Lonie (4): Fix an error in setting an array length. Fix conic point identification in the path renderer. Fix warning in vtkLabeledContourMapper.cxx Allow the initial GL2PS buffer size to be set. David Gobbi (1): Fix arg conversion of const ref arg via constructor. Jean-Christophe Fillion-Robin (4): vtkRenderer: Fix null pointer crash in ViewToWorld() with no active camera vtkhdf5: Fix build error when building on system with glic >= 2.19 per bug 14826 make find_package vtk more lenient vtkCornerAnnotation: Add convenience TextPosition enum John Tourtellott (6): Set geo-origin and -spacing in RequestInformation() call Add vtkGDAL class & MAP_PROJECTION key for pipeline data and field data Change missing geotransform from error to warning. Fix ctest errors Turn off wrapping for vtkGDAL.h Declare vtkGDAL constructor & destructor private, since class is static Ken Martin (6): Some updates to the timing test Fix molecular rendering in parallel projection Fix an issue with mapper requiring a polydata input Update to a cleaner way of solving the issue Fix a couple issues A fix for shader link error reporting an molecules with lightkit Sean McBride (1): Remove the addition of a few inappropriate vtkErrorMacro Shawn Waldon (3): Add an option to set default radius of point gaussian Fix triangle size for sprites with radius > 1 Made Point Gaussian mapper handle scale arrays not in dataset Sujin Philip (4): VTK SMP implementation of SynchronizedTemplates3D Fix SMP compile warning in VC++ Use the correct TBB lib based on the build config Fix for SMP examples compile issues Tim Thirion (2): Update Android toolchain file (now support NDKs r5 through r10d) Add one-pass Android build acbauer (1): Fixing issue of wrong celldata output order from vtkGeometryFilter. git-svn-id: http://svn.slicer.org/Slicer4/trunk@24048 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_VTKv6.cmake | Diff File | ||
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master c68ee668 2015-03-10 11:50:52 Details Diff |
ENH: Add scene static method to set storable nodes modified since read Add a convenience function that takes a collection of nodes and call it from the function that creates the collection of storable nodes. Issue 0003698 Inspired-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com> From: Nicole Aucoin <nicole@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24047 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLScene.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLScene.h | Diff File | ||
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master 4c39e0c6 2015-03-10 11:50:50 Details Diff |
BUG: Set scene to MRB directory instead of temp When loading an MRB the MRML scene url was left pointing to the deleted temporary directory. This change resets the URL to point to a mrml file in the same location as the MRB so that on subsequent saves the default location is correct. Since the temporary directory is deleted after loading, mark all the storable nodes as modified since read so that they will be properly flagged in the save data dialog for writing. Support relative paths for loading MRBs (the unzip call needs an absolute path). Issue 0003698 From: Nicole Aucoin <nicole@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24046 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Base/QTCore/qSlicerSceneBundleReader.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLScene.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLScene.h | Diff File | ||
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master 64790658 2015-03-10 10:43:47 Details Diff |
BUG: Fix py_nomainwindow_qSlicerDICOMModuleGenericTest Fix the failing test ensuring "qt loadable modules" are also discovered when executing generic scripted module tests. Inspired-by: Nicole Aucoin <nicole@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@24045 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMake/SlicerMacroBuildScriptedModule.cmake | Diff File | ||
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master 17012a1a 2015-03-10 01:20:47 Details Diff |
BUG: Update EMSegment to fix "EMSeg_MRML_DiffReadWriteNodes" test // ----------------- r17095 | jcfr | 2015-03-10 00:46:54 -0400 (Tue, 10 Mar 2015) | 3 lines BUG: Fix EMSeg_MRML_DiffReadWriteNodes test Add missing attribute 'placeModePersistence' into mrml scene used for the Tutorial tests // ----------------- git-svn-id: http://svn.slicer.org/Slicer4/trunk@24044 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master 4fb432e6 2015-03-09 23:52:04 Details Diff |
BUG: Update CTK to include fix for VTK log message parsing regexp $ git shortlog 6983ecc..a358caf --no-merges Andras Lasso (1): Fixed VTK log message parsing regexp git-svn-id: http://svn.slicer.org/Slicer4/trunk@24043 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_CTK.cmake | Diff File | ||
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master afea6b9b 2015-03-09 23:40:06 Details Diff |
STYLE: Add inclusion to guard to vtkAddon.h git-svn-id: http://svn.slicer.org/Slicer4/trunk@24042 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/vtkAddon/vtkAddon.h | Diff File | ||
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master 61a1a9b0 2015-03-09 23:27:02 Details Diff |
COMP: Added missing file to source control git-svn-id: http://svn.slicer.org/Slicer4/trunk@24041 3bd1e089-480b-0410-8dfb-8563597acbee |
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| add - Libs/vtkAddon/vtkAddon.h | Diff File | ||
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master 49f9958e 2015-03-09 22:46:17 Details Diff |
BUG: Remove obsolete NeurosurgicalPlanningTutorial QtTesting based test QtTesting XML tests are hard to maintain. Considering tutorial tests are now all written in python as SelfTest, this commit removes the last QtTesting tests. For example, in the case of the NeurosurgicalPlanningTutorial test, the play back is failing because the tree indices first recorded are now invalid. Most likely because the associated widget has been updated. Considering that (1) the XML is hard to manually update and debug and (2) is is difficult to re-record only a section of the test starting from the expected state, it would usually require the developer to re-record the full test. This is time consuming and sub-optimal. With better instrumentation or by using the QtTesting python based test (instead of the XML), it may be worth reconsidering. Also remove DiffusionTensorImagingTutorial related files (the associated test has been disabled in r22388) git-svn-id: http://svn.slicer.org/Slicer4/trunk@24040 3bd1e089-480b-0410-8dfb-8563597acbee |
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| rm - Applications/SlicerApp/Data/Input/NeurosurgicalPlanningTutorial.xml | Diff File | ||
| mod - Applications/SlicerApp/Testing/Python/CMakeLists.txt | Diff File | ||
| rm - Applications/SlicerApp/Testing/Python/DiffusionTensorImagingTutorial.py | Diff File | ||
| rm - Applications/SlicerApp/Testing/Python/NeurosurgicalPlanningTutorial.py | Diff File | ||
| rm - Applications/SlicerApp/Testing/Python/slicerappdatapaths.py.in | Diff File | ||
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master 6871f58b 2015-03-09 22:30:03 Details Diff |
ENH: Added vtkInfoMacro Added in a new vtkAddon library, which contains Slicer's VTK add-ons that eventually could be moved to VTK proper. Resolves https://github.com/Slicer/Slicer/pull/205 git-svn-id: http://svn.slicer.org/Slicer4/trunk@24039 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/Resources/UI/qSlicerAppErrorReportDialog.ui | Diff File | ||
| mod - Base/QTGUI/qSlicerApplication.cxx | Diff File | ||
| mod - Base/QTGUI/qSlicerModulePanel.cxx | Diff File | ||
| mod - Libs/CMakeLists.txt | Diff File | ||
| mod - Libs/MRML/Core/CMakeLists.txt | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx | Diff File | ||
| add - Libs/vtkAddon/CMakeLists.txt | Diff File | ||
| add - Libs/vtkAddon/Testing/CMakeLists.txt | Diff File | ||
| add - Libs/vtkAddon/Testing/vtkLoggingMacrosTest1.cxx | Diff File | ||
| add - Libs/vtkAddon/vtkAddonConfig.cmake.in | Diff File | ||
| add - Libs/vtkAddon/vtkAddonConfigure.h.in | Diff File | ||
| add - Libs/vtkAddon/vtkAddonWin32Header.h | Diff File | ||
| add - Libs/vtkAddon/vtkLoggingMacros.h | Diff File | ||
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master 36eaeaff 2015-03-09 13:27:59 Details Diff |
STYLE: Remove unused ivar from qMRMLLayoutManagerPrivate * GridLayout became obsolete following r15995 (ENH: Add support for layout XML descriptions.) * SavedCurrentViewArrangement became obsolete following r16046 (ENH: Move lastvalidlayout from qMRMLLayoutManager to vtkMRMLLayoutLogic) * TargetWidget became obsolete following r15129 (ENH: Separate MRML specific code of qSlicerLayoutManager into qMRMLLayoutWidget.) git-svn-id: http://svn.slicer.org/Slicer4/trunk@24038 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLLayoutManager_p.h | Diff File | ||
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master 9cb24a8c 2015-03-09 13:27:57 Details Diff |
STYLE: Remove unused methods from qMRMLLayoutManagerPrivate This commit removes code that became obsolete following r24017 (ENH: Add qMRMLLayoutViewFactory) git-svn-id: http://svn.slicer.org/Slicer4/trunk@24037 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLLayoutManager.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLLayoutManager_p.h | Diff File | ||
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master b61ed629 2015-03-09 13:27:56 Details Diff |
BUG: Fix qMRMLLayoutManager::viewWidget method This commit fixes a regression introduced by r24017 (ENH: Add qMRMLLayoutViewFactory) git-svn-id: http://svn.slicer.org/Slicer4/trunk@24036 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/Testing/qMRMLLayoutManagerTest1.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLLayoutManager.cxx | Diff File | ||
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master 10e6634f 2015-03-09 03:23:47 Details Diff |
BUG: Fixed crash on application exit Fixes failing atlas tests on the dashboard. The problem was that vtkMRMLModelDisplayableManager unregistered vtkMRMLSelection singleton node in the destructor that it did not register before (therefore causing crash due to double-delete later when the true owners of the object unregistered). git-svn-id: http://svn.slicer.org/Slicer4/trunk@24035 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkMRMLModelDisplayableManager.cxx | Diff File | ||
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master 185e35a2 2015-03-09 03:23:21 Details Diff |
COMP: Added back Q_ASSERT for catching errors during tests Use null-pointer check to prevent crash in release mode but added back Q_ASSERT to trigger a test error during test runs. Fixed typo. git-svn-id: http://svn.slicer.org/Slicer4/trunk@24034 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLROIWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLSceneModel.cxx | Diff File | ||
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master 35942a29 2015-03-08 23:24:18 Details Diff |
ENH: Added null pointer check With the check Slicer fails gracefully (logs the error and does not update the invalid scene model item) instead of crashing. git-svn-id: http://svn.slicer.org/Slicer4/trunk@24033 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLSceneModel.cxx | Diff File | ||
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master 266ccb8d 2015-03-08 23:00:01 Details Diff |
ENH: Use Start/EndModify instead of manually calling InvokePendingModifiedEvent Replaced obsolete DisabledModifiedEventOn/Off, InvokePendingModifiedEvent combination by Start/EndModify (it is simpler and works for nested Start/EndModify) git-svn-id: http://svn.slicer.org/Slicer4/trunk@24032 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkThreeDViewInteractorStyle.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLROIWidget.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLVolumeInfoWidget.cxx | Diff File | ||
| mod - Modules/Loadable/CropVolume/MRML/vtkMRMLCropVolumeParametersNode.cxx | Diff File | ||
| mod - Modules/Loadable/MultiVolumeRendering/MRML/vtkMRMLMultiVolumeRenderingDisplayNode.cxx | Diff File | ||
| mod - Modules/Loadable/TractographyInteractiveSeeding/Logic/vtkMRMLTractographyInteractiveSeedingNode.cxx | Diff File | ||
| mod - Modules/Loadable/VolumeRendering/MRML/vtkMRMLVolumeRenderingScenarioNode.cxx | Diff File | ||
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master b465887a 2015-03-08 13:18:12 Details Diff |
BUG: Fixed markup custom modification event notifications Fixes http://www.na-mic.org/Bug/view.php?id=3961 (markups RemoveAllItems not working properly) and many other update issues. Problem: StartModify/EndModify mechanism works well for Modified() event compression. Such mechanism is desirable for custom, more specific modified events, too (such as when markups are added, removed, modified). For example, the same mechanism was implemented for TransformModified and for MarkupAddedEvent, MarkupRemovedEvent, etc. Solution: To reduce code duplication and the chance of making mistakes (e.g., Markup modification event compression was implemented incorrectly), the mechanism is now available for custom modified events. Usage is very simple instead of calling vtkMRMLNode::InvokeEvent on has to call vtkMRMLNode::InvokeCustomModifiedEvent. InvokeCustomModifiedEvent behaves the same way as InvokeEvent by default, but if DisableModifiedEvent is enabled then InvokeCustomModifiedEvent only emits the event when EndModify is called (after invoking the pending standard Modified event). git-svn-id: http://svn.slicer.org/Slicer4/trunk@24031 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLLinearTransformNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformNode.h | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformableNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLTransformableNode.h | Diff File | ||
| mod - Modules/Loadable/Markups/MRML/vtkMRMLMarkupsNode.cxx | Diff File | ||
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master d3c834e9 2015-03-08 00:34:56 Details Diff |
BUG: Fixed crash in CropVolumeSelfTest vtkImageData observer was not removed when vtkMRMLScalarVolumeNode::SetAndObserveImageData(NULL) was called. This caused crash when Modified() was called on the vtkImageData because the target object of the observation (vtkTrivialProducer) is deleted by this->SetImageDataConnection(0). git-svn-id: http://svn.slicer.org/Slicer4/trunk@24030 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLVolumeNode.cxx | Diff File | ||
