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IDProjectCategoryView StatusLast Update
0003933Slicer4Core: Usabilitypublic2015-09-09 08:29
ReporterAleks_Dark Assigned Topieper  
PrioritynormalSeverityminorReproducibilityalways
Status closedResolutionduplicate 
Product VersionSlicer 4.4.0 
Target VersionFixed in VersionSlicer 4.5.0-1 
Summary0003933: Launching stable 4.4.0 leads to error messages, but starts
Description

Any ideas what leads to this? (Just downloaded Linux stable version 4.4.0 and untarred + chmodded.)

****:/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64$ ./Slicer

Traceback (most recent call last):
File "<string>", line 7, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/bin/Python/slicer/slicerqt.py", line 1, in <module>
import vtk, qt, ctk
ImportError: No module named vtk
Traceback (most recent call last):
File "<string>", line 7, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/bin/Python/slicer/slicerqt-with-tcl.py", line 42, in <module>
slicer.sliceWidgets = {}
NameError: name 'slicer' is not defined
Number of registered modules: 135
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/AddManyMarkupsFiducialTest.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/AddManyMarkupsFiducialTest.py" !
Fail to instantiate module "AddManyMarkupsFiducialTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/AtlasTests.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/AtlasTests.py" !
Fail to instantiate module "AtlasTests"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Charting.py", line 7, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Charting.py" !
Fail to instantiate module "Charting"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ColorsScalarBarSelfTest.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ColorsScalarBarSelfTest.py" !
Fail to instantiate module "ColorsScalarBarSelfTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/CompareVolumes.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/CompareVolumes.py" !
Fail to instantiate module "CompareVolumes"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOM.py", line 3, in <module>
from main import qt
ImportError: cannot import name qt
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOM.py" !
Fail to instantiate module "DICOM"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOM2FullBrainTractography.py", line 1, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOM2FullBrainTractography.py" !
Fail to instantiate module "DICOM2FullBrainTractography"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOMDiffusionVolumePlugin.py", line 2, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOMDiffusionVolumePlugin.py" !
Fail to instantiate module "DICOMDiffusionVolumePlugin"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOMScalarVolumePlugin.py", line 2, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOMScalarVolumePlugin.py" !
Fail to instantiate module "DICOMScalarVolumePlugin"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOMSlicerDataBundlePlugin.py", line 2, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DICOMSlicerDataBundlePlugin.py" !
Fail to instantiate module "DICOMSlicerDataBundlePlugin"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DataProbe.py", line 3, in <module>
import qt, vtk
ImportError: No module named vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/DataProbe.py" !
Fail to instantiate module "DataProbe"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Editor.py", line 2, in <module>
from main import slicer
ImportError: cannot import name slicer
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Editor.py" !
Fail to instantiate module "Editor"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Endoscopy.py", line 1, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Endoscopy.py" !
Fail to instantiate module "Endoscopy"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ExtensionWizard.py", line 5, in <module>
from main import qt, ctk, slicer
ImportError: cannot import name ctk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ExtensionWizard.py" !
Fail to instantiate module "ExtensionWizard"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/FiberBundleToLabelMap.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/FiberBundleToLabelMap.py" !
Fail to instantiate module "FiberBundleToLabelMap"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/FiducialLayoutSwitchBug1914.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/FiducialLayoutSwitchBug1914.py" !
Fail to instantiate module "FiducialLayoutSwitchBug1914"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/JRC2013Vis.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/JRC2013Vis.py" !
Fail to instantiate module "JRC2013Vis"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/LabelStatistics.py", line 2, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/LabelStatistics.py" !
Fail to instantiate module "LabelStatistics"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/LandmarkRegistration.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/LandmarkRegistration.py" !
Fail to instantiate module "LandmarkRegistration"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MarkupsInCompareViewersSelfTest.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MarkupsInCompareViewersSelfTest.py" !
Fail to instantiate module "MarkupsInCompareViewersSelfTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MarkupsInViewsSelfTest.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MarkupsInViewsSelfTest.py" !
Fail to instantiate module "MarkupsInViewsSelfTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MultiVolumeImporter.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MultiVolumeImporter.py" !
Fail to instantiate module "MultiVolumeImporter"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MultiVolumeImporterPlugin.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/MultiVolumeImporterPlugin.py" !
Fail to instantiate module "MultiVolumeImporterPlugin"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/NeurosurgicalPlanningTutorialMarkupsSelfTest.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/NeurosurgicalPlanningTutorialMarkupsSelfTest.py" !
Fail to instantiate module "NeurosurgicalPlanningTutorialMarkupsSelfTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/PerformanceTests.py", line 1, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/PerformanceTests.py" !
Fail to instantiate module "PerformanceTests"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/RSNA2012ProstateDemo.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/RSNA2012ProstateDemo.py" !
Fail to instantiate module "RSNA2012ProstateDemo"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/RSNAQuantTutorial.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/RSNAQuantTutorial.py" !
Fail to instantiate module "RSNAQuantTutorial"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/RSNAVisTutorial.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/RSNAVisTutorial.py" !
Fail to instantiate module "RSNAVisTutorial"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SampleData.py", line 2, in <module>
from main import slicer
ImportError: cannot import name slicer
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SampleData.py" !
Fail to instantiate module "SampleData"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ScenePerformance.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ScenePerformance.py" !
Fail to instantiate module "ScenePerformance"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SelfTests.py", line 3, in <module>
from main import ctk
ImportError: cannot import name ctk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SelfTests.py" !
Fail to instantiate module "SelfTests"

Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SimpleFilters.py", line 4, in <module>
import sitkUtils
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/bin/Python/sitkUtils.py", line 3, in <module>
import vtk
ImportError: No module named vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SimpleFilters.py" !
Fail to instantiate module "SimpleFilters"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SliceLinkLogic.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SliceLinkLogic.py" !
Fail to instantiate module "SliceLinkLogic"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Slicer4Minute.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/Slicer4Minute.py" !
Fail to instantiate module "Slicer4Minute"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SlicerMRBTest.py", line 4, in <module>
import vtk
ImportError: No module named vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SlicerMRBTest.py" !
Fail to instantiate module "SlicerMRBTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SubjectHierarchyCorePluginsSelfTest.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SubjectHierarchyCorePluginsSelfTest.py" !
Fail to instantiate module "SubjectHierarchyCorePluginsSelfTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SubjectHierarchyGenericSelfTest.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SubjectHierarchyGenericSelfTest.py" !
Fail to instantiate module "SubjectHierarchyGenericSelfTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SurfaceToolbox.py", line 4, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/SurfaceToolbox.py" !
Fail to instantiate module "SurfaceToolbox"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ThresholdThreadingTest.py", line 5, in <module>
import EditorLib
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/EditorLib/init.py", line 7, in <module>
from EditBox import
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/EditorLib/EditBox.py", line 3, in <module>
from EditOptions import

File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/EditorLib/EditOptions.py", line 3, in <module>
from main import ctk
ImportError: cannot import name ctk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ThresholdThreadingTest.py" !
Fail to instantiate module "ThresholdThreadingTest"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/VectorToScalarVolume.py", line 1, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/VectorToScalarVolume.py" !
Fail to instantiate module "VectorToScalarVolume"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ViewControllersSliceInterpolationBug1926.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/ViewControllersSliceInterpolationBug1926.py" !
Fail to instantiate module "ViewControllersSliceInterpolationBug1926"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/VolumeRenderingSceneClose.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/VolumeRenderingSceneClose.py" !
Fail to instantiate module "VolumeRenderingSceneClose"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/SlicerEb440/lib/Slicer-4.4/qt-scripted-modules/XnatSlicer.py", line 39, in <module>
from XnatGlobals import *
File "/media/Software/Slicer/SlicerEb440/lib/Slicer-4.4/qt-scripted-modules/XnatSlicerLib/utils/XnatGlobals.py", line 2, in <module>
from main import vtk, ctk, qt, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/SlicerEb440/lib/Slicer-4.4/qt-scripted-modules/XnatSlicer.py" !
Fail to instantiate module "XnatSlicer"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/fiber_visibility_crash2438.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/fiber_visibility_crash2438.py" !
Fail to instantiate module "fiber_visibility_crash2438"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/labelToggleBug2049.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/labelToggleBug2049.py" !
Fail to instantiate module "labelToggleBug2049"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/sceneImport2428.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/sceneImport2428.py" !
Fail to instantiate module "sceneImport2428"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/slicerCloseCrashBug2590.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/slicerCloseCrashBug2590.py" !
Fail to instantiate module "slicerCloseCrashBug2590"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/test_tractography_display.py", line 3, in <module>
from main import vtk, qt, ctk, slicer
ImportError: cannot import name vtk
setPythonSource - Failed to execute file "/media/Software/Slicer/Slicer-downloaded/Slicer-4.4.0-linux-amd64/lib/Slicer-4.4/qt-scripted-modules/test_tractography_display.py" !
Fail to instantiate module "test_tractography_display"
Number of instantiated modules: 87
Number of loaded modules: 87
Traceback (most recent call last):
File "<string>", line 1, in <module>
NameError: name 'loadSlicerRCFile' is not defined

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Relationships

duplicate of 0003876 closedjcfr All python modules fail after uninstalling an extension 

Activities

pieper

pieper

2015-01-07 03:52

administrator   ~0012842

That is weird - so, when you say it starts, does it run normally?

Also what chmod did you have to do? Typically untarring will correctly set all the permissions so no chmod is needed.

Aleks_Dark

Aleks_Dark

2015-01-07 23:27

reporter   ~0012857

Normally, except that listed modules not included... But Load/Save data, Volumes Rendering and Volumes, and Markups etc are working.

Chmod 777 until the bug is found.

P.S. Same opinion, this is strange. I have also a stable 4.3.1, builds from the source (nightly and 4.4.0) and they all work fine. Thus, system is probably okei, maybe the archive has a problem? Some predefined path which is different in Debian?

P.P.S. Tested shorter filepath also, no effect.

pieper

pieper

2015-01-09 12:19

administrator   ~0012877

I was not able to replicate this issue on my linux machine. Untarring the slicer distribution and running slicer worked fine, not chmod required.

jcfr

jcfr

2015-02-12 00:18

administrator   ~0012908

Which version of debian ? I would be curious to see if we can reproduce the problem within a VM (or docker container ...)

Aleks_Dark

Aleks_Dark

2015-02-16 08:55

reporter   ~0012913

Debian Wheezy, 7.4, amd64

Aleks_Dark

Aleks_Dark

2015-02-16 08:56

reporter   ~0012914

Tested in other Linux systems also, no problems there.... Some sort of Debian issue?

Tiffas

Tiffas

2015-03-24 05:30

reporter   ~0012981

I have the same issue on windows 7

Tiffas

Tiffas

2015-03-24 08:24

reporter   ~0012982

I have the same error, that is to say all the python scrips in lib/Slicer-4.4/qt-scripted-modules that crashed when starting slicer.
I simply launched slicer from an other session on the same computer and it is working perfectly well, I didn't change anything else.

Both sessions have administrator rights.

pieper

pieper

2015-03-24 16:45

administrator   ~0012984

Reminder sent to: jcfr

This looks like some kind of packaging issue. @jcfr can you think of what has changed in the 4.4 timeframe? Probabaly the version of cmake at least.

Tiffas

Tiffas

2015-03-25 01:56

reporter   ~0012985

It is the same problem as in "0003876: All python modules fail after uninstalling an extension". The Slicer-23774.ini file was corrupted, I simply deleted the two lines:

[EnvironmentVariables]
PYTHONPATH=

And it works well now. What is weird is that I have had this bug since the very first time I launched slicer, I mean I didn't uninstall any modules I already had this error.

jcfr

jcfr

2015-03-27 22:01

administrator   ~0012989

Duplicate of 0003876

Issue History

Date Modified Username Field Change
2015-01-07 00:51 Aleks_Dark New Issue
2015-01-07 00:51 Aleks_Dark Status new => assigned
2015-01-07 00:51 Aleks_Dark Assigned To => pieper
2015-01-07 03:52 pieper Note Added: 0012842
2015-01-07 23:27 Aleks_Dark Note Added: 0012857
2015-01-09 12:19 pieper Note Added: 0012877
2015-02-12 00:18 jcfr Note Added: 0012908
2015-02-12 00:19 jcfr Status assigned => feedback
2015-02-16 08:55 Aleks_Dark Note Added: 0012913
2015-02-16 08:56 Aleks_Dark Note Added: 0012914
2015-03-24 05:30 Tiffas Note Added: 0012981
2015-03-24 08:24 Tiffas Note Added: 0012982
2015-03-24 16:45 pieper Note Added: 0012984
2015-03-25 01:56 Tiffas Note Added: 0012985
2015-03-27 22:00 jcfr Relationship added duplicate of 0003876
2015-03-27 22:00 jcfr Duplicate ID 0 => 3876
2015-03-27 22:00 jcfr Status feedback => resolved
2015-03-27 22:00 jcfr Fixed in Version => Slicer 4.4.1
2015-03-27 22:00 jcfr Resolution open => duplicate
2015-03-27 22:00 jcfr Status resolved => closed
2015-03-27 22:01 jcfr Note Added: 0012989
2015-09-09 08:29 jcfr Fixed in Version Slicer 4.4.1 => Slicer 4.5.0-1