0003007: Models are not listed in the models module

ID	Project	Category	View Status	Date Submitted	Last Update

0003007	Slicer4	Core: GUI	public	2013-03-12 08:54	2013-07-26 19:05

Reporter	kikinis	Assigned To	nicole
Priority	urgent	Severity	minor	Reproducibility	always
Status	closed	Resolution	fixed
Platform	Mac	OS	OS X	OS Version	10.8.2
Product Version	Slicer 4.2.2-1
Target Version	Slicer 4.3.0	Fixed in Version	Slicer 4.3.0

Summary	0003007: Models are not listed in the models module
Description	load the brain atlas mrb change into the models module no models or hierarchy are listed
Tags	No tags attached.

2013-03-12 08:54	Screen Shot 2013-03-12 at 12.51.41 PM.png (491,193 bytes) Screen Shot 2013-03-12 at 12.51.41 PM.png (491,193 bytes)

pieper 2013-03-12 10:41 administrator ~0008111	Below is the output of running the self test on the brain atlas. I can confirm that at the end there is no hierarchy displayed in the Models module. It could be related to the error messages for some missing models: Model_1035_left_limen_insulae.vtk' not found. Model_2035_right_limen_insulae.vtk' not found. Model_19_aqueduct.vtk' not found. while the test was running it seemed as if the hierarchies and scene views were working as expected (although I probably wouldn't have noticed the missing objects). Here's the full output: Number of registered modules: 53 Register compression libraries Number of instantiated modules: 53 Mouse Mode ToolBar: no selection node Mouse Mode ToolBar: no interaction node 2013-03-12 14:12:10.441 Slicer[3343:a903] invalid drawable 2013-03-12 14:12:10.467 Slicer[3343:a903] invalid drawable When loading module "CropVolume" , the dependency "ResampleScalarVectorDWIVolume" failed to be loaded. When loading module "RSNA2012Quant" , the dependency "ChangeTracker" failed to be loaded. Number of loaded modules: 51 Show module (name): "Welcome" Loading Slicer RC file [/Users/pieper/.slicerrc.py] SlicerRC - Install custom keyboard shortcuts SlicerRC - '0' -> 'loadSlicerRCFile' SlicerRC - '1' -> 'LabelStatistics' SlicerRC - '2' -> 'endoscopy' SlicerRC - '3' -> 'editor' SlicerRC - '4' -> 'fileScan' SlicerRC - '5' -> 'performance' SlicerRC - '6' -> 'slicr_setup' SlicerRC - '7' -> 'DICOM' SlicerRC - 'p' -> 'grabPythonToClipboard' SlicerRC - 'c' -> 'grabMainToClipboard' SlicerRC - '0' -> 'loadSlicerRCFile' SlicerRC - '1' -> 'LabelStatistics' SlicerRC - '2' -> 'endoscopy' SlicerRC - '3' -> 'editor' SlicerRC - '4' -> 'fileScan' SlicerRC - '5' -> 'performance' SlicerRC - '6' -> 'slicr_setup' SlicerRC - '7' -> 'DICOM' SlicerRC - 'p' -> 'grabPythonToClipboard' SlicerRC - 'c' -> 'grabMainToClipboard' Slicer RC file loaded [12/03/2013 18:12:13] Show module (name): "SampleData" "Volume" Reader has successfully read the file "/var/folders/27/6vsc8_690hq0r_chfm32fhwr0000gn/T/RemoteIO/MR-head.nrrd" Show module (name): "AtlasTests" Running Brain Atlas Test Starting the test Requesting download BrainAtlas2012.mrb from http://slicer.kitware.com/midas3/download?items=10937... Loading BrainAtlas2012.mrb... unpacking to /var/folders/27/6vsc8_690hq0r_chfm32fhwr0000gn/T/__BundleLoadTemp2013-03-12_14+28+04.479 loaded /var/folders/27/6vsc8_690hq0r_chfm32fhwr0000gn/T/__BundleLoadTemp2013-03-12_14+28+04.479 "MRB Slicer Data Bundle" Reader has successfully read the file "/var/folders/27/6vsc8_690hq0r_chfm32fhwr0000gn/T/BrainAtlas2012.mrb" Finished with download and loading Show module (name): "Models" Entered Models module Skipping model hierarchy with no display node Brain Atlas Manipulating model hierarchy Head and Neck Muscles (1/76) Model hierarchy Head and Neck Muscles: expanded = false Model hierarchy Head and Neck Muscles: color = red Model hierarchy Head and Neck Muscles: visibility = off Model hierarchy Head and Neck Muscles: expanded = true Manipulating model hierarchy Muscles of Mastication (2/76) Model hierarchy Muscles of Mastication: expanded = false Model hierarchy Muscles of Mastication: color = red Model hierarchy Muscles of Mastication: visibility = off Model hierarchy Muscles of Mastication: expanded = true Manipulating model hierarchy Extraocular Muscles (3/76) Model hierarchy Extraocular Muscles: expanded = false Model hierarchy Extraocular Muscles: color = red Model hierarchy Extraocular Muscles: visibility = off Model hierarchy Extraocular Muscles: expanded = true Manipulating model hierarchy Muscles of Soft Palate (4/76) Model hierarchy Muscles of Soft Palate: expanded = false Model hierarchy Muscles of Soft Palate: color = red Model hierarchy Muscles of Soft Palate: visibility = off Model hierarchy Muscles of Soft Palate: expanded = true Manipulating model hierarchy Muscles of the Neck (5/76) Model hierarchy Muscles of the Neck: expanded = false Model hierarchy Muscles of the Neck: color = red Model hierarchy Muscles of the Neck: visibility = off Model hierarchy Muscles of the Neck: expanded = true Manipulating model hierarchy Muscles of the Face (6/76) Model hierarchy Muscles of the Face: expanded = false Model hierarchy Muscles of the Face: color = red Model hierarchy Muscles of the Face: visibility = off Model hierarchy Muscles of the Face: expanded = true Manipulating model hierarchy Muscles of the Tongue (7/76) Model hierarchy Muscles of the Tongue: expanded = false Model hierarchy Muscles of the Tongue: color = red Model hierarchy Muscles of the Tongue: visibility = off Model hierarchy Muscles of the Tongue: expanded = true Manipulating model hierarchy Muscles of Pharynx (8/76) Model hierarchy Muscles of Pharynx: expanded = false Model hierarchy Muscles of Pharynx: color = red Model hierarchy Muscles of Pharynx: visibility = off Model hierarchy Muscles of Pharynx: expanded = true Manipulating model hierarchy Eyeballs (9/76) Model hierarchy Eyeballs: expanded = false Model hierarchy Eyeballs: color = red Model hierarchy Eyeballs: visibility = off Model hierarchy Eyeballs: expanded = true Manipulating model hierarchy Brain (10/76) Model hierarchy Brain: expanded = false Model hierarchy Brain: color = red Model hierarchy Brain: visibility = off Model hierarchy Brain: expanded = true Manipulating model hierarchy rhombencephalon (11/76) Model hierarchy rhombencephalon: expanded = false Model hierarchy rhombencephalon: color = red Model hierarchy rhombencephalon: visibility = off Model hierarchy rhombencephalon: expanded = true Manipulating model hierarchy cerebellum (12/76) Model hierarchy cerebellum: expanded = false Model hierarchy cerebellum: color = red Model hierarchy cerebellum: visibility = off Model hierarchy cerebellum: expanded = true Manipulating model hierarchy midbrain (13/76) Model hierarchy midbrain: expanded = false Model hierarchy midbrain: color = red Model hierarchy midbrain: visibility = off Model hierarchy midbrain: expanded = true Manipulating model hierarchy prosencephalon (14/76) Model hierarchy prosencephalon: expanded = false Model hierarchy prosencephalon: color = red Model hierarchy prosencephalon: visibility = off Model hierarchy prosencephalon: expanded = true Manipulating model hierarchy telencephalon (15/76) Model hierarchy telencephalon: expanded = false Model hierarchy telencephalon: color = red Model hierarchy telencephalon: visibility = off Model hierarchy telencephalon: expanded = true Manipulating model hierarchy diencephalon (16/76) Model hierarchy diencephalon: expanded = false Model hierarchy diencephalon: color = red Model hierarchy diencephalon: visibility = off Model hierarchy diencephalon: expanded = true Manipulating model hierarchy left side of midbrain (17/76) Model hierarchy left side of midbrain: expanded = false Model hierarchy left side of midbrain: color = red Model hierarchy left side of midbrain: visibility = off Model hierarchy left side of midbrain: expanded = true Manipulating model hierarchy right side of midbrain (18/76) Model hierarchy right side of midbrain: expanded = false Model hierarchy right side of midbrain: color = red Model hierarchy right side of midbrain: visibility = off Model hierarchy right side of midbrain: expanded = true Manipulating model hierarchy left cerebral hemisphere (19/76) Model hierarchy left cerebral hemisphere: expanded = false Model hierarchy left cerebral hemisphere: color = red Model hierarchy left cerebral hemisphere: visibility = off Model hierarchy left cerebral hemisphere: expanded = true Manipulating model hierarchy septum of telencephalon (20/76) Model hierarchy septum of telencephalon: expanded = false Model hierarchy septum of telencephalon: color = red Model hierarchy septum of telencephalon: visibility = off Model hierarchy septum of telencephalon: expanded = true Manipulating model hierarchy right cerebral hemisphere (21/76) Model hierarchy right cerebral hemisphere: expanded = false Model hierarchy right cerebral hemisphere: color = red Model hierarchy right cerebral hemisphere: visibility = off Model hierarchy right cerebral hemisphere: expanded = true Manipulating model hierarchy hypothalamus (22/76) Model hierarchy hypothalamus: expanded = false Model hierarchy hypothalamus: color = red Model hierarchy hypothalamus: visibility = off Model hierarchy hypothalamus: expanded = true Manipulating model hierarchy thalamus (23/76) Model hierarchy thalamus: expanded = false Model hierarchy thalamus: color = red Model hierarchy thalamus: visibility = off Model hierarchy thalamus: expanded = true Manipulating model hierarchy epithalamus (24/76) Model hierarchy epithalamus: expanded = false Model hierarchy epithalamus: color = red Model hierarchy epithalamus: visibility = off Model hierarchy epithalamus: expanded = true Manipulating model hierarchy left hemisphere of cerebellum (25/76) Model hierarchy left hemisphere of cerebellum: expanded = false Model hierarchy left hemisphere of cerebellum: color = red Model hierarchy left hemisphere of cerebellum: visibility = off Model hierarchy left hemisphere of cerebellum: expanded = true Manipulating model hierarchy right hemisphere of cerebellum (26/76) Model hierarchy right hemisphere of cerebellum: expanded = false Model hierarchy right hemisphere of cerebellum: color = red Model hierarchy right hemisphere of cerebellum: visibility = off Model hierarchy right hemisphere of cerebellum: expanded = true Manipulating model hierarchy metencephalon (27/76) Model hierarchy metencephalon: expanded = false Model hierarchy metencephalon: color = red Model hierarchy metencephalon: visibility = off Model hierarchy metencephalon: expanded = true Manipulating model hierarchy vermis (28/76) Model hierarchy vermis: expanded = false Model hierarchy vermis: color = red Model hierarchy vermis: visibility = off Model hierarchy vermis: expanded = true Manipulating model hierarchy medial hemispheric zone (29/76) Model hierarchy medial hemispheric zone: expanded = false Model hierarchy medial hemispheric zone: color = red Model hierarchy medial hemispheric zone: visibility = off Model hierarchy medial hemispheric zone: expanded = true Manipulating model hierarchy lateral hemispheric zone 1 (30/76) Model hierarchy lateral hemispheric zone 1: expanded = false Model hierarchy lateral hemispheric zone 1: color = red Model hierarchy lateral hemispheric zone 1: visibility = off Model hierarchy lateral hemispheric zone 1: expanded = true Manipulating model hierarchy medial hemispheric zone (31/76) Model hierarchy medial hemispheric zone: expanded = false Model hierarchy medial hemispheric zone: color = red Model hierarchy medial hemispheric zone: visibility = off Model hierarchy medial hemispheric zone: expanded = true Manipulating model hierarchy lateral hemispheric zone 1 (32/76) Model hierarchy lateral hemispheric zone 1: expanded = false Model hierarchy lateral hemispheric zone 1: color = red Model hierarchy lateral hemispheric zone 1: visibility = off Model hierarchy lateral hemispheric zone 1: expanded = true Manipulating model hierarchy vermis (33/76) Model hierarchy vermis: expanded = false Model hierarchy vermis: color = red Model hierarchy vermis: visibility = off Model hierarchy vermis: expanded = true Manipulating model hierarchy left temporal lobe (34/76) Model hierarchy left temporal lobe: expanded = false Model hierarchy left temporal lobe: color = red Model hierarchy left temporal lobe: visibility = off Model hierarchy left temporal lobe: expanded = true Manipulating model hierarchy subcortex of left cerebral hemisphere (35/76) Model hierarchy subcortex of left cerebral hemisphere: expanded = false Model hierarchy subcortex of left cerebral hemisphere: color = red Model hierarchy subcortex of left cerebral hemisphere: visibility = off Model hierarchy subcortex of left cerebral hemisphere: expanded = true Manipulating model hierarchy striatum of left cerebral hemisphere (36/76) Model hierarchy striatum of left cerebral hemisphere: expanded = false Model hierarchy striatum of left cerebral hemisphere: color = red Model hierarchy striatum of left cerebral hemisphere: visibility = off Model hierarchy striatum of left cerebral hemisphere: expanded = true Manipulating model hierarchy left lentiform nucleus (37/76) Model hierarchy left lentiform nucleus: expanded = false Model hierarchy left lentiform nucleus: color = red Model hierarchy left lentiform nucleus: visibility = off Model hierarchy left lentiform nucleus: expanded = true Manipulating model hierarchy left globus pallidus (38/76) Model hierarchy left globus pallidus: expanded = false Model hierarchy left globus pallidus: color = red Model hierarchy left globus pallidus: visibility = off Model hierarchy left globus pallidus: expanded = true Manipulating model hierarchy left lateral ventricle (39/76) Model hierarchy left lateral ventricle: expanded = false Model hierarchy left lateral ventricle: color = red Model hierarchy left lateral ventricle: visibility = off Model hierarchy left lateral ventricle: expanded = true Manipulating model hierarchy left frontal lobe (40/76) Model hierarchy left frontal lobe: expanded = false Model hierarchy left frontal lobe: color = red Model hierarchy left frontal lobe: visibility = off Model hierarchy left frontal lobe: expanded = true Manipulating model hierarchy left middle frontal gyrus (41/76) Model hierarchy left middle frontal gyrus: expanded = false Model hierarchy left middle frontal gyrus: color = red Model hierarchy left middle frontal gyrus: visibility = off Model hierarchy left middle frontal gyrus: expanded = true Manipulating model hierarchy left inferior frontal gyrus (42/76) Model hierarchy left inferior frontal gyrus: expanded = false Model hierarchy left inferior frontal gyrus: color = red Model hierarchy left inferior frontal gyrus: visibility = off Model hierarchy left inferior frontal gyrus: expanded = true Manipulating model hierarchy left insula (43/76) Model hierarchy left insula: expanded = false Model hierarchy left insula: color = red Model hierarchy left insula: visibility = off Model hierarchy left insula: expanded = true Manipulating model hierarchy left parietal lobe (44/76) Model hierarchy left parietal lobe: expanded = false Model hierarchy left parietal lobe: color = red Model hierarchy left parietal lobe: visibility = off Model hierarchy left parietal lobe: expanded = true Manipulating model hierarchy left inferior parietal lobule (45/76) Model hierarchy left inferior parietal lobule: expanded = false Model hierarchy left inferior parietal lobule: color = red Model hierarchy left inferior parietal lobule: visibility = off Model hierarchy left inferior parietal lobule: expanded = true Manipulating model hierarchy left limbic lobe (46/76) Model hierarchy left limbic lobe: expanded = false Model hierarchy left limbic lobe: color = red Model hierarchy left limbic lobe: visibility = off Model hierarchy left limbic lobe: expanded = true Manipulating model hierarchy left cingulate gyrus (47/76) Model hierarchy left cingulate gyrus: expanded = false Model hierarchy left cingulate gyrus: color = red Model hierarchy left cingulate gyrus: visibility = off Model hierarchy left cingulate gyrus: expanded = true Manipulating model hierarchy left occipital lobe (48/76) Model hierarchy left occipital lobe: expanded = false Model hierarchy left occipital lobe: color = red Model hierarchy left occipital lobe: visibility = off Model hierarchy left occipital lobe: expanded = true Manipulating model hierarchy right temporal lobe (49/76) Model hierarchy right temporal lobe: expanded = false Model hierarchy right temporal lobe: color = red Model hierarchy right temporal lobe: visibility = off Model hierarchy right temporal lobe: expanded = true Manipulating model hierarchy right frontal lobe (50/76) Model hierarchy right frontal lobe: expanded = false Model hierarchy right frontal lobe: color = red Model hierarchy right frontal lobe: visibility = off Model hierarchy right frontal lobe: expanded = true Manipulating model hierarchy right occipital lobe (51/76) Model hierarchy right occipital lobe: expanded = false Model hierarchy right occipital lobe: color = red Model hierarchy right occipital lobe: visibility = off Model hierarchy right occipital lobe: expanded = true Manipulating model hierarchy right parietal lobe (52/76) Model hierarchy right parietal lobe: expanded = false Model hierarchy right parietal lobe: color = red Model hierarchy right parietal lobe: visibility = off Model hierarchy right parietal lobe: expanded = true Manipulating model hierarchy right limbic lobe (53/76) Model hierarchy right limbic lobe: expanded = false Model hierarchy right limbic lobe: color = red Model hierarchy right limbic lobe: visibility = off Model hierarchy right limbic lobe: expanded = true Manipulating model hierarchy right insula (54/76) Model hierarchy right insula: expanded = false Model hierarchy right insula: color = red Model hierarchy right insula: visibility = off Model hierarchy right insula: expanded = true Manipulating model hierarchy right lateral ventricle (55/76) Model hierarchy right lateral ventricle: expanded = false Model hierarchy right lateral ventricle: color = red Model hierarchy right lateral ventricle: visibility = off Model hierarchy right lateral ventricle: expanded = true Manipulating model hierarchy subcortex of right cerebral hemisphere (56/76) Model hierarchy subcortex of right cerebral hemisphere: expanded = false Model hierarchy subcortex of right cerebral hemisphere: color = red Model hierarchy subcortex of right cerebral hemisphere: visibility = off Model hierarchy subcortex of right cerebral hemisphere: expanded = true Manipulating model hierarchy right middle frontal gyrus (57/76) Model hierarchy right middle frontal gyrus: expanded = false Model hierarchy right middle frontal gyrus: color = red Model hierarchy right middle frontal gyrus: visibility = off Model hierarchy right middle frontal gyrus: expanded = true Manipulating model hierarchy right inferior frontal gyrus (58/76) Model hierarchy right inferior frontal gyrus: expanded = false Model hierarchy right inferior frontal gyrus: color = red Model hierarchy right inferior frontal gyrus: visibility = off Model hierarchy right inferior frontal gyrus: expanded = true Manipulating model hierarchy right inferior parietal lobule (59/76) Model hierarchy right inferior parietal lobule: expanded = false Model hierarchy right inferior parietal lobule: color = red Model hierarchy right inferior parietal lobule: visibility = off Model hierarchy right inferior parietal lobule: expanded = true Manipulating model hierarchy right cingulate gyrus (60/76) Model hierarchy right cingulate gyrus: expanded = false Model hierarchy right cingulate gyrus: color = red Model hierarchy right cingulate gyrus: visibility = off Model hierarchy right cingulate gyrus: expanded = true Manipulating model hierarchy neurohypophysis (61/76) Model hierarchy neurohypophysis: expanded = false Model hierarchy neurohypophysis: color = red Model hierarchy neurohypophysis: visibility = off Model hierarchy neurohypophysis: expanded = true Manipulating model hierarchy left anterior cingulate gyrus (62/76) Model hierarchy left anterior cingulate gyrus: expanded = false Model hierarchy left anterior cingulate gyrus: color = red Model hierarchy left anterior cingulate gyrus: visibility = off Model hierarchy left anterior cingulate gyrus: expanded = true Manipulating model hierarchy right anterior cingulate gyrus (63/76) Model hierarchy right anterior cingulate gyrus: expanded = false Model hierarchy right anterior cingulate gyrus: color = red Model hierarchy right anterior cingulate gyrus: visibility = off Model hierarchy right anterior cingulate gyrus: expanded = true Manipulating model hierarchy striatum of right cerebral hemisphere (64/76) Model hierarchy striatum of right cerebral hemisphere: expanded = false Model hierarchy striatum of right cerebral hemisphere: color = red Model hierarchy striatum of right cerebral hemisphere: visibility = off Model hierarchy striatum of right cerebral hemisphere: expanded = true Manipulating model hierarchy right lentiform nucleus (65/76) Model hierarchy right lentiform nucleus: expanded = false Model hierarchy right lentiform nucleus: color = red Model hierarchy right lentiform nucleus: visibility = off Model hierarchy right lentiform nucleus: expanded = true Manipulating model hierarchy right globus pallidus (66/76) Model hierarchy right globus pallidus: expanded = false Model hierarchy right globus pallidus: color = red Model hierarchy right globus pallidus: visibility = off Model hierarchy right globus pallidus: expanded = true Manipulating model hierarchy left metathalamus (67/76) Model hierarchy left metathalamus: expanded = false Model hierarchy left metathalamus: color = red Model hierarchy left metathalamus: visibility = off Model hierarchy left metathalamus: expanded = true Manipulating model hierarchy right metathalamus (68/76) Model hierarchy right metathalamus: expanded = false Model hierarchy right metathalamus: color = red Model hierarchy right metathalamus: visibility = off Model hierarchy right metathalamus: expanded = true Manipulating model hierarchy left thalamus (69/76) Model hierarchy left thalamus: expanded = false Model hierarchy left thalamus: color = red Model hierarchy left thalamus: visibility = off Model hierarchy left thalamus: expanded = true Manipulating model hierarchy right thalamus (70/76) Model hierarchy right thalamus: expanded = false Model hierarchy right thalamus: color = red Model hierarchy right thalamus: visibility = off Model hierarchy right thalamus: expanded = true Manipulating model hierarchy ventral nuclear group (71/76) Model hierarchy ventral nuclear group: expanded = false Model hierarchy ventral nuclear group: color = red Model hierarchy ventral nuclear group: visibility = off Model hierarchy ventral nuclear group: expanded = true Manipulating model hierarchy ventral nuclear group (72/76) Model hierarchy ventral nuclear group: expanded = false Model hierarchy ventral nuclear group: color = red Model hierarchy ventral nuclear group: visibility = off Model hierarchy ventral nuclear group: expanded = true Manipulating model hierarchy lateral nuclear group (73/76) Model hierarchy lateral nuclear group: expanded = false Model hierarchy lateral nuclear group: color = red Model hierarchy lateral nuclear group: visibility = off Model hierarchy lateral nuclear group: expanded = true Manipulating model hierarchy lateral nuclear group (74/76) Model hierarchy lateral nuclear group: expanded = false Model hierarchy lateral nuclear group: color = red Model hierarchy lateral nuclear group: visibility = off Model hierarchy lateral nuclear group: expanded = true Manipulating model hierarchy lateral hemispheric zone 2 (75/76) Model hierarchy lateral hemispheric zone 2: expanded = false Model hierarchy lateral hemispheric zone 2: color = red Model hierarchy lateral hemispheric zone 2: visibility = off Model hierarchy lateral hemispheric zone 2: expanded = true Manipulating model hierarchy lateral hemispheric zone 2 (76/76) Model hierarchy lateral hemispheric zone 2: expanded = false Model hierarchy lateral hemispheric zone 2: color = red Model hierarchy lateral hemispheric zone 2: visibility = off Model hierarchy lateral hemispheric zone 2: expanded = true Show module (name): "SceneViews" Entered Scene Views module Restoring scene Ventricular System (1/12) Restoring scene Head and Neck Muscles (2/12) Restoring scene Left Cerebral Hemisphere (3/12) Restoring scene Visual System (4/12) ERROR: In /Users/pieper/slicer4/latest/Slicer/Libs/MRML/Core/vtkMRMLScene.cxx, line 3025 vtkMRMLScene (0x7fcced604820): GetReferencingNodes: null node or referenced node ERROR: In /Users/pieper/slicer4/latest/Slicer/Libs/MRML/Core/vtkMRMLScene.cxx, line 3025 vtkMRMLScene (0x7fcced604820): GetReferencingNodes: null node or referenced node Restoring scene Diencephalon (5/12) Restoring scene Motor System (6/12) Restoring scene Cerebellum (7/12) Restoring scene Lobes of Left Cerebral Cortex (8/12) Restoring scene Limbic System (9/12) Restoring scene Brainstem (10/12) Restoring scene General View (11/12) ERROR: In /Users/pieper/slicer4/latest/Slicer/Libs/MRML/Core/vtkMRMLModelStorageNode.cxx, line 114 vtkMRMLModelStorageNode (0x7fcce627b720): ReadDataInternal: model file '/var/folders/27/6vsc8_690hq0r_chfm32fhwr0000gn/T/__BundleLoadTemp2013-03-12_14+28+04.479/BrainAtlas2012/Data/Model_1035_left_limen_insulae.vtk' not found. ERROR: In /Users/pieper/slicer4/latest/Slicer/Libs/MRML/Core/vtkMRMLModelStorageNode.cxx, line 114 vtkMRMLModelStorageNode (0x7fcce6282320): ReadDataInternal: model file '/var/folders/27/6vsc8_690hq0r_chfm32fhwr0000gn/T/__BundleLoadTemp2013-03-12_14+28+04.479/BrainAtlas2012/Data/Model_2035_right_limen_insulae.vtk' not found. ERROR: In /Users/pieper/slicer4/latest/Slicer/Libs/MRML/Core/vtkMRMLModelStorageNode.cxx, line 114 vtkMRMLModelStorageNode (0x7fcce5975bd0): ReadDataInternal: model file '/var/folders/27/6vsc8_690hq0r_chfm32fhwr0000gn/T/__BundleLoadTemp2013-03-12_14+28+04.479/BrainAtlas2012/Data/Model_19_aqueduct.vtk' not found. Restoring scene Slicer Data Bundle Scene View (12/12) Test passed! Show module (name): "Models"

jcfr 2013-03-12 11:00 administrator ~0008113	Re-assigned to Nicole / Steve. Are the files available within the MRB ?

nicole 2013-03-13 06:17 administrator ~0008116	This is a known issue with two of the atlas mrb files that appeared after the changes to the tree view wrt the hide from editors flag. The .mrml file has to be updated to toggle the flags of the models that are to be shown.

kikinis 2013-03-13 10:14 developer ~0008117	Is the MRB that is available for downloading fixed?

sankhesh 2013-03-13 11:19 developer ~0008118	Just wanted to make a note here that loading this data, switching to the Models module, closing the scene and quitting Slicer causes some memory leaks: vtkDebugLeaks has detected LEAKS! Class "vtkSynchronizedTemplatesCutter3D" has 4 instances still around. Class "vtkTransformPolyDataFilter" has 4 instances still around. Class "vtkInformationVector" has 84 instances still around. Class "vtkMatrix4x4" has 8 instances still around. Class "vtkCoordinate" has 8 instances still around. Class "vtkPlane" has 4 instances still around. Class "vtkInformation" has 100 instances still around. Class "vtkSynchronizedTemplates3D" has 4 instances still around. Class "vtkActor2D" has 4 instances still around. Class "vtkRectilinearSynchronizedTemplates" has 4 instances still around. Class "vtkDoubleArray" has 20 instances still around. Class "vtkAlgorithmOutput" has 4 instances still around. Class "vtkInformationIntegerValue" has 72 instances still around. Class "vtkOpenGLPolyDataMapper2D" has 4 instances still around. Class "vtkGridSynchronizedTemplates3D" has 4 instances still around. Class "vtkCutter" has 4 instances still around. Class "vtkInformationExecutivePortVectorValue" has 4 instances still around. Class "vtkContourValues" has 20 instances still around. Class "vtkTransform" has 4 instances still around. Class "vtkStreamingDemandDrivenPipeline" has 8 instances still around. Class "vtkTimerLog" has 4 instances still around. Class "vtkInformationExecutivePortValue" has 4 instances still around. These leaks could be related to the changes mentioned.

nicole 2013-03-14 13:46 administrator ~0008124 Last edited: 2013-03-14 13:48	New version of the BrainAtlas2012.mrb uploaded as a new revision of http://slicer.kitware.com/midas3/download?items=10937 Nightly tests and GUI atlas tests should grab this now. Will contact Marianna to update the pubdb version.

jcfr 2013-03-19 10:50 administrator ~0008154	Is this resolved ?

nicole 2013-03-19 11:23 administrator ~0008162 Last edited: 2013-03-19 11:24	Not quite, I encountered a scene view restore bug and a problem with the .mrb file that I was starting from and then also in the correct one (file paths wrong) and had to redo the hide from editor setting as well as tweaking the .mrml file by hand. I'm currently trying to determine if the scene view restore crash is reproducible with other scenes and if not what the lowest impact fix would be. See bug 0002557.

nicole 2013-04-10 10:54 administrator ~0008367	The scene view crash bug is fixed, the Brain Atlas tested via the Test Cases module and nightly tests shows models as expected now.

Date Modified	Username	Field	Change
2013-03-12 08:54	kikinis	New Issue
2013-03-12 08:54	kikinis	Status	new => assigned
2013-03-12 08:54	kikinis	Assigned To	=> kikinis
2013-03-12 08:54	kikinis	File Added: Screen Shot 2013-03-12 at 12.51.41 PM.png
2013-03-12 10:41	pieper	Note Added: 0008111
2013-03-12 10:41	pieper	Assigned To	kikinis => finetjul
2013-03-12 10:59	jcfr	Assigned To	finetjul => nicole
2013-03-12 11:00	jcfr	Note Added: 0008113
2013-03-12 11:10	jcfr	Target Version	=> Slicer 4.3.0
2013-03-13 06:17	nicole	Note Added: 0008116
2013-03-13 10:14	kikinis	Note Added: 0008117
2013-03-13 11:18	nicole	Relationship added	child of 0002906
2013-03-13 11:19	sankhesh	Note Added: 0008118
2013-03-14 13:46	nicole	Note Added: 0008124
2013-03-14 13:48	nicole	Note Edited: 0008124
2013-03-19 10:50	jcfr	Note Added: 0008154
2013-03-19 11:23	nicole	Note Added: 0008162
2013-03-19 11:24	jcfr	Note Edited: 0008162
2013-03-19 11:25	jcfr	Relationship added	related to 0002557
2013-04-10 10:54	nicole	Note Added: 0008367
2013-04-10 10:54	nicole	Status	assigned => resolved
2013-04-10 10:54	nicole	Fixed in Version	=> Slicer 4.3.0
2013-04-10 10:54	nicole	Resolution	open => fixed
2013-07-26 19:05	kikinis	Status	resolved => closed

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Issue History

related to	0002557	closed	sankhesh	Models hierarchy: whenever the eye is clicked on a node complex hierarchy, the whole interface refreshes collapsing all nodes
child of	0002906	closed	nicole	Extra model hierarchy nodes showing up in Models module