0002774: SlicerApp-real does not work in QtCreator - MantisBT

ID	Project	Category	View Status	Date Submitted	Last Update

0002774	Slicer4	Core: Building (CMake, Superbuild)	public	2012-11-19 11:57	2014-03-06 04:55

Reporter	sankhesh	Assigned To	jcfr
Priority	normal	Severity	major	Reproducibility	always
Status	closed	Resolution	fixed
Platform	Linux	OS	Ubuntu	OS Version	12.04
Product Version	Slicer 4.2.0
Target Version	Slicer 4.2.2-1	Fixed in Version	Slicer 4.2.2-1

Summary	0002774: SlicerApp-real does not work in QtCreator
Description	When I try to run SlicerApp-real in QtCreator launched with the Slicer launcher, the executable crashes with the following error: Starting /home/sankhesh/Projects/Slicer/bld-new-workdir/Slicer-build/bin/SlicerApp-real... /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv /home/sankhesh/Projects/Slicer/bld/Slicer-build/bin/libMRMLCorePythonD.so: undefined symbol: _ZN44vtkMRMLDiffusionTensorVolumeSliceDisplayNode11GetPolyDataEv Number of registered modules: 117 Traceback (most recent call last): File "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/DICOM.py", line 33, in init if slicer.mrmlScene.GetTagByClassName( "vtkMRMLScriptedModuleNode" ) != 'ScriptedModule': AttributeError: GetTagByClassName qSlicerScriptedLoadableModuleWidget::setPythonSource "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/DICOM.py" - Failed to instantiate scripted pythonqt class "DICOM" 0x24ad410 Fail to instantiate module "DICOM" Traceback (most recent call last): File "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/DataProbe.py", line 25, in init if slicer.mrmlScene.GetTagByClassName( "vtkMRMLScriptedModuleNode" ) != 'ScriptedModule': AttributeError: GetTagByClassName qSlicerScriptedLoadableModuleWidget::setPythonSource "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/DataProbe.py" - Failed to instantiate scripted pythonqt class "DataProbe" 0x24c25f0 http://na-mic.org/Mantis/bug_report_advanced_page.php Fail to instantiate module "DataProbe" Traceback (most recent call last): File "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/Editor.py", line 29, in init if slicer.mrmlScene.GetTagByClassName( "vtkMRMLScriptedModuleNode" ) != 'ScriptedModule': AttributeError: GetTagByClassName qSlicerScriptedLoadableModuleWidget::setPythonSource "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/Editor.py" - Failed to instantiate scripted pythonqt class "Editor" 0x25c8b30 Fail to instantiate module "Editor" SystemError: Objects/classobject.c:508: bad argument to internal function qSlicerScriptedLoadableModuleWidget::setPythonSource "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/RSNA2012ProstateDemo.py" - Failed to instantiate scripted pythonqt class "RSNA2012ProstateDemo" 0x2ac6760 Fail to instantiate module "RSNA2012ProstateDemo" Traceback (most recent call last): File "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/SampleData.py", line 25, in init if slicer.mrmlScene.GetTagByClassName( "vtkMRMLScriptedModuleNode" ) != 'ScriptedModule': AttributeError: GetTagByClassName qSlicerScriptedLoadableModuleWidget::setPythonSource "/home/sankhesh/Projects/Slicer/bld/Slicer-build/lib/Slicer-4.2/qt-scripted-modules/SampleData.py" - Failed to instantiate scripted pythonqt class "SampleData" 0x2aa0230 Fail to instantiate module "SampleData" Number of instantiated modules: 112 [VGL] NOTICE: Pixel format of 2D X server does not match pixel format of [VGL] Pbuffer. Disabling PBO readback. The program has unexpectedly finished. /home/sankhesh/Projects/Slicer/bld-new-workdir/Slicer-build/bin/SlicerApp-real exited with code 0
Steps To Reproduce	Slicer --launch qtcreator Run SlicerApp-real
Tags	No tags attached.

jcfr 2012-11-19 12:00 administrator ~0007323	Since both QtCreator and Slicer link against python, it is expected to have a problem. Two solutions: 1) Build QtCreator against the same python that is used by Slicer (tedious ...) 2) Start Slicer outside of QtCreator with the flag "--attach-process", then use "the attach process" feature of gdb (od ddd)

jcfr 2014-03-06 04:53 administrator ~0010759	Closing resolved issues that have not been updated in more than 3 months

Date Modified	Username	Field	Change
2012-11-19 11:57	sankhesh	New Issue
2012-11-19 11:57	sankhesh	Status	new => assigned
2012-11-19 11:57	sankhesh	Assigned To	=> jcfr
2012-11-19 12:00	jcfr	Note Added: 0007323
2012-11-19 12:00	jcfr	Status	assigned => resolved
2012-11-19 12:00	jcfr	Fixed in Version	=> Slicer 4.2.2
2012-11-19 12:00	jcfr	Resolution	open => fixed
2012-11-19 12:00	jcfr	Target Version	=> Slicer 4.2.2
2014-03-06 04:53	jcfr	Note Added: 0010759
2014-03-06 04:55	jcfr	Status	resolved => closed