0004004: SimpleITK interface to slicer broke in recent nightlys - MantisBT

ID	Project	Category	View Status	Date Submitted	Last Update

0004004	Slicer4	Core: Scripting (Wrapping, Python)	public	2015-06-12 19:10	2018-03-02 11:06

Reporter	hjmjohnson	Assigned To	jcfr
Priority	high	Severity	major	Reproducibility	always
Status	closed	Resolution	fixed
Platform	Mac	OS	Mac	OS Version	10.10.3
Product Version	Slicer 4.4.0
Target Version	Slicer 4.5.0-1	Fixed in Version	Slicer 4.5.0-1

Summary	0004004: SimpleITK interface to slicer broke in recent nightlys
Description	Python 2.7.3 (default, Mar 10 2015, 17:47:56) [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)] on darwin import sitkUtils as su su.PullFromSlicer("MRHead") <SimpleITK.SimpleITK.Image; proxy of <Swig Object of type 'std::vector< itk::simple::Image >::value_type *' at 0x17382fb70> > h=su.PullFromSlicer("MRHead") m= h > 128 su.PushLabel(m,"lbl.nii.gz") Traceback (most recent call last): File "<console>", line 1, in <module> File "/Users/johnsonhj/src/Slicer-03/Slicer-build/bin/Python/sitkUtils.py", line 159, in PushLabel PushToSlicer(sitkImage, nodeName, 2, overwrite) File "/Users/johnsonhj/src/Slicer-03/Slicer-build/bin/Python/sitkUtils.py", line 121, in PushToSlicer newNode = CreateNewVolumeNode(NodeName,'vtkMRMLLabelMapVolumeNode', overwrite) File "/Users/johnsonhj/src/Slicer-03/Slicer-build/bin/Python/sitkUtils.py", line 40, in CreateNewVolumeNode checkVolumeNodeType(nodeType) File "/Users/johnsonhj/src/Slicer-03/Slicer-build/bin/Python/sitkUtils.py", line 34, in checkVolumeNodeType raise ValueError('Volume type %s is not valid' % volume_type ) ValueError: Volume type LabelMap is not valid
Steps To Reproduce	Load the default MR data. Start python environment import sitkUtils as su h=su.PullFromSlicer("MRHead") m= h > 128 su.PushLabel(m,"lbl.nii.gz")
Tags	No tags attached.

jcfr 2015-06-17 09:31 administrator ~0013130	Fixed in https://github.com/Slicer/Slicer/pull/291 @Hans: Let me know if it works as expected and I will integrate into the trunk

jcfr 2015-06-19 13:37 administrator ~0013140	Integrated in r24349 See http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=24349

Import 2017-06-07 23:51:09: master fd352e78 2015-06-19 17:08:00 jcfr Details Diff	BUG: sitkUtils: Add 'LabelMap' to list of volume types supported by SimpleITK This commit fixes support for vtkMRMLLabelMapVolumeNode added in r24291 (ENH: Use vtkMRMLLabelMapVolumeNode class for labelmap volumes) Fixes 0004004 git-svn-id: http://svn.slicer.org/Slicer4/trunk@24349 3bd1e089-480b-0410-8dfb-8563597acbee
	mod - Base/Python/sitkUtils.py		Diff File

Date Modified	Username	Field	Change
2015-06-12 19:10	hjmjohnson	New Issue
2015-06-12 19:10	hjmjohnson	Status	new => assigned
2015-06-12 19:10	hjmjohnson	Assigned To	=> jcfr
2015-06-17 09:31	jcfr	Note Added: 0013130
2015-06-17 09:31	jcfr	Status	assigned => resolved
2015-06-17 09:31	jcfr	Fixed in Version	=> Slicer 4.4.1
2015-06-17 09:31	jcfr	Resolution	open => fixed
2015-06-19 13:37	jcfr	Note Added: 0013140
2015-09-09 08:29	jcfr	Fixed in Version	Slicer 4.4.1 => Slicer 4.5.0-1
2015-09-09 08:29	jcfr	Target Version	Slicer 4.4.1 => Slicer 4.5.0-1
2017-06-10 08:51	jcfr	Changeset attached	=> Slicer master fd352e78
2018-03-02 11:06	jcfr	Status	resolved => closed