0003083: DWIConvert does not support non-DWI volumes - MantisBT

ID	Project	Category	View Status	Date Submitted	Last Update

0003083	Slicer4	Module DicomToNrrdConverter	public	2013-04-23 08:45	2014-03-06 06:15

Reporter	inorton	Assigned To	hjmjohnson
Priority	normal	Severity	minor	Reproducibility	always
Status	closed	Resolution	fixed
Product Version
Target Version	Slicer 4.4.0	Fixed in Version	Slicer 4.4.0

Summary	0003083: DWIConvert does not support non-DWI volumes
Description	DicomToNrrd supported non-DWI volumes, which was useful for scripted conversions. DWIConvert raises an exception when called against non-DWI volumes. Is it possible to restore the functionality?
Additional Information	"C:/Program Files/Slicer 4.2.0-2013-04-12/lib/Slicer-4.2/cli-modules/DWIConvert.exe" --inputDicomDirectory 2013C\PreOp\201303_ser7_AXFSEXLT2 --outputVolume test.nrrd =================== numberOfSlicesPerVolume:126 Dicom images are ordered in a volume interleaving way. ImageOrientationPatient (0020:0037): LPS Orientation Matrix 1 -0 -0 -0 1 -0 0 0 1 SpacingMatrix 0.46875 0 0 0 0.46875 0 0 0 1.4 NRRDSpaceDirection 0.46875 0 0 0 0.46875 0 0 0 1.4 Slice 0: -119.766 -155.107 -52.9637 Slice 0: -119.766 -155.107 -51.5637 Slice order is IS Row: 0.46875, 0, 0 Col: 0, 0.46875, 0 Sli: 0, 0, 1.4 Number of Slices: 126 Number of Volume: 1 Number of Slices in each volume: 126 B-value: 8.42227e+008; diffusion direction: -1.3980432860951318e-76, -1.3980432860951318e-76, 1.3980432860951318e-76 Number of usable volumes: 1 Exception thrown while writing ./test.nrrd itk::ImageFileWriterException (0000000000B2A480) Location: "unknown" File: c:\d\n\slicer-1-build\itkv4\modules\io\imagebase\include\itkImageFileWriter.hxx Line: 151 Description: Could not create IO object for file ./test.nrrd Tried to create one of the following: You probably failed to set a file suffix, or set the suffix to an unsupported type.
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hjmjohnson 2013-07-05 06:52 developer ~0008860	An optional flag was added --fMRI Output a NRRD file, but no Gradients and this version was incorporated into Slicer during the summer projects week.

jcfr 2014-03-06 05:18 administrator ~0011098	Closing resolved issues that have not been updated in more than 3 months

Date Modified	Username	Field	Change
2013-04-23 08:45	inorton	New Issue
2013-04-29 04:26	kikinis	Status	new => assigned
2013-04-29 04:26	kikinis	Assigned To	=> hjmjohnson
2013-07-05 06:52	hjmjohnson	Note Added: 0008860
2013-07-05 06:52	hjmjohnson	Status	assigned => resolved
2013-07-05 06:52	hjmjohnson	Resolution	open => fixed
2014-03-06 05:18	jcfr	Note Added: 0011098
2014-03-06 05:20	jcfr	Status	resolved => closed
2014-03-06 05:54	jcfr	Fixed in Version	=> Slicer 4.4.0
2014-03-06 06:15	jcfr	Target Version	=> Slicer 4.4.0