0004290: ITK warning: Refusing to register transform - MantisBT

ID	Project	Category	View Status	Date Submitted	Last Update

0004290	Slicer4	Core: Base Code	public	2016-10-27 21:50	2018-03-02 11:01

Reporter	jcfr	Assigned To	jcfr
Priority	normal	Severity	minor	Reproducibility	always
Status	closed	Resolution	fixed
Product Version	Slicer 4.7.0
Target Version	Slicer 4.7.0	Fixed in Version	Slicer 4.7.0

Summary	0004290: ITK warning: Refusing to register transform
Description	Following r25482, the warnings reported below are displayed when starting Slicer: See http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25482 Observed on Ubuntu 15.10 / g++ (Ubuntu 5.2.1-22ubuntu2) 5.2.1 20151010 Introduced following ITK commit https://github.com/InsightSoftwareConsortium/ITK/commit/67a74d5 <pre> WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseDisplacementFieldTransform_float_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseDisplacementFieldTransform_double_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseBSplineDeformableTransform_float_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseBSplineTransform_float_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseBSplineDeformableTransform_double_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseBSplineTransform_double_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseThinPlateSplineKernelTransform_float_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "InverseThinPlateSplineKernelTransform_double_3_3" again! WARNING: In /home/jcfr/Projects/Slicer-Release/ITKv4/Modules/IO/TransformFactory/include/itkTransformFactoryBase.h, line 81 TransformFactoryBase (0x2d741a0): Refusing to register transform "ThinPlateSplineKernelTransform_float_3_3" again! </pre>
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jcfr 2016-10-28 17:09 administrator ~0014230	Fixed pushed here: https://github.com/Slicer/Slicer/pull/614

jcfr 2016-10-28 17:24 administrator ~0014231	In fact, previous PR was created while working on these fix: http://review.source.kitware.com/#/c/21677/2

blowekamp 2016-10-28 20:59 developer ~0014232	Neither of these patches address the warnings in this issue. The value of the b-spline order is not changed with this pull 0000614. It does address the conceptual conflating for the 3rd template parameter of the Dimension and BSpline order. The ITK patch http://review.source.kitware.com/#/c/21677/2 addresses warnings in SimpleITK related to duplicate registration of BSpline Transforms. And Bugs related to IO of BSplines with different orders not being loaded correctly.

blowekamp 2016-10-28 21:06 developer ~0014233	My suggestion to address the Slicer issue was to ensure that Slicer only register the transforms once. That is adding some type of static bool in the following method to ensure it is only executed once: https://github.com/Slicer/Slicer/blob/e8ab49bc2cfd025a31d242ce75c7af832d3503f3/Libs/MRML/Core/vtkITKTransformConverter.h#L116-L135 The counter suggestion was to add a static option to ITK's transform factory to disable the display of the warning.

bpaniagua 2016-11-07 14:40 developer ~0014237	Any progress in solving this issue? I am having this problem using Slicer GIT_TAG 76ea6f7945a1135c2b8045fd8b281d5ed5965895 0002016-11-03

jcfr 2016-11-07 15:28 administrator ~0014239	Thanks to Francois, this should be addressed by https://github.com/InsightSoftwareConsortium/ITK/commit/abb121659478e87b776274a6c8bf24ff9095162c Building locally, I will update Slicer trunk shortly.

jcfr 2016-11-07 16:20 administrator ~0014240	Fixed in http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25508

Import 2017-06-07 23:51:09: master fd05072a 2016-11-07 16:08:53 jcfr Details Diff	ENH: Update ITK. Fixes 0004290 This commit addresses issue 0004290 avoiding the "already registered transform" warning from being reported. $ git shortlog 9071eea..883ecb4 --no-merges Bill Lorensen (1): ENH: Bump WikiExamples remote module version Bradley Lowekamp (2): BUG: Use BSpline Order 3 for 2D in transform factory. ENH: Add spline order to BSplineTransform's string id Francois Budin (6): ENH: Update SCIFIO to latest version on 10/25/2016 BUG: Swig and PCRE do not support space in installation paths BUG: exit() call from within piped commands was not exiting the script BUG: Typo in folder creation command ENH: Only display message for transform registered multiple times in debug ENH: Image spacing must be positive Gilles Filippini (1): BUG: Use NATIVE_HBOOL for encoding HDF5 types. Jon Haitz Legarreta (32): ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. STYLE: Improve the itkVectorRescaleIntensityImageFilter style. ENH: Print missing ivar in filter PrintSelf method. ENH: Improve itkComplexToImaginaryFilter coverage. ENH: Improve itkComplexToPhaseImageFilter coverage. ENH: Improve itkComplexToModulusImageFilter coverage. ENH: Improve itkComplexToRealImageFilter coverage. ENH: Improve itkVectorResampleImageFilter coverage. ENH: Add GetTransform method. ENH: Improve itkConstrainedValueAdditionImageFilter coverage. ENH: Improve itkModulusImageFilter coverage. ENH: Improve itkLog10ImageFilter coverage. ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. ENH: Improve itkLogImageFilter coverage. ENH: Improve itkInvertIntensityImageFilter coverage. STYLE: Improve itkInvertIntensityImageFilter style. DOC: Add missing doc to itkInvertIntensityImageFilter. STYLE: Improve itkIntensityWindowingImageFilter style. STYLE: Use initialization lists. ENH: Improve itkIntensityWindowingImageFilter coverage. ENH: Improve itkNaryMaximumImageFilter coverage. COMP: Fix std::precision type casting warning. ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. ENH: Remove SmartPointers being explicitly initialized to null. STYLE: Improve the itkPointSetToImageRegistrationMethod style. ENH: Improve itkPointSetToImageRegistration coverage. STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. STYLE: Improve itkVectorResampleImageFilter style. STYLE: Improve the itkAntiAliasBinaryImageFilter style. ENH: Improve trigonometric function filters' coverage. STYLE: Remove test names from std::out messages. KWSys Robot (2): KWSys 2016-10-23 (b630d2f5) KWSys 2016-11-03 (37306a1c) Matthew McCormick (11): BUG: Use SpacePrecisionType in TileImageFilter ENH: Run .sha512, .md5 simultaneous modification pre-commit check BUG: Correct CastXML Windows binary BUG: Support non-zero Index in LevelSetNeighborhoodExtractor ENH: Add ArchiveTestingDataOnGirder.py BUG: Correct AtanRegularizationHeavisideStepFunction derivative ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh BUG: Remove extra HessianToObjectness content links ENH: Wrap SpatialFunction float types with ITK_WRAP_float BUG: Bump PerformanceBenchmarking to 2016-11-04 BUG: itk_python_expression_add_test too many quotes. Taylor Braun-Jones (2): COMP: Fix truncation from double to float warning DOC: Fix incorrect itkFactorylessNewMacro documentation git-svn-id: http://svn.slicer.org/Slicer4/trunk@25508 3bd1e089-480b-0410-8dfb-8563597acbee
	mod - SuperBuild/External_ITKv4.cmake		Diff File

Date Modified	Username	Field	Change
2016-10-27 21:50	jcfr	New Issue
2016-10-27 21:50	jcfr	Status	new => assigned
2016-10-27 21:50	jcfr	Assigned To	=> fbudin
2016-10-28 17:09	jcfr	Assigned To	fbudin => blowekamp
2016-10-28 17:09	jcfr	Note Added: 0014230
2016-10-28 17:24	jcfr	Note Added: 0014231
2016-10-28 20:59	blowekamp	Note Added: 0014232
2016-10-28 21:06	blowekamp	Note Added: 0014233
2016-11-07 14:40	bpaniagua	Note Added: 0014237
2016-11-07 15:28	jcfr	Note Added: 0014239
2016-11-07 15:28	jcfr	Assigned To	blowekamp => jcfr
2016-11-07 16:20	jcfr	Note Added: 0014240
2016-11-07 16:20	jcfr	Status	assigned => resolved
2016-11-07 16:20	jcfr	Fixed in Version	=> Slicer 4.7.0
2016-11-07 16:20	jcfr	Resolution	open => fixed
2017-06-10 08:51	jcfr	Changeset attached	=> Slicer master fd05072a
2018-03-02 11:01	jcfr	Status	resolved => closed