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IDProjectCategoryView StatusLast Update
0000592Slicer3Command Line Modules (Applications/CLI)public2020-03-12 10:52
Reporterericmaltbie Assigned Toalexy  
PrioritynormalSeverityfeatureReproducibilityN/A
Status closedResolutionopen 
Summary0000592: No ROI select feature in Slicer 3.5
Description

Slicer 3.3 had a module called ROI Select which I used frequently to designate secondary ROIs that the fibers either must pass or must not pass. I found this to be an invaluable tool, but it appears to have been removed from Slicer 3.5. This is a necessary feature for my fiber tracking.

TagsNo tags attached.

Activities

nicole

nicole

2009-06-01 14:43

administrator   ~0001000

The module is still there on my Linux64 Slicer3.5 build today, under the Modules drop down menu, Tractography, Editor, ROISelect.
Which OS are you using?

ericmaltbie

ericmaltbie

2009-06-02 06:26

reporter   ~0001002

I am using a Linux64 and I just downloaded Slicer3.5-alpha-2009-06-01-linux-x86_64. Editor does not appear under Tractography and ROISelect is also missing from AllModules.

nicole

nicole

2009-06-02 06:55

administrator   ~0001003

I checked the repository logs, and it turns out that the module was removed at the request of the developer, see the comment on revision 8999:
http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/Tractography/CMakeLists.txt?rev=8999&view=log
I'll point Lauren to this bug and see if she has a solution to propose. If you've got a version of slicer that you've built yourself you can just undo that change, adding in the line "Editor" to the subdirs command, and rebuild, as the code is still there.

nicole

nicole

2009-06-05 06:36

administrator   ~0001004

From the developer:
I am working on a grant due Friday but I can look at this next week -- the
module did not work in slicer3 how was anyone using it? There is a module in
python that does work -- C-F knows about it, it was created by Demian. Could
you inform the user to use this module instead?

Waiting to hear from CF.

rausch

rausch

2009-06-29 06:43

reporter   ~0001022

The PNL RAs are interested in this too. Please let me know about the python module, or what its status is in Slicer 3.

nicole

nicole

2009-07-01 12:36

administrator   ~0001026

I talked to Demian, he's got some non distributable code that he can let me look at. It relies on MRML ROI List nodes, which I double checked are still in MRML, and can be passed to CLI's. Demian may be able to get permission to distribute his python module, update next week.

ericmaltbie

ericmaltbie

2009-07-14 07:03

reporter   ~0001029

Is there any update on the availability of an ROI fiber tracking selection filter for 3.5? Thanks

pieper

pieper

2009-07-14 10:12

administrator   ~0001031

We'll start by re-enabling the existing code and then see what issues are left (which things led Lauren to think it doesn't work correctly).

pieper

pieper

2009-09-29 11:55

administrator   ~0001179

I just re-enabled this in the trunk, so it should start showing up in the nightly builds.

jcfr

jcfr

2020-03-12 10:52

administrator   ~0016579

Closing. Slicer3 is not being developed anymore.

Issue History

Date Modified Username Field Change
2009-05-21 06:29 ericmaltbie New Issue
2009-06-01 14:43 nicole Note Added: 0001000
2009-06-02 06:26 ericmaltbie Note Added: 0001002
2009-06-02 06:55 nicole Note Added: 0001003
2009-06-05 06:36 nicole Note Added: 0001004
2009-06-29 06:43 rausch Note Added: 0001022
2009-07-01 12:36 nicole Note Added: 0001026
2009-07-14 07:03 ericmaltbie Note Added: 0001029
2009-07-14 10:12 pieper Note Added: 0001031
2009-07-14 10:12 pieper Assigned To => alexy
2009-07-14 10:12 pieper Status new => assigned
2009-09-29 11:55 pieper Note Added: 0001179
2020-03-12 10:52 jcfr Status assigned => closed
2020-03-12 10:52 jcfr Note Added: 0016579