View Issue Details

IDProjectCategoryView StatusLast Update
0003270Slicer4(No Category)public2017-06-07 23:27
Reporterpamin27 Assigned Toalexy  
PrioritynormalSeveritymajorReproducibilityunable to reproduce
Status closedResolutionfixed 
Product VersionSlicer 4.2.0 
Target VersionSlicer 4.3.0Fixed in VersionSlicer 4.3.0 
Summary0003270: Slice comes up as white instead of black.
Description

For the Diffusion MRI Analysis Tutorial, when doing the 3D Visualization Glyphs, the axial slice comes up as a white slice, instead of a black slice.

See attached screen shots of the bug.

Additional Information

We are a Windows 7 - 32 bit operating system.

TagsNo tags attached.

Activities

2013-08-02 07:04

 

Bug for Glyphs.docx (940,745 bytes)
pieper

pieper

2013-08-02 07:17

administrator   ~0009353

This is almost certainly another memory issue. Can you save the error log window contents to a file and attach it here?

2013-08-02 08:07

 

pamin27

pamin27

2013-08-02 08:07

reporter   ~0009356

This problems also occurs on a Mac.
Screenshot attached.

2013-08-02 08:25

 

Error Log for Bug (Diffusion MRI Analysis Tutorial).docx (121,808 bytes)
pamin27

pamin27

2013-08-02 08:25

reporter   ~0009359

Attached document contains the screen shot of the Error Log.

pieper

pieper

2013-08-02 12:20

administrator   ~0009369

For the error log, here's what you need to do:

1) click on an entry in the top part of the error log window
2) type Control-A to select all entries
3) click in the bottom part of the error log window
4) type Control-A to select all text
5) paste the text into a text file and attach the text file to this bug report (please use .txt files, not .docx)

In addition: Please provide a step-by-step description of how to reproduce this issue, ideally starting from the SampleData DTIBrain. If it's not possible to reproduce with the SampleData DTIBrain please note that and include a pointer to the data you used.

(The idea is to make this bug report self-contained so that a developer can recreate the steps needed to debug).

2013-08-02 12:35

 

Step by Step replication of Bug .docx (18,706 bytes)

2013-08-02 12:36

 

Error Log Bug.txt (13,693 bytes)
Error Log Bug.txt (13,693 bytes)
pamin27

pamin27

2013-08-02 12:38

reporter   ~0009372

I have attached the error log in a .txt format and also I have attached how to replicate the issue.

-Start a fresh slicer
-Download the DTIBrain from the Sample Data module
-Go to the Volumes module
-Go to the Display Tab
-Change Scalar Mode to FractionalAnisotrophy
-Scroll down the module panel
-Check off the option for Red Slice Visibility
-Set the Color by Scalar parameter to ‘ColorOrientation’
-Set the Glyph Type to ‘Lines’
-Position your mouse over the pin icon and deselect the link icon, then select the eye icon to display the axial slice in the 3D viewer

pieper

pieper

2013-08-02 15:09

administrator   ~0009373

Very nice, thanks - I can replicate this now.

pieper

pieper

2013-08-02 15:14

administrator   ~0009374

This is fixed in r22257

jcfr

jcfr

2014-03-06 05:21

administrator   ~0011154

Closing resolved issues that have not been updated in more than 3 months

Related Changesets

Slicer: 2145-support-for-installing-extension-from-file 0ed83d08

2013-08-02 19:14:12

pieper

Details Diff
BUG: 0003270 Slice Model is white in FA mode

Color scalar image modes were being treated differently with respect
to the image pipeline, meaning that the resulting texture image data was
5 component with a duplicated alpha channel (so it was RGBAA not RGBA).
Putting adding the ExtractComponents instance to the pipeline
took care of this.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22257 3bd1e089-480b-0410-8dfb-8563597acbee
mod - Libs/MRML/Core/vtkMRMLDiffusionTensorVolumeDisplayNode.cxx Diff File

Issue History

Date Modified Username Field Change
2013-08-02 07:04 pamin27 New Issue
2013-08-02 07:04 pamin27 Status new => assigned
2013-08-02 07:04 pamin27 Assigned To => alexy
2013-08-02 07:04 pamin27 File Added: Bug for Glyphs.docx
2013-08-02 07:17 pieper Note Added: 0009353
2013-08-02 08:07 pamin27 File Added: Screen Shot 08-02-2013 (Slicer Bug).png
2013-08-02 08:07 pamin27 Note Added: 0009356
2013-08-02 08:25 pamin27 File Added: Error Log for Bug (Diffusion MRI Analysis Tutorial).docx
2013-08-02 08:25 pamin27 Note Added: 0009359
2013-08-02 12:20 pieper Note Added: 0009369
2013-08-02 12:35 pamin27 File Added: Step by Step replication of Bug .docx
2013-08-02 12:36 pamin27 File Added: Error Log Bug.txt
2013-08-02 12:38 pamin27 Note Added: 0009372
2013-08-02 15:09 pieper Note Added: 0009373
2013-08-02 15:14 pieper Note Added: 0009374
2013-08-02 15:14 pieper Status assigned => resolved
2013-08-02 15:14 pieper Fixed in Version => Slicer 4.3.0
2013-08-02 15:14 pieper Resolution open => fixed
2013-08-02 15:15 pieper Target Version => Slicer 4.3.0
2014-03-06 05:21 jcfr Note Added: 0011154
2014-03-06 05:23 jcfr Status resolved => closed
2016-02-29 13:57 jcfr Category Module DiffusionTensorScalarMeasurements => (No Category)
2017-06-07 23:27 pieper Changeset attached => Slicer 2145-support-for-installing-extension-from-file 0ed83d08