Changesets: Import 2017-06-07 23:51:09
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master 49d072f5 2014-06-27 20:55:49 Details Diff |
STYLE: Add .gitignore file git-svn-id: http://svn.slicer.org/Slicer4/trunk@23392 3bd1e089-480b-0410-8dfb-8563597acbee |
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| add - .gitignore | Diff File | ||
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master ede216f0 2014-06-27 17:33:27 Details Diff |
BUG: 3751. Fixed typo in the vtkMRMLModelNode::ApplyTransform code that broke hardening. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23391 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLModelNode.cxx | Diff File | ||
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master a2ce367a 2014-06-27 17:32:34 Details Diff |
BUG: Fix slicerExtensionWizard in MacOSX package. Fixes 0003750 This commit fixes the following error: //----- /Volumes/Slicer-4.3.1-2014-06-26-macosx-amd64/Slicer.app/Contents/bin/slicerExtensionWizard: line 11: /Volumes/Slicer-4.3.1-2014-06-26-macosx-amd64/Slicer.app/Contents/bin/../Slicer: No such file or directory Traceback (most recent call last): File "/Volumes/Slicer-4.3.1-2014-06-26-macosx-amd64/Slicer.app/Contents/bin/../libexec/Slicer-4.3/ExtensionWizard.py", line 6, in <module> from SlicerWizard import ExtensionWizard ImportError: No module named SlicerWizard //----- Instead of relying on Slicer launcher that is not available on MacOSX, the SlicerPython launcher available on all platform is configured with the path to the SlicerWizard module and the slicerExtensionWizard script is updated to use it. Co-authored-by: Peter Savadjiev <petersv@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23390 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/python_customPython_configure.cmake.in | Diff File | ||
| mod - Utilities/Scripts/slicerExtensionWizard-install.sh.in | Diff File | ||
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master 16ab275b 2014-06-27 13:05:41 Details Diff |
BUG: Update ITKv4 - Attempt to fix ResampleDTI tests This commit is an attempt to fix a regression introduced by previous ITKv4 update (r23373) that is causing the following tests to fail: py_vtkITKArchetypeDiffusionTensorReaderFile ResampleDTIVolumeRotationNNTest ResampleDTIVolume2RigidTransformsLinearTest ResampleDTIVolumeBSplineInterpolationTest ResampleDTIVolumeHFieldTest ResampleDTIVolumeBSplineWSInterpolationTest It updates ITKv4 integrating a "work-in-progress" patch proposed by Bradley Lowekamp: //------- WIP: Add additional MetaDataObject explicit instantiation. The MetaDataObject of std::vector<std::vector<double> > > use by Slicer's ResampleDTI module. This needed to be explicitly instantiated and exported to enable dynamic_casts to correctly work. Additionally other related types have been added that may be used in other applications. See http://review.source.kitware.com/#/c/15945/ //------- git-svn-id: http://svn.slicer.org/Slicer4/trunk@23389 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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master 7ac0b992 2014-06-27 10:03:29 Details Diff |
ENH: Update SimpleFilters This commit updates both SimpleFilters documentation strings presented in the help section, and json description used to described the filters. b27cdf6 Remove statistics only filters 148d863 Update help and acknowledgment text bcdabde Fix json syntax issue StatisticsImageFilter c62f9a8 Removing Filters which produce labelmaps as outputs 77fb3ac SimpleITK cd897256 Filter descriptions (reduced) 85d1ab2 Add utility script to generate Wiki table of filter From: Bradley Lowekamp <blowekamp@mail.nih.gov> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23388 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master a0e2c030 2014-06-26 22:51:54 Details Diff |
ENH: Added mouse cursor position to vtkMRMLCrosshairNode. Now cursor (now only mouse position in 2D Slice view, but later also other pointing devices can be supported) position can be obtained by observing the vtkMRMLCrosshairNode singleton node. The feature is used in: * DataProbe window * Transform info window (showing the transform displacement vector value at the current mouse position in real-time) After the integration into the Slicer core is done, it will be also used in MultiVolume, Multidimensional data for live 3D graphing. Also separated SetCursorPositionRAS and SetCursorPositionXYZ methods to allow 3D-only positioning devices to specify the cursor position (when no 2D slice position is available) From: Andras Lasso <lasso@queensu.ca> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23387 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLCrosshairNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLCrosshairNode.h | Diff File | ||
| mod - Libs/MRML/DisplayableManager/vtkMRMLCrosshairDisplayableManager.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/Resources/UI/qSlicerTransformsModuleWidget.ui | Diff File | ||
| mod - Modules/Loadable/Transforms/Widgets/Resources/UI/qMRMLTransformInfoWidget.ui | Diff File | ||
| mod - Modules/Loadable/Transforms/Widgets/qMRMLTransformInfoWidget.cxx | Diff File | ||
| mod - Modules/Loadable/Transforms/Widgets/qMRMLTransformInfoWidget.h | Diff File | ||
| mod - Modules/Scripted/DataProbe/DataProbe.py | Diff File | ||
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master 0f58304a 2014-06-26 22:31:01 Details Diff |
BUG: Update ITKv4 project to backport fix related to GDCMIO // -------- BUG: Do not ENABLED_SHARED for GDCMIO With shared libraries on windows and export specification with gcc, memory leaking is being detected by valgrind. This should be re-enabled when GDCM it self is enabled as shared with export specifications. // -------- git-svn-id: http://svn.slicer.org/Slicer4/trunk@23386 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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master d12993cc 2014-06-26 18:08:51 Details Diff |
BUG: set main app shortcut context to allow unambiguous QActions handlers in child widgets git-svn-id: http://svn.slicer.org/Slicer4/trunk@23385 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Applications/SlicerApp/qSlicerAppMainWindow.cxx | Diff File | ||
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master 10336a2c 2014-06-26 16:57:14 Details Diff |
ENH: Add prostate MR-Ultrasound to sample data git-svn-id: http://svn.slicer.org/Slicer4/trunk@23384 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/SampleData/SampleData.py | Diff File | ||
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master d4ab87dc 2014-06-26 13:09:35 Details Diff |
ENH: Expose vtkMRMLSceneViewNode::GetNodesByClass to python Since std::vector<vtkMRMLNode *> is not "wrapped" by PythonQt, this commit add an alternative method returning the nodes as a vtkCollection. From: Nicole Aucoin <nicole@bwh.harvard.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23383 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/Testing/vtkMRMLSceneViewNodeTest1.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLSceneViewNode.cxx | Diff File | ||
| mod - Libs/MRML/Core/vtkMRMLSceneViewNode.h | Diff File | ||
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master c3fd28b7 2014-06-26 12:02:12 Details Diff |
STYLE: Elaborate doxygen documentation of qMMRLSCeneModel::nodeIndex git-svn-id: http://svn.slicer.org/Slicer4/trunk@23382 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLSceneModel.h | Diff File | ||
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master 3ed8bf74 2014-06-26 12:02:09 Details Diff |
ENH: Expose qMRMLSceneModel mrml/setMRMLScene methods to python. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23381 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLSceneModel.h | Diff File | ||
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master 55b59fe9 2014-06-26 12:02:06 Details Diff |
STYLE: Simplify qMRMLScene canBeAChild/canBeAParent implementation git-svn-id: http://svn.slicer.org/Slicer4/trunk@23380 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Widgets/qMRMLSceneDisplayableModel.cxx | Diff File | ||
| mod - Libs/MRML/Widgets/qMRMLSceneHierarchyModel.cxx | Diff File | ||
| mod - Modules/Loadable/SubjectHierarchy/Widgets/qMRMLSceneSubjectHierarchyModel.cxx | Diff File | ||
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master 1219b7da 2014-06-26 09:33:48 Details Diff |
ENH: update to latest LandmarkRegistration code git-svn-id: http://svn.slicer.org/Slicer4/trunk@23379 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master a663d6af 2014-06-26 08:52:07 Details Diff |
ENH: document string for markups event enum git-svn-id: http://svn.slicer.org/Slicer4/trunk@23378 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Markups/MRML/vtkMRMLMarkupsNode.h | Diff File | ||
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master 01d81d61 2014-06-26 02:24:31 Details Diff |
COMP: Update MultiVolumeExplorer project to fix unused-local-typedefs warnings $ git shortlog 17a9095..d68663f --no-merges Jean-Christophe Fillion-Robin (1): COMP: Fix unused-local-typedefs warnings git-svn-id: http://svn.slicer.org/Slicer4/trunk@23377 3bd1e089-480b-0410-8dfb-8563597acbee |
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master 3302a784 2014-06-26 02:24:30 Details Diff |
COMP: Fix unused variable warning in vtkOrientedGridTransform git-svn-id: http://svn.slicer.org/Slicer4/trunk@23376 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkOrientedGridTransform.cxx | Diff File | ||
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master 7df30463 2014-06-26 02:24:28 Details Diff |
COMP: Fix sign-compare warning in vtkMRMLTransformStorageNode git-svn-id: http://svn.slicer.org/Slicer4/trunk@23375 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLTransformStorageNode.cxx | Diff File | ||
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master 58719a3b 2014-06-26 02:24:27 Details Diff |
BUG: Update BRAINSTools to include DWIConvert interface tweaks. See 0003693 $ git shortlog 8d870f0..ce609cb Hans Johnson (2): ENH: Improve Slicer interface to DWIConvert ENH: Fine tuning the GUI for ease of use. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23374 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master 720bbaab 2014-06-26 02:24:25 Details Diff |
ENH: Update (1) ITKv4 from v4.5.2 to v4.6rc01 and (2) update BRAINSTools // ------------------------ BRAINSTools * Compliant with ITKv4 registration framework. This changes the fundamental methods for registration to use the ITKv4 framework, while maintaining both the API and the same results for all regression tests. * DWIConvert tool also add features for reading additional scanner types. // ------------------------ // ------------------------ ITKv4 - New Features * CMake improvements - Improved Remote Module support - Add ITK_FORBID_DOWNLOADS for package maintainers - ITK_USE_SYSTEM_EXPAT available * Filtering Improvements - Moved TransformToDisplacementField out of Review - An entire noise image generation module - http://hdl.handle.net/10380/3158 - Better pipeline support for ResampleImageFilter - Move MagnitudeAndPhaseToComplexImageFilter out of Review - Setters for LabelMap overlay filters - More consistent filter progress reporting * ImageO improvements - Register the GE image formats by default - More IO modules are built as shared libraries - OpenFileForReading/Writing methods in ImageIO - Support for system tiff 4.0.0-4.0.2 (e.g. some Ubuntu versions) - Mangling to internal OpenJPEG - SCIFIO improvements * Infrastructure improvements - MetaDataObject print specialization for common types - Improvements to ResourceProbe and RealTimeClock - More Solve methods for VNLSparseLUSolverTraits - Output stream operator for LightObject exposed - FFTW bump to 3.3.3 * New Remote Modules - Skull stripper - http://hdl.handle.net/10380/3353 - Wiki examples - Sphinx examples - Variational registration - http://hdl.handle.net/10380/3460 - AnalyzeObjectMapIO - http://hdl.handle.net/1926/593 - FDFImageIO - SplitComponents - http://hdl.handle.net/10380/320 * Registrationv4 improvements - v4 regular step gradient descent optimizer - v4 amoeba optimizer - v4 exhaustive optimizer - v4 Powell optimizer - v4 one-plus-one-evolutionary optimizer - v4 LBFGS optimizer improvements - Use registration method classes as pipeline filters * Performance improvements - Registrationv4 - Histogram computation - Improved SmartPointer copy - CompositeTransform - Registration Jacobian re-use * Wrapping improvements - pygccxml 1.0.0 - .pth symlink usable in a virtualenv - Cleaner CMake configuration - SWIG and PCRE updated to 3.0.2, 8.34 - Latest GCCXML, which works with GCC 4.9 - Sweeping wrapping generation cleanup * Many style improvements -- ITK gets more stylish with every release! * Improved code coverage -- some measures put us over 85%! // ------------------------ Co-authored-by: Hans Johnson <hans-johnson@uiowa.edu> git-svn-id: http://svn.slicer.org/Slicer4/trunk@23373 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - CMakeLists.txt | Diff File | ||
| mod - SuperBuild.cmake | Diff File | ||
| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
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master c89f1e40 2014-06-25 23:28:52 Details Diff |
ENH: Temporary fix for contour slice intersections Based on today's discussions, a type check has been added to model displayable manager to facilitate proper contour display until the new segmentation node object is created and a new displayable manager is added. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23372 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/DisplayableManager/vtkMRMLModelSliceDisplayableManager.cxx | Diff File | ||
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master ebbdee91 2014-06-25 19:59:02 Details Diff |
ENH: Subject hierarchy study name now contains date To facilitate easy differentiation between studies with same name git-svn-id: http://svn.slicer.org/Slicer4/trunk@23371 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Scripted/DICOM/DICOMLib/DICOMPlugin.py | Diff File | ||
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master 835cb07c 2014-06-25 19:58:06 Details Diff |
BUG: Two fixes in vtkSlicerSubjectHierarchyModuleLogicTest Still fails due to transform hardening issue (investigating) git-svn-id: http://svn.slicer.org/Slicer4/trunk@23370 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Libs/MRML/Core/vtkMRMLHierarchyNode.cxx | Diff File | ||
| mod - Modules/Loadable/SubjectHierarchy/Testing/Cxx/vtkSlicerSubjectHierarchyModuleLogicTest.cxx | Diff File | ||
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master 6dc34990 2014-06-25 18:50:42 Details Diff |
ENH: update to new LandmarkRegistration Makes use of the new fiducial end moving event git-svn-id: http://svn.slicer.org/Slicer4/trunk@23369 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - SuperBuild.cmake | Diff File | ||
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master 940b6937 2014-06-25 18:50:40 Details Diff |
ENH: add an event type for the end of a fiducial interaction This can be used to trigger execution at the end of the interaction instead of doing it on every mouse move. git-svn-id: http://svn.slicer.org/Slicer4/trunk@23368 3bd1e089-480b-0410-8dfb-8563597acbee |
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| mod - Modules/Loadable/Markups/MRML/vtkMRMLMarkupsNode.h | Diff File | ||
| mod - Modules/Loadable/Markups/MRMLDM/vtkMRMLMarkupsFiducialDisplayableManager2D.cxx | Diff File | ||
