View Issue Details

IDProjectCategoryView StatusLast Update
0004244Slicer4Core: Base Codepublic2018-03-02 11:02
Reporteryifan916 Assigned Tojcfr  
PriorityimmediateSeverityblockReproducibilityalways
Status closedResolutionfixed 
PlatformOS X EI CAPTAINOSOS Version10.11.6
Product Version 
Target VersionFixed in VersionSlicer 4.7.0 
Summary0004244: cannot open any file
Description

I clicked "add data" button and chose the file I would like to import.
But it just cannot work no matter what format it was (gipl or nerd).
The progress bar flashed very quickly. Nothing shown in any of the view.
I cannot import any file.

Looking forward to getting help! Thank you!!!

Additional Information

[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - Session start time .......: 2016-08-09 23:22:27
[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - Slicer version ...........: 4.5.0-2016-08-04 (revision 25264) macosx-amd64 - installed
[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - Operating system .........: Mac OS X / 10.11.6 / 15G31 - 64-bit
[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - Memory ...................: 8192 MB physical, 1024 MB virtual
[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - CPU ......................: GenuineIntel Intel(R) Core(TM) i5-5287U CPU @ 2.90GHz, 2 cores, 4 logical processors
[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - Developer mode enabled ...: no
[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - Prefer executable CLI ....: no
[DEBUG][Qt] 09.08.2016 23:22:27 [] (unknown:0) - Additional module paths ..: (none)
[DEBUG][Qt] 09.08.2016 23:22:29 [] (unknown:0) - Number of registered modules: 147
[DEBUG][Qt] 09.08.2016 23:22:30 [] (unknown:0) - Number of instantiated modules: 147
[WARNING][Qt] 09.08.2016 23:22:30 [] (unknown:0) - When loading module "CLIEventTest" , the dependency "CLI4Test" failed to be loaded.
[INFO][Stream] 09.08.2016 23:22:34 [] (unknown:0) - Initializing terminology mapping for map file /Applications/Slicer.app/Contents/share/Slicer-4.5/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
[INFO][Stream] 09.08.2016 23:22:34 [] (unknown:0) - 288 terms were read for Slicer LUT GenericAnatomyColors
[WARNING][Qt] 09.08.2016 23:22:35 [] (unknown:0) - When loading module "TwoCLIsInARowTest" , the dependency "CLI4Test" failed to be loaded.
[WARNING][Qt] 09.08.2016 23:22:35 [] (unknown:0) - When loading module "TwoCLIsInParallelTest" , the dependency "CLI4Test" failed to be loaded.
[DEBUG][Qt] 09.08.2016 23:22:35 [] (unknown:0) - Number of loaded modules: 144
[DEBUG][Qt] 09.08.2016 23:22:35 [] (unknown:0) - Switch to module: "Welcome"
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - File "/Applications/Slicer.app/Contents/lib/Slicer-4.5/qt-scripted-modules/DataProbe.py", line 62, in addView
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - parent = slicer.util.findChildren(text='Data Probe')[0]
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - File "/Applications/Slicer.app/Contents/bin/Python/slicer/util.py", line 196, in findChildren
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - if fnmatch.fnmatchcase(attr_name, kwargs[attribute]):
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - File "/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/fnmatch.py", line 83, in fnmatchcase
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - return re_pat.match(name) is not None
[CRITICAL][Stream] 09.08.2016 23:22:35 [] (unknown:0) - TypeError: expected string or buffer
[CRITICAL][FD] 09.08.2016 23:23:25 [] (unknown:0) - 2016-08-09 23:23:25.950 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[CRITICAL][FD] 09.08.2016 23:23:28 [] (unknown:0) - 2016-08-09 23:23:28.863 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[ERROR][VTK] 09.08.2016 23:23:28 [vtkITKArchetypeDiffusionTensorImageReaderFile (0x12a68d190)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/2 liu yiming post (gipl)/LIU^YIMING post.gipl does not exist.
[ERROR][VTK] 09.08.2016 23:23:28 [vtkCompositeDataPipeline (0x12a68e080)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeDiffusionTensorImageReaderFile(0x12a68d190) returned failure for request: vtkInformation (0x12a68fcd0)
Debug: Off
Modified Time: 890798
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:23:28 [vtkITKArchetypeImageSeriesVectorReaderSeries (0x12a673fb0)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/2 liu yiming post (gipl)/LIU^YIMING post.gipl does not exist.
[ERROR][VTK] 09.08.2016 23:23:28 [vtkCompositeDataPipeline (0x12a674ef0)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeImageSeriesVectorReaderSeries(0x12a673fb0) returned failure for request: vtkInformation (0x12a676b70)
Debug: Off
Modified Time: 892354
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:23:28 [vtkITKArchetypeImageSeriesScalarReader (0x11ad92b20)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/2 liu yiming post (gipl)/LIU^YIMING post.gipl does not exist.
[ERROR][VTK] 09.08.2016 23:23:28 [vtkCompositeDataPipeline (0x11ad93a70)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeImageSeriesScalarReader(0x11ad92b20) returned failure for request: vtkInformation (0x11ad956c0)
Debug: Off
Modified Time: 893158
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:23:28 [vtkMRMLNRRDStorageNode (0x12a6809c0)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx:181) - ReadData: This is not a nrrd file
[ERROR][VTK] 09.08.2016 23:23:28 [vtkMRMLVolumeArchetypeStorageNode (0x12a68c650)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:384) - ReadData: Unable to read DiffusionTensorVolume data from file: /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/2 liu yiming post (gipl)/LIU^YIMING post.gipl
[ERROR][VTK] 09.08.2016 23:23:28 [vtkMRMLNRRDStorageNode (0x12a6732b0)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx:181) - ReadData: This is not a nrrd file
[ERROR][VTK] 09.08.2016 23:23:28 [vtkMRMLVolumeArchetypeStorageNode (0x12a6734e0)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:317) - ReadData: Failed to instantiate a file reader
[ERROR][VTK] 09.08.2016 23:23:28 [vtkMRMLVolumeArchetypeStorageNode (0x11ad92110)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:392) - ReadData: Unable to read ScalarVolume data from file: /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/2 liu yiming post (gipl)/LIU^YIMING post.gipl
[CRITICAL][FD] 09.08.2016 23:23:45 [] (unknown:0) - 2016-08-09 23:23:45.867 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[DEBUG][Qt] 09.08.2016 23:23:50 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:57 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:58 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:58 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:58 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:58 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:58 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:23:58 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[DEBUG][Qt] 09.08.2016 23:24:02 [] (unknown:0) - qSlicerScalarOverlayReader::options(): 0x1113cbe10
[CRITICAL][FD] 09.08.2016 23:24:09 [] (unknown:0) - 2016-08-09 23:24:09.889 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[CRITICAL][FD] 09.08.2016 23:24:14 [] (unknown:0) - 2016-08-09 23:24:14.998 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[CRITICAL][FD] 09.08.2016 23:24:23 [] (unknown:0) - 2016-08-09 23:24:23.919 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[ERROR][VTK] 09.08.2016 23:24:23 [vtkITKArchetypeDiffusionTensorImageReaderFile (0x12a699720)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (gipl)/LIU^YIMING pre.gipl does not exist.
[ERROR][VTK] 09.08.2016 23:24:23 [vtkCompositeDataPipeline (0x12a69a630)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeDiffusionTensorImageReaderFile(0x12a699720) returned failure for request: vtkInformation (0x12a69c280)
Debug: Off
Modified Time: 914281
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:24:23 [vtkITKArchetypeImageSeriesVectorReaderSeries (0x12a66fe10)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (gipl)/LIU^YIMING pre.gipl does not exist.
[ERROR][VTK] 09.08.2016 23:24:23 [vtkCompositeDataPipeline (0x12a670d50)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeImageSeriesVectorReaderSeries(0x12a66fe10) returned failure for request: vtkInformation (0x12a6729d0)
Debug: Off
Modified Time: 915837
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:24:23 [vtkITKArchetypeImageSeriesScalarReader (0x128de8f10)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (gipl)/LIU^YIMING pre.gipl does not exist.
[ERROR][VTK] 09.08.2016 23:24:23 [vtkCompositeDataPipeline (0x12a66b520)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeImageSeriesScalarReader(0x128de8f10) returned failure for request: vtkInformation (0x12a697150)
Debug: Off
Modified Time: 916645
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:24:23 [vtkMRMLNRRDStorageNode (0x12a66c560)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx:181) - ReadData: This is not a nrrd file
[ERROR][VTK] 09.08.2016 23:24:23 [vtkMRMLVolumeArchetypeStorageNode (0x12a698c00)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:384) - ReadData: Unable to read DiffusionTensorVolume data from file: /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (gipl)/LIU^YIMING pre.gipl
[ERROR][VTK] 09.08.2016 23:24:23 [vtkMRMLNRRDStorageNode (0x1277ed490)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx:181) - ReadData: This is not a nrrd file
[ERROR][VTK] 09.08.2016 23:24:23 [vtkMRMLVolumeArchetypeStorageNode (0x1277ed3d0)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:317) - ReadData: Failed to instantiate a file reader
[ERROR][VTK] 09.08.2016 23:24:23 [vtkMRMLVolumeArchetypeStorageNode (0x128de8500)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:392) - ReadData: Unable to read ScalarVolume data from file: /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (gipl)/LIU^YIMING pre.gipl
[DEBUG][Qt] 09.08.2016 23:24:48 [] (unknown:0) - Switch to module: "Volumes"
[WARNING][Qt] 09.08.2016 23:24:54 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[DEBUG][Qt] 09.08.2016 23:25:02 [] (unknown:0) - Switch to module: "SubjectHierarchy"
[WARNING][Qt] 09.08.2016 23:25:02 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[DEBUG][Qt] 09.08.2016 23:25:04 [] (unknown:0) - Switch to module: "Volumes"
[DEBUG][Qt] 09.08.2016 23:25:06 [] (unknown:0) - Switch to module: "Models"
[WARNING][Qt] 09.08.2016 23:25:06 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[DEBUG][Qt] 09.08.2016 23:25:07 [] (unknown:0) - Switch to module: "Transforms"
[WARNING][Qt] 09.08.2016 23:25:12 [] (unknown:0) - libpng warning: iCCP: known incorrect sRGB profile
[WARNING][Qt] 09.08.2016 23:25:12 [] (unknown:0) - libpng warning: iCCP: known incorrect sRGB profile
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - Switch to module: "DICOM"
[WARNING][Qt] 09.08.2016 23:25:14 [] (unknown:0) - QSqlDatabasePrivate::addDatabase: duplicate connection name 'SLICER', old connection removed.
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - " DROP TABLE IF EXISTS 'SchemaInfo' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP TABLE IF EXISTS 'Images' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP TABLE IF EXISTS 'Patients' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP TABLE IF EXISTS 'Series' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP TABLE IF EXISTS 'Studies' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP TABLE IF EXISTS 'Directories' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - " DROP INDEX IF EXISTS 'ImagesFilenameIndex' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP INDEX IF EXISTS 'ImagesSeriesIndex' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP INDEX IF EXISTS 'SeriesStudyIndex' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "DROP INDEX IF EXISTS 'StudiesPatientIndex' ;"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - " CREATE TABLE 'SchemaInfo' ( 'Version' VARCHAR(1024) NOT NULL );"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "INSERT INTO 'SchemaInfo' VALUES('0.5.3');"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - " CREATE TABLE 'Images' ( 'SOPInstanceUID' VARCHAR(64) NOT NULL, 'Filename' VARCHAR(1024) NOT NULL , 'SeriesInstanceUID' VARCHAR(64) NOT NULL , 'InsertTimestamp' VARCHAR(20) NOT NULL , PRIMARY KEY ('SOPInstanceUID') );"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "CREATE TABLE 'Patients' ( 'UID' INTEGER PRIMARY KEY AUTOINCREMENT, 'PatientsName' VARCHAR(255) NULL , 'PatientID' VARCHAR(255) NULL , 'PatientsBirthDate' DATE NULL , 'PatientsBirthTime' TIME NULL , 'PatientsSex' varchar(1) NULL , 'PatientsAge' varchar(10) NULL , 'PatientsComments' VARCHAR(255) NULL );"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "CREATE TABLE 'Series' ( 'SeriesInstanceUID' VARCHAR(64) NOT NULL , 'StudyInstanceUID' VARCHAR(64) NOT NULL , 'SeriesNumber' INT NULL , 'SeriesDate' DATE NULL , 'SeriesTime' VARCHAR(20) NULL , 'SeriesDescription' VARCHAR(255) NULL , 'Modality' VARCHAR(20) NULL , 'BodyPartExamined' VARCHAR(255) NULL , 'FrameOfReferenceUID' VARCHAR(64) NULL , 'AcquisitionNumber' INT NULL , 'ContrastAgent' VARCHAR(255) NULL , 'ScanningSequence' VARCHAR(45) NULL , 'EchoNumber' INT NULL , 'TemporalPosition' INT NULL , PRIMARY KEY ('SeriesInstanceUID') );"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "CREATE TABLE 'Studies' ( 'StudyInstanceUID' VARCHAR(64) NOT NULL , 'PatientsUID' INT NOT NULL , 'StudyID' VARCHAR(255) NULL , 'StudyDate' DATE NULL , 'StudyTime' VARCHAR(20) NULL , 'AccessionNumber' VARCHAR(255) NULL , 'ModalitiesInStudy' VARCHAR(255) NULL , 'InstitutionName' VARCHAR(255) NULL , 'ReferringPhysician' VARCHAR(255) NULL , 'PerformingPhysiciansName' VARCHAR(255) NULL , 'StudyDescription' VARCHAR(255) NULL , PRIMARY KEY ('StudyInstanceUID') );"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - " CREATE UNIQUE INDEX IF NOT EXISTS 'ImagesFilenameIndex' ON 'Images' ('Filename');"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "CREATE INDEX IF NOT EXISTS 'ImagesSeriesIndex' ON 'Images' ('SeriesInstanceUID');"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "CREATE INDEX IF NOT EXISTS 'SeriesStudyIndex' ON 'Series' ('StudyInstanceUID');"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - "CREATE INDEX IF NOT EXISTS 'StudiesPatientIndex' ON 'Studies' ('PatientsUID');"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - " CREATE TABLE 'Directories' ( 'Dirname' VARCHAR(1024) , PRIMARY KEY ('Dirname') );"
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - SQL failed
Bad SQL: SELECT FROM TagCache LIMIT 1
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - Error text: No query Unable to fetch row
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - TagCacheDatabase NOT verified based on table check!
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - SQL failed
Bad SQL: SELECT
FROM TagCache LIMIT 1
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - Error text: No query Unable to fetch row
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - TagCacheDatabase NOT verified based on table check!
[DEBUG][Qt] 09.08.2016 23:25:14 [] (unknown:0) - TagCacheDatabase adding table
[DEBUG][Qt] 09.08.2016 23:25:18 [] (unknown:0) - Switch to module: "Welcome"
[CRITICAL][FD] 09.08.2016 23:29:59 [] (unknown:0) - 2016-08-09 23:29:59.957 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[CRITICAL][FD] 09.08.2016 23:30:02 [] (unknown:0) - 2016-08-09 23:30:02.438 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[ERROR][VTK] 09.08.2016 23:30:02 [vtkITKArchetypeDiffusionTensorImageReaderFile (0x12677f060)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (NRRD)/liu yiming pre NRRD.nrrd does not exist.
[ERROR][VTK] 09.08.2016 23:30:02 [vtkCompositeDataPipeline (0x12677fd20)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeDiffusionTensorImageReaderFile(0x12677f060) returned failure for request: vtkInformation (0x126781970)
Debug: Off
Modified Time: 955334
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:30:02 [vtkITKArchetypeImageSeriesVectorReaderSeries (0x126765900)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (NRRD)/liu yiming pre NRRD.nrrd does not exist.
[ERROR][VTK] 09.08.2016 23:30:02 [vtkCompositeDataPipeline (0x126766860)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeImageSeriesVectorReaderSeries(0x126765900) returned failure for request: vtkInformation (0x1267684d0)
Debug: Off
Modified Time: 956886
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:30:02 [vtkITKArchetypeImageSeriesScalarReader (0x12677b860)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/vtkITK/vtkITKArchetypeImageSeriesReader.cxx:220) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Archetype file /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (NRRD)/liu yiming pre NRRD.nrrd does not exist.
[ERROR][VTK] 09.08.2016 23:30:02 [vtkCompositeDataPipeline (0x126760100)] (/Users/kitware/Dashboards/Nightly/Slicer-0-build/VTKv7/Common/ExecutionModel/vtkExecutive.cxx:784) - Algorithm vtkITKArchetypeImageSeriesScalarReader(0x12677b860) returned failure for request: vtkInformation (0x126761d10)
Debug: Off
Modified Time: 957688
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
[ERROR][VTK] 09.08.2016 23:30:02 [vtkMRMLNRRDStorageNode (0x12b7393a0)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx:181) - ReadData: This is not a nrrd file
[ERROR][VTK] 09.08.2016 23:30:02 [vtkMRMLVolumeArchetypeStorageNode (0x12677e2d0)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:384) - ReadData: Unable to read DiffusionTensorVolume data from file: /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (NRRD)/liu yiming pre NRRD.nrrd
[ERROR][VTK] 09.08.2016 23:30:02 [vtkMRMLNRRDStorageNode (0x126764c00)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLNRRDStorageNode.cxx:181) - ReadData: This is not a nrrd file
[ERROR][VTK] 09.08.2016 23:30:02 [vtkMRMLVolumeArchetypeStorageNode (0x126764e70)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:317) - ReadData: Failed to instantiate a file reader
[ERROR][VTK] 09.08.2016 23:30:02 [vtkMRMLVolumeArchetypeStorageNode (0x12677ae50)] (/Users/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:392) - ReadData: Unable to read ScalarVolume data from file: /Users/linyifan/Documents/linyifan/???/002 STUDY/04 ??????/01 for test/1 liu yiming pre (NRRD)/liu yiming pre NRRD.nrrd
[CRITICAL][FD] 09.08.2016 23:37:41 [] (unknown:0) - 2016-08-09 23:37:41.997 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[CRITICAL][FD] 09.08.2016 23:38:01 [] (unknown:0) - 2016-08-09 23:38:01.659 Slicer[1238:312084] modalSession has been exited prematurely - check for a reentrant call to endModalSession:

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Activities

yifan916

yifan916

2016-08-10 08:59

reporter   ~0014064

problem solved!
it seems that i should put all the image files in the root directory of the slicer software.

Thank you!

lassoan

lassoan

2017-06-09 16:06

developer   ~0014686

This issue was fixed in 4.7 (was due to not robustly implemented Qt widget finding function)

Issue History

Date Modified Username Field Change
2016-08-09 11:52 yifan916 New Issue
2016-08-09 11:52 yifan916 Status new => assigned
2016-08-09 11:52 yifan916 Assigned To => jcfr
2016-08-10 08:59 yifan916 Note Added: 0014064
2017-06-09 16:06 lassoan Status assigned => resolved
2017-06-09 16:06 lassoan Resolution open => fixed
2017-06-09 16:06 lassoan Fixed in Version => Slicer 4.7.0
2017-06-09 16:06 lassoan Note Added: 0014686
2018-03-02 11:02 jcfr Status resolved => closed