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IDProjectCategoryView StatusDate SubmittedLast Update
0002361Slicer4Core: CLI infrastructurepublic2012-07-27 08:052014-03-06 05:23
Reportermuratmaga Assigned Tomillerjv  
PrioritylowSeveritymajorReproducibilityalways
Status closedResolutionfixed 
Product VersionSlicer 4.1.0 
Target VersionSlicer 4.3.0Fixed in VersionSlicer 4.3.0 
Summary0002361: resamplescalarvectordwi.exe CLI module does not function in windows
Description

Slicer --launch lib/Slicer-4.1/cli-modules/ResampleScalarVolume.exe --spacing 2,2,2 c:/temp/807-r1_rec.nhdr cli.hdr

Gives the downsampled output I want but

Slicer --launch lib/Slicer-4.1/cli-modules/ResampleScalarVectorDWIVolume.exe --spacing 2,2,2 c:/temp/807-r1_rec.nhdr cli.hdr
Doesn't do anything.

I also wasn't able to locate any command line options for this module via --help option

TagsNo tags attached.

Activities

jcfr

jcfr

2012-08-22 05:53

administrator   ~0005688

Issue targeted for 4.2.0, re-target if it can't be addressed by sept 1st.
nicole

nicole

2012-10-25 11:47

administrator   ~0006755

Last edited: 2012-10-25 11:47

Just tried:
./Slicer --launch lib/Slicer-4.1/cli-modules/Debug/ResampleScalarVectorDWIVolume.exe --help
and saw the extensive help output on my cygwin console

The format might be different for the call, it's a more complicated module than ResampleScalarVolume.
jcfr

jcfr

2012-10-25 12:10

administrator   ~0006759

If the module are executed within a installed tree, console IO are disabled in the launcher. See issue 0001683
jcfr

jcfr

2012-10-25 12:14

administrator   ~0006760

Murat> Could you provide the data causing problem ?
jcfr

jcfr

2012-10-25 12:15

administrator   ~0006761

Considering that:

  • we are missing information/data allowing to reproduce the issue
  • the 4.2 release will happen this weekend

.. the issue as been retargeted to 4.3
muratmaga

muratmaga

2012-10-25 12:32

reporter   ~0006763

When I issue the following command in Windows 7, nothing (not even the splash screen) happens. Version I use is 4.1.1

C:\Program Files (x86)\Slicer 4.1.1>Slicer --launch lib/Slicer-4.1/cli-modules/R
esampleScalarVectorDWIVolume.exe --help

Without the --help option the Splash screen come up for a second.

Thus, I cannot locate the proper command line options for this tool to run it correctly.
nicole

nicole

2012-10-25 12:42

administrator   ~0006768

Try running it from the GUI and then looking in the Error Log window for the command line output to see what arguments are being passed in that case.
jcfr

jcfr

2012-10-25 12:50

administrator   ~0006769

Here is a workaround:

1) C:\Program Files (x86)\Slicer 4.1.1>Slicer --launch "C:/Windows/System32/cmd.exe" /c start cmd

2) It should then be possible to invoke any executable and see the associated output.

You could also add the following to bin/SlicerLauncherSettings.ini. It would then be possible to start a "cmd.exe" with the Slicer env doing the following:

./Slicer --cmd

[ExtraApplicationToLaunch]

cmd/shortArgument=
cmd/help=Start cmd
cmd/path=C:/Windows/System32/cmd.exe
cmd/arguments=/c start cmd
jcfr

jcfr

2013-07-31 20:37

administrator   ~0009320

Since a workaround has been provided and the issue has not been updated in more than 6 months, resolving the issue.

Note also that the "--cmd" argument has been added to Slicer launcher in r19596 [1]

[1] http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=19596
jcfr

jcfr

2014-03-06 05:21

administrator   ~0011148

Closing resolved issues that have not been updated in more than 3 months

Issue History

Date Modified Username Field Change
2012-07-27 08:05 muratmaga New Issue
2012-07-27 08:05 muratmaga Status new => assigned
2012-07-27 08:05 muratmaga Assigned To => millerjv
2012-08-22 05:53 jcfr Target Version => Slicer 4.2.0 - Feature freeze Sept 1st 2012
2012-08-22 05:53 jcfr Note Added: 0005688
2012-10-25 11:41 jcfr Priority normal => low
2012-10-25 11:47 nicole Note Added: 0006755
2012-10-25 11:47 nicole Note Edited: 0006755
2012-10-25 12:10 jcfr Note Added: 0006759
2012-10-25 12:14 jcfr Note Added: 0006760
2012-10-25 12:14 jcfr Target Version Slicer 4.2.0 - coming release => Slicer 4.3.0
2012-10-25 12:15 jcfr Note Added: 0006761
2012-10-25 12:15 jcfr Status assigned => feedback
2012-10-25 12:32 muratmaga Note Added: 0006763
2012-10-25 12:42 nicole Note Added: 0006768
2012-10-25 12:50 jcfr Note Added: 0006769
2013-07-31 20:37 jcfr Note Added: 0009320
2013-07-31 20:37 jcfr Status feedback => resolved
2013-07-31 20:37 jcfr Fixed in Version => Slicer 4.3.0
2013-07-31 20:37 jcfr Resolution open => fixed
2014-03-06 05:21 jcfr Note Added: 0011148
2014-03-06 05:23 jcfr Status resolved => closed