View Issue Details
ID | Project | Category | View Status | Date Submitted | Last Update |
---|---|---|---|---|---|
0004622 | Slicer4 | Module Editor | public | 2018-10-07 16:17 | 2018-12-12 14:30 |
Reporter | CDonatelli | Assigned To | pieper | ||
Priority | high | Severity | major | Reproducibility | sometimes |
Status | resolved | Resolution | no change required | ||
Product Version | Slicer 4.8.1 | ||||
Target Version | Fixed in Version | ||||
Summary | 0004622: Editor will not allow Remove Island Effect | ||||
Description | I cannot use the modify island effect to edit my segmentation. I've tried different files as well as re-starting my computer several times. | ||||
Steps To Reproduce | Open nrrd file | ||||
Additional Information | [DEBUG][Qt] 07.10.2018 12:59:39 [] (unknown:0) - Session start time .......: 2018-10-07 12:59:39 You may be able to continue from this point, but results are undefined. Suggested action is to save your work and restart. If you have a repeatable sequence of steps that causes this message, please report the issue following instructions available at http://slicer.org The message detail is: Exception thrown in event: bad allocation" You may be able to continue from this point, but results are undefined. Suggested action is to save your work and restart. If you have a repeatable sequence of steps that causes this message, please report the issue following instructions available at http://slicer.org The message detail is: Exception thrown in event: bad allocation" | ||||
Tags | No tags attached. | ||||
Slicer_26813_20181007_125939.log (4,022 bytes) |
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Hi - When you get a "bad allocation" message it means you've run out of memory. You can either get more memory (buy ram or increase virtual memory) or you can use the Crop Volume module to reduce the size of the problem to fit in existing memory. Also, the Editor module has been upgraded in recent Slicer's as the Segment Editor module, with all the old features plus a bunch more. We won't be maintaining the old Editor module any more. -Steve |
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Hello Steve, Thanks for the information. I've been using a pretty powerful computer and the task manager says slicer is only using 65% of the memory when trying to perform this operation. That is a lot though, so I'll try to cut it down in some way. I do like the Segment Editor module, but, unfortunately, I need to be able to save my segmented morphology as a .nrrd file so that I can re-slice it in image J for later analysis. I haven't been able to find a way to save the segments created in Segment Editor as anything but an STL or surface model, so I loose all the density data. Do you happen to know a way to save segments created in Segment Editor as a nrrd or image stack? Thanks so much! |
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Hi - At the bottom of the bottom of the Segmentations module you can export the segmentation as a labelmap volume that you can store as a regular nrrd file. Not sure how the memory management may be better or worse in the Segment Editor so you may or may not still need to crop. Best, |
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That's great, thanks! Looks like I need a memory upgrade for my computer after all. Thanks again! |
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Date Modified | Username | Field | Change |
---|---|---|---|
2018-10-07 16:17 | CDonatelli | New Issue | |
2018-10-07 16:17 | CDonatelli | Status | new => assigned |
2018-10-07 16:17 | CDonatelli | Assigned To | => pieper |
2018-10-07 16:17 | CDonatelli | File Added: Slicer_26813_20181007_125939.log | |
2018-10-08 15:29 | pieper | Status | assigned => feedback |
2018-10-08 15:29 | pieper | Note Added: 0016089 | |
2018-10-09 14:30 | CDonatelli | Note Added: 0016103 | |
2018-10-09 14:30 | CDonatelli | Status | feedback => assigned |
2018-10-09 14:35 | pieper | File Added: export.png | |
2018-10-09 14:35 | pieper | Note Added: 0016104 | |
2018-10-10 13:41 | CDonatelli | Note Added: 0016107 | |
2018-12-12 14:30 | lassoan | Status | assigned => resolved |
2018-12-12 14:30 | lassoan | Resolution | open => no change required |