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As a workaround, few options:
(1) configure passing -DSlicer_USE_SYSTEM_QT:BOOL=1
(2) in Slicer-build/SlicerLauncherSettings.ini, you could remove the entry in [Paths] and [LibraryPaths] that points to system paths (/usr/lib64, /bin)
The problem is that the find_package(Qt ..) is finding Qt on the system and that the variable Slicer_USE_SYSTEM_QT is not set based on where Qt was found. As a consequence, the launcher setting include system locations .. and when Slicer is started .. it resolves its symbols against the wrong python library. See [1]
[1] https://github.com/Slicer/Slicer/blob/11b11932a6ea65283c55fb512c34a5ed24944a36/CMake/SlicerBlockCTKAppLauncherSettings.cmake#L86-88
The error was
// --------------------------
Traceback (most recent call last):
File "<string>", line 7, in <module>
File "/tmp/Slicer-test/Slicer-build/bin/Python/slicer/slicerqt.py",
line 1, in <module>
import vtk, qt, ctk
File "/tmp/Slicer-test/VTK-build/Wrapping/Python/vtk/init.py",
line 70, in <module>
'vtkVolumeRenderingPython', exc)
File "/tmp/Slicer-test/VTK-build/Wrapping/Python/vtk/helper.py",
line 32, in refine_import_err
raise LinkError, str(exc)
vtk.helper.LinkError:
/tmp/Slicer-test/VTK-build/bin/./libvtkRenderingPythonD.so.5.10: undefined
symbol: PyUnicodeUCS2_DecodeUTF8
Traceback (most recent call last):
File "<string>", line 7, in <module>
File
"/tmp/Slicer-test/Slicer-build/bin/Python/slicer/slicerqt-with-tcl.py",
line 41, in <module>
slicer.sliceWidgets = {}
NameError: name 'slicer' is not defined
/tmp/Slicer-test/VTK-build/bin/./libvtkRenderingPythonD.so.5.10: undefined
symbol: PyUnicodeUCS2_DecodeUTF8
/tmp/Slicer-test/VTK-build/bin/./libvtkRenderingPythonD.so.5.10: undefined
symbol: PyUnicodeUCS2_DecodeUTF8
/tmp/Slicer-test/VTK-build/bin/./libvtkRenderingPythonD.so.5.10: undefined
symbol: PyUnicodeUCS2_DecodeUTF8
// ------------------------------ |
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configure passing -DSlicer_USE_SYSTEM_QT:BOOL=1
Solved the following problem:
dyld: Symbol not found: __cg_jpeg_resync_to_restart
Referenced from: /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
Expected in: /usr/local/lib/libJPEG.dylib
in /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
error: [/Users/shusildangi/Slicer/Slicer-Build/Slicer-build/bin/Slicer.app/Contents/MacOS/./Slicer] exit abnormally - Report the problem. |
