0002512: Tutorial 10 - Image-guided prostate interventions

ID	Project	Category	View Status	Date Submitted	Last Update

0002512	Slicer4		public	2012-09-13 11:46	2013-07-08 09:57

Reporter	jcfr	Assigned To	pieper
Priority	normal	Severity	crash	Reproducibility	have not tried
Status	closed	Resolution	fixed
Product Version
Target Version	Slicer 4.2.1	Fixed in Version	Slicer 4.2.1

Summary	0002512: Tutorial 10 - Image-guided prostate interventions
Description	See http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
Tags	No tags attached.

jcfr 2012-10-30 12:30 administrator ~0006937	Any update ?

millerjv 2012-10-31 11:24 developer ~0006979	Waiting for Andriy to confirm

fedorov 2012-10-31 12:53 developer ~0006994	1) Fiducials do not show up in the compare views 2) after switching the scenes several times, Slicer crashed: Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 libCTKWidgets.0.1.dylib 0x0000000100f455f8 ctkLayoutManager::setupView(QDomElement, QWidget) + 24 1 libqMRMLWidgets.dylib 0x00000001004e176c qMRMLLayoutManager::setupView(QDomElement, QWidget) + 60 2 libCTKWidgets.0.1.dylib 0x0000000100f440b0 ctkLayoutManager::widgetItemFromXML(QDomElement) + 112 3 libCTKWidgets.0.1.dylib 0x0000000100f473bf ctkLayoutManager::processElement(QDomElement) + 367 4 libCTKWidgets.0.1.dylib 0x0000000100f46559 ctkLayoutManager::processItemElement(QDomElement, QLayoutItem) + 761 5 libCTKWidgets.0.1.dylib 0x0000000100f468a8 ctkLayoutManager::processLayoutElement(QDomElement) + 280 6 libCTKWidgets.0.1.dylib 0x0000000100f47301 ctkLayoutManager::processElement(QDomElement) + 177 7 libCTKWidgets.0.1.dylib 0x0000000100f46559 ctkLayoutManager::processItemElement(QDomElement, QLayoutItem) + 761 8 libCTKWidgets.0.1.dylib 0x0000000100f468a8 ctkLayoutManager::processLayoutElement(QDomElement) + 280 9 libCTKWidgets.0.1.dylib 0x0000000100f47301 ctkLayoutManager::processElement(QDomElement) + 177 10 libCTKWidgets.0.1.dylib 0x0000000100f45125 ctkLayoutManager::setupLayout() + 437 11 libCTKWidgets.0.1.dylib 0x0000000100f44dce ctkLayoutManager::refresh() + 94 12 libqMRMLWidgets.dylib 0x00000001004e18c3 qMRMLLayoutManagerPrivate::updateLayoutInternal() + 163 13 libqMRMLWidgets.dylib 0x000000010054617e qMRMLLayoutManagerPrivate::qt_metacall(QMetaObject::Call, int, void) + 238 14 QtCore 0x00000001076b49d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 15 ...ualizationVTKCore.0.1.dylib 0x00000001032dbef5 ctkVTKConnection::emitExecute(vtkObject, void, unsigned long, void) + 85 16 ...ualizationVTKCore.0.1.dylib 0x00000001032cda48 ctkVTKConnectionPrivate::execute(vtkObject, unsigned long, void, void) + 488 17 libvtkCommon.5.10.dylib 0x000000010b0eb881 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 18 libMRMLCore.dylib 0x000000010549be03 vtkEventBroker::InvokeObservation(vtkObservation, void) + 307 19 libMRMLCore.dylib 0x000000010549c37f vtkEventBroker::ProcessEvent(vtkObservation, vtkObject, unsigned long, void) + 767 20 libvtkCommon.5.10.dylib 0x000000010b0eb881 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 21 libvtkCommon.5.10.dylib 0x000000010b0d4b77 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 1303 22 libMRMLCLI.dylib 0x000000010542a702 vtkMRMLNode::InvokePendingModifiedEvent() + 34 23 libMRMLLogic.dylib 0x000000010310c8ff vtkMRMLLayoutLogic::SetLayoutNode(vtkMRMLLayoutNode) + 111 24 libMRMLLogic.dylib 0x00000001031121eb vtkMRMLLayoutLogic::UpdateLayoutNode() + 251 25 libMRMLLogic.dylib 0x00000001030fdb57 vtkMRMLAbstractLogic::MRMLSceneCallback(vtkObject, unsigned long, void, void) + 103 26 libvtkCommon.5.10.dylib 0x000000010b0eb881 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 27 libMRMLCore.dylib 0x000000010549be03 vtkEventBroker::InvokeObservation(vtkObservation, void) + 307 28 libMRMLCore.dylib 0x000000010549c37f vtkEventBroker::ProcessEvent(vtkObservation, vtkObject, unsigned long, void) + 767 29 libvtkCommon.5.10.dylib 0x000000010b0eb881 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 30 libvtkCommon.5.10.dylib 0x000000010b0d4b77 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 1303 31 libMRMLCore.dylib 0x0000000105561897 vtkMRMLScene::EndState(unsigned long) + 103 32 libMRMLCore.dylib 0x0000000105575e0e vtkMRMLSceneViewNode::RestoreScene() + 3038 33 libqMRMLWidgets.dylib 0x000000010054943c qMRMLSceneViewMenuPrivate::qt_metacall(QMetaObject::Call, int, void) + 284 34 QtCore 0x00000001076b49d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 35 QtCore 0x00000001077ac319 QSignalMapper::mapped(QString const&) + 41 36 QtCore 0x00000001077ac78f QSignalMapper::map(QObject) + 159 37 QtCore 0x00000001077ace36 QSignalMapper::qt_metacall(QMetaObject::Call, int, void) + 182 38 QtCore 0x00000001076b49d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 39 QtGui 0x0000000106a28a11 QAction::triggered(bool) + 49 40 QtGui 0x0000000106a29da4 QAction::activate(QAction::ActionEvent) + 180 41 QtGui 0x0000000106e32f20 QMenuPrivate::activateCausedStack(QList<QPointer<QWidget> > const&, QAction, QAction::ActionEvent, bool) + 352 42 QtGui 0x0000000106e385f4 QMenuPrivate::activateAction(QAction, QAction::ActionEvent, bool) + 324 43 QtGui 0x0000000106a85970 QWidget::event(QEvent) + 2384 44 QtGui 0x0000000106e3803b QMenu::event(QEvent) + 107 45 QtGui 0x0000000106a2e87d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 46 QtGui 0x0000000106a35040 QApplication::notify(QObject, QEvent) + 2416 47 QtCore 0x00000001076ae23c QCoreApplication::notifyInternal(QObject, QEvent) + 124 48 QtGui 0x0000000106a2dd7c qt_sendSpontaneousEvent(QObject, QEvent) + 44 49 QtGui 0x00000001069e549d qt_mac_handleMouseEvent(void, void, QEvent::Type, Qt::MouseButton) + 2269 50 QtGui 0x00000001069d5be6 -[QCocoaView mouseUp:] + 22 51 com.apple.AppKit 0x00007fff82ece431 -[NSWindow sendEvent:] + 5547 52 QtGui 0x00000001069d3ce1 -[QCocoaPanel sendEvent:] + 241 53 com.apple.AppKit 0x00007fff82e03afa -[NSApplication sendEvent:] + 4719 54 QtGui 0x00000001069e062a -[QNSApplication sendEvent:] + 74 55 com.apple.AppKit 0x00007fff82d9a6de -[NSApplication run] + 474 56 QtGui 0x00000001069ea324 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588 57 QtCore 0x0000000107798ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 58 QtCore 0x00000001077991f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 59 QtGui 0x0000000106e35d14 QMenu::exec(QPoint const&, QAction) + 116 60 QtGui 0x0000000106e76001 QToolButtonPrivate::popupTimerDone() + 1025 61 QtGui 0x0000000106e7698a QToolButton::qt_metacall(QMetaObject::Call, int, void) + 442 62 QtCore 0x00000001076b49d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 63 QtGui 0x0000000106dad1c3 QAbstractButtonPrivate::emitPressed() + 51 64 QtGui 0x0000000106dad38b QAbstractButton::mousePressEvent(QMouseEvent) + 123 65 QtGui 0x0000000106e76e28 QToolButton::mousePressEvent(QMouseEvent) + 104 66 QtGui 0x0000000106a85c24 QWidget::event(QEvent) + 3076 67 QtGui 0x0000000106dad5e8 QAbstractButton::event(QEvent) + 40 68 QtGui 0x0000000106e76daf QToolButton::event(QEvent) + 63 69 QtGui 0x0000000106a2e87d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 70 QtGui 0x0000000106a35040 QApplication::notify(QObject, QEvent) + 2416 71 QtCore 0x00000001076ae23c QCoreApplication::notifyInternal(QObject, QEvent) + 124 72 QtGui 0x0000000106a2dd7c qt_sendSpontaneousEvent(QObject, QEvent) + 44 73 QtGui 0x00000001069e549d qt_mac_handleMouseEvent(void, void*, QEvent::Type, Qt::MouseButton) + 2269 74 com.apple.AppKit 0x00007fff82ece3a7 -[NSWindow sendEvent:] + 5409 75 QtGui 0x00000001069dcfb1 -[QCocoaWindow sendEvent:] + 241 76 com.apple.AppKit 0x00007fff82e03afa -[NSApplication sendEvent:] + 4719 77 QtGui 0x00000001069e062a -[QNSApplication sendEvent:] + 74 78 com.apple.AppKit 0x00007fff82d9a6de -[NSApplication run] + 474 79 QtGui 0x00000001069ea324 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588 80 QtCore 0x0000000107798ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 81 QtCore 0x00000001077991f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 82 QtCore 0x000000010779a5aa QCoreApplication::exec() + 186 83 0x0000000100020aa8 main + 3016 84 0x000000010001fd68 start + 52

fedorov 2012-10-31 14:08 developer ~0006995	According to Steve, fiducials were disabled in compareview/lightbox intentionally.

pieper 2012-11-01 06:01 administrator ~0006996	As a follow up, I was testing on the 4.2 release build and could pretty reliably get a crash with the following sequence: download sample volume enter lightbox mode in Red view start Chart self test The stack trace is posted below. I'm adding this info to bug 2512. http://www.na-mic.org/Bug/view.php?id=2512 This doesn't match stack trace Andrey showed in the video, but may have a similar cause. -Steve Process: Slicer [60052] Path: /Applications/Slicer 4.2.app/Contents/MacOS/Slicer Identifier: ??? Version: 4.2.0 (4.2.0) Code Type: X86-64 (Native) Parent Process: launchd [219] User ID: 501 Date/Time: 2012-11-01 09:52:58.147 -0400 OS Version: Mac OS X 10.8.2 (12C60) Report Version: 10 Interval Since Last Report: 382686 sec Crashes Since Last Report: 5 Per-App Interval Since Last Report: 2077 sec Per-App Crashes Since Last Report: 1 Anonymous UUID: 14CBA9AD-EC76-8CAE-3C0C-B908F150B4B9 Crashed Thread: 0 Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000 VM Regions Near 0: --> __TEXT 0000000100000000-0000000100022000 [ 136K] r-x/rwx SM=COW /Applications/Slicer 4.2.app/Contents/MacOS/Slicer Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystem_c.dylib 0x00007fff865f7a50 memmove$VARIANT$sse42 + 136 1 libGLImage.dylib 0x00007fff8b3e4a99 glgCopyRowsWithMemCopy(GLGOperationRec const, unsigned long, GLDPixelModeRec const) + 78 2 libGLImage.dylib 0x00007fff8b3e3644 glgProcessPixelsWithProcessor + 885 3 GLEngine 0x0000000124b228ae gleCopySubImage + 425 4 GLEngine 0x0000000124a1c5a5 gleDrawPixelsFast + 14948 5 GLEngine 0x0000000124a18ade glDrawPixels_Exec + 434 6 libvtkRendering.5.10.dylib 0x000000010667ae03 void vtkOpenGLImageMapperRenderChar<unsigned char>(vtkOpenGLImageMapper, vtkImageData, unsigned char, int, int, int, int) + 1075 7 libvtkRendering.5.10.dylib 0x00000001066758bb vtkOpenGLImageMapper::RenderData(vtkViewport, vtkImageData, vtkActor2D) + 2427 8 libvtkRendering.5.10.dylib 0x0000000106555896 vtkImageMapper::RenderStart(vtkViewport, vtkActor2D) + 2022 9 libvtkFiltering.5.10.dylib 0x000000010aca77f6 vtkActor2D::RenderOverlay(vtkViewport) + 86 10 libvtkRendering.5.10.dylib 0x00000001065f9560 vtkRenderer::UpdateGeometry() + 384 11 libvtkRendering.5.10.dylib 0x0000000106696055 vtkOpenGLRenderer::DeviceRender() + 277 12 libvtkRendering.5.10.dylib 0x00000001065fb9d9 vtkRenderer::Render() + 1065 13 libvtkRendering.5.10.dylib 0x00000001065f8081 vtkRendererCollection::Render() + 129 14 libvtkRendering.5.10.dylib 0x00000001066020e5 vtkRenderWindow::DoStereoRender() + 181 15 libvtkRendering.5.10.dylib 0x0000000106601ed1 vtkRenderWindow::DoFDRender() + 881 16 libvtkRendering.5.10.dylib 0x0000000106602652 vtkRenderWindow::DoAARender() + 1186 17 libvtkRendering.5.10.dylib 0x000000010660004b vtkRenderWindow::Render() + 267 18 libCTKVisualizationVTKWidgets.0.1.dylib 0x0000000100ea5169 ctkVTKAbstractView::qt_metacall(QMetaObject::Call, int, void) + 633 19 libCTKVisualizationVTKWidgets.0.1.dylib 0x0000000100ea68b5 ctkVTKSliceView::qt_metacall(QMetaObject::Call, int, void) + 37 20 libqMRMLWidgets.dylib 0x0000000100543875 qMRMLSliceView::qt_metacall(QMetaObject::Call, int, void) + 37 21 QtCore 0x000000010769d9d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 22 libCTKVisualizationVTKCore.0.1.dylib 0x00000001032cdf55 ctkVTKConnection::emitExecute(vtkObject, void, unsigned long, void) + 85 23 libCTKVisualizationVTKCore.0.1.dylib 0x00000001032bfaa8 ctkVTKConnectionPrivate::execute(vtkObject, unsigned long, void, void) + 488 24 libvtkCommon.5.10.dylib 0x000000010b0c58f1 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 25 libMRMLCore.dylib 0x000000010548c143 vtkEventBroker::InvokeObservation(vtkObservation, void) + 307 26 libMRMLCore.dylib 0x000000010548c6bf vtkEventBroker::ProcessEvent(vtkObservation, vtkObject, unsigned long, void) + 767 27 libvtkCommon.5.10.dylib 0x000000010b0c58f1 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 28 libvtkCommon.5.10.dylib 0x000000010b0aebe7 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 1303 29 libQVTK.5.10.dylib 0x00000001013df59d QVTKWidget::paintEvent(QPaintEvent) + 141 30 QtGui 0x0000000106a6e916 QWidget::event(QEvent) + 2294 31 libQVTK.5.10.dylib 0x00000001013dfa59 QVTKWidget::event(QEvent) + 89 32 QtGui 0x0000000106a1787d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 33 QtGui 0x0000000106a1dec4 QApplication::notify(QObject, QEvent) + 2036 34 QtCore 0x000000010769723c QCoreApplication::notifyInternal(QObject, QEvent) + 124 35 QtGui 0x0000000106a16d7c qt_sendSpontaneousEvent(QObject, QEvent) + 44 36 QtGui 0x00000001069c1796 -[QCocoaView drawRect:] + 1206 37 com.apple.AppKit 0x00007fff87dde144 -[NSView _drawRect:clip:] + 4217 38 com.apple.AppKit 0x00007fff87ddc7a1 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 1656 39 com.apple.AppKit 0x00007fff87ddcbb9 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2704 40 com.apple.AppKit 0x00007fff87ddcbb9 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2704 41 com.apple.AppKit 0x00007fff87ddcbb9 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2704 42 com.apple.AppKit 0x00007fff87ddcbb9 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2704 43 com.apple.AppKit 0x00007fff87ddcbb9 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2704 44 com.apple.AppKit 0x00007fff87ddcbb9 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2704 45 com.apple.AppKit 0x00007fff87ddcbb9 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2704 46 com.apple.AppKit 0x00007fff87dda7d2 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 817 47 com.apple.AppKit 0x00007fff87ddbb24 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 5763 48 com.apple.AppKit 0x00007fff87ddbb24 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 5763 49 com.apple.AppKit 0x00007fff87ddbb24 -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 5763 50 com.apple.AppKit 0x00007fff87dda223 -[NSThemeFrame _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 314 51 com.apple.AppKit 0x00007fff87dd5e4d -[NSView _displayRectIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:] + 4675 52 com.apple.AppKit 0x00007fff87d9fd73 -[NSView displayIfNeeded] + 1830 53 QtGui 0x00000001069c5bba -[QCocoaWindow displayIfNeeded] + 250 54 com.apple.AppKit 0x00007fff87d9f2ac _handleWindowNeedsDisplayOrLayoutOrUpdateConstraints + 738 55 com.apple.AppKit 0x00007fff8836a971 83-[NSWindow _postWindowNeedsDisplayOrLayoutOrUpdateConstraintsUnlessPostingDisabled]_block_invoke_01208 + 46 56 com.apple.CoreFoundation 0x00007fff8a3a69b7 CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION + 23 57 com.apple.CoreFoundation 0x00007fff8a3a6921 CFRunLoopDoObservers + 369 58 com.apple.CoreFoundation 0x00007fff8a381d88 __CFRunLoopRun + 728 59 com.apple.CoreFoundation 0x00007fff8a3816b2 CFRunLoopRunSpecific + 290 60 com.apple.HIToolbox 0x00007fff868d60a4 RunCurrentEventLoopInMode + 209 61 com.apple.HIToolbox 0x00007fff868d5d84 ReceiveNextEventCommon + 166 62 com.apple.HIToolbox 0x00007fff868d5cd3 BlockUntilNextEventMatchingListInMode + 62 63 com.apple.AppKit 0x00007fff87d9c613 _DPSNextEvent + 685 64 com.apple.AppKit 0x00007fff87d9bed2 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 128 65 com.apple.AppKit 0x00007fff87fe6709 -[NSApplication _realDoModalLoop:peek:] + 485 66 com.apple.AppKit 0x00007fff87fe6e3e -[NSApplication runModalSession:] + 49 67 QtGui 0x00000001069d31fe QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1294 68 QtCore 0x0000000107781ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 69 QtCore 0x00000001077821f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 70 QtGui 0x0000000106e91eb5 QDialog::exec() + 229 71 QtGui 0x0000000106e928f1 QDialog::qt_metacall(QMetaObject::Call, int, void) + 273 72 libPythonQt.dylib 0x00000001036cecdc PythonQtCallSlot(PythonQtClassInfo, QObject, _object, bool, PythonQtSlotInfo, void, _object, void) + 1356 73 libPythonQt.dylib 0x00000001036cfc50 PythonQtSlotFunction_CallImpl(PythonQtClassInfo, QObject, PythonQtSlotInfo, _object, _object, void, void) + 1408 74 libPythonQt.dylib 0x00000001036d03f7 PythonQtMemberFunction_Call(PythonQtSlotInfo, _object, _object, _object) + 151 75 libpython2.6.dylib 0x00000001052059c2 PyObject_Call + 98 76 libpython2.6.dylib 0x00000001052adf1f PyEval_EvalFrameEx + 8543 77 libpython2.6.dylib 0x00000001052b2e49 PyEval_EvalCodeEx + 2281 78 libpython2.6.dylib 0x00000001052b02d0 PyEval_EvalFrameEx + 17680 79 libpython2.6.dylib 0x00000001052b20f7 PyEval_EvalFrameEx + 25399 80 libpython2.6.dylib 0x00000001052b20f7 PyEval_EvalFrameEx + 25399 81 libpython2.6.dylib 0x00000001052b2e49 PyEval_EvalCodeEx + 2281 82 libpython2.6.dylib 0x0000000105235685 function_call + 165 83 libpython2.6.dylib 0x00000001052059c2 PyObject_Call + 98 84 libpython2.6.dylib 0x0000000105217f5b instancemethod_call + 363 85 libpython2.6.dylib 0x00000001052059c2 PyObject_Call + 98 86 libpython2.6.dylib 0x00000001052aac47 PyEval_CallObjectWithKeywords + 87 87 libPythonQt.dylib 0x00000001036cc6ba PythonQtSignalTarget::call(_object, PythonQtMethodInfo const, void, bool) + 218 88 libPythonQt.dylib 0x00000001036cd290 PythonQtSignalReceiver::qt_metacall(QMetaObject::Call, int, void) + 176 89 QtCore 0x000000010769d9d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 90 QtGui 0x0000000107062701 QAbstractButton::clicked(bool) + 49 91 QtGui 0x0000000106d963e0 QAbstractButtonPrivate::emitClicked() + 64 92 QtGui 0x0000000106d9747a QAbstractButtonPrivate::click() + 154 93 QtGui 0x0000000106d976d1 QAbstractButton::mouseReleaseEvent(QMouseEvent) + 113 94 libPythonQt.dylib 0x00000001038908ac PythonQtShell_QPushButton::mouseReleaseEvent(QMouseEvent) + 236 95 QtGui 0x0000000106a6e970 QWidget::event(QEvent) + 2384 96 QtGui 0x0000000106d965e8 QAbstractButton::event(QEvent) + 40 97 QtGui 0x0000000106e2d745 QPushButton::event(QEvent) + 69 98 libPythonQt.dylib 0x00000001038a203c PythonQtShell_QPushButton::event(QEvent) + 300 99 QtGui 0x0000000106a1787d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 100 QtGui 0x0000000106a1e040 QApplication::notify(QObject, QEvent) + 2416 101 QtCore 0x000000010769723c QCoreApplication::notifyInternal(QObject, QEvent) + 124 102 QtGui 0x0000000106a16d7c qt_sendSpontaneousEvent(QObject, QEvent) + 44 103 QtGui 0x00000001069ce49d qt_mac_handleMouseEvent(void, void, QEvent::Type, Qt::MouseButton) + 2269 104 QtGui 0x00000001069bebe6 -[QCocoaView mouseUp:] + 22 105 com.apple.AppKit 0x00007fff87e816d6 -[NSWindow sendEvent:] + 7053 106 QtGui 0x00000001069c5fb1 -[QCocoaWindow sendEvent:] + 241 107 com.apple.AppKit 0x00007fff87e7d744 -[NSApplication sendEvent:] + 5761 108 QtGui 0x00000001069c962a -[QNSApplication sendEvent:] + 74 109 com.apple.AppKit 0x00007fff87d932fa -[NSApplication run] + 636 110 QtGui 0x00000001069d3324 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588 111 QtCore 0x0000000107781ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 112 QtCore 0x00000001077821f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 113 QtCore 0x00000001077835aa QCoreApplication::exec() + 186 114 0x000000010001faa8 main + 3016 115 0x000000010001ed68 start + 52 Thread 1:: Dispatch queue: com.apple.libdispatch-manager 0 libsystem_kernel.dylib 0x00007fff8c939d16 kevent + 10 1 libdispatch.dylib 0x00007fff8d4bcdea _dispatch_mgr_invoke + 883 2 libdispatch.dylib 0x00007fff8d4bc9ee _dispatch_mgr_thread + 54 Thread 2: 0 libsystem_kernel.dylib 0x00007fff8c939ffa read + 10 1 libCTKCore.0.1.dylib 0x000000010445b906 ctkFDHandler::run() + 134 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 3: 0 libsystem_kernel.dylib 0x00007fff8c939ffa read + 10 1 libCTKCore.0.1.dylib 0x000000010445b906 ctkFDHandler::run() + 134 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 4: 0 libsystem_kernel.dylib 0x00007fff8c939386 __semwait_signal + 10 1 libsystem_c.dylib 0x00007fff86694800 nanosleep + 163 2 libsystem_c.dylib 0x00007fff86694717 usleep + 54 3 libSlicerBaseLogic.dylib 0x0000000102fbdaba vtkSlicerApplicationLogic::ProcessProcessingTasks() + 154 4 libSlicerBaseLogic.dylib 0x0000000102fbdbff vtkSlicerApplicationLogic::ProcessingThreaderCallback(void) + 31 5 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 6 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 5: 0 libsystem_kernel.dylib 0x00007fff8c939386 __semwait_signal + 10 1 libsystem_c.dylib 0x00007fff86694800 nanosleep + 163 2 libsystem_c.dylib 0x00007fff86694717 usleep + 54 3 libSlicerBaseLogic.dylib 0x0000000102fbdcaa vtkSlicerApplicationLogic::ProcessNetworkingTasks() + 154 4 libSlicerBaseLogic.dylib 0x0000000102fbddef vtkSlicerApplicationLogic::NetworkingThreaderCallback(void) + 31 5 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 6 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 6: 0 libsystem_kernel.dylib 0x00007fff8c9390fa __psynch_cvwait + 10 1 libsystem_c.dylib 0x00007fff8660ef89 _pthread_cond_wait + 869 2 QtWebKit 0x000000010213b048 WTF::TCMalloc_PageHeap::scavengerThread() + 520 3 QtWebKit 0x000000010213b0e9 WTF::TCMalloc_PageHeap::runScavengerThread(void) + 9 4 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 5 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 7: 0 libsystem_kernel.dylib 0x00007fff8c939322 __select + 10 1 QtCore 0x00000001077a3935 qt_safe_select(int, fd_set, fd_set, fd_set, timeval const) + 389 2 QtCore 0x00000001077a7bd3 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timeval) + 435 3 QtCore 0x00000001077a80a2 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 178 4 QtCore 0x0000000107781ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 5 QtCore 0x00000001077821f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 6 QtCore 0x00000001076ca116 QThread::exec() + 182 7 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 8 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 9 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 8: 0 libsystem_kernel.dylib 0x00007fff8c939d16 kevent + 10 1 QtCore 0x000000010776ea2b QKqueueFileSystemWatcherEngine::run() + 155 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 9: 0 libsystem_kernel.dylib 0x00007fff8c939322 __select + 10 1 QtCore 0x0000000107764410 QProcessManager::run() + 96 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 10:: com.apple.CFSocket.private 0 libsystem_kernel.dylib 0x00007fff8c939322 select + 10 1 com.apple.CoreFoundation 0x00007fff8a3c14e6 CFSocketManager + 1302 2 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 3 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 11: 0 libsystem_kernel.dylib 0x00007fff8c939d16 kevent + 10 1 QtCore 0x000000010776ea2b QKqueueFileSystemWatcherEngine::run() + 155 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 12: 0 libsystem_kernel.dylib 0x00007fff8c9390fa __psynch_cvwait + 10 1 libsystem_c.dylib 0x00007fff8660ef89 _pthread_cond_wait + 869 2 QtCore 0x000000010764f130 QWaitCondition::wait(QMutex, unsigned long) + 304 3 QtGui 0x0000000106ece683 QFileInfoGatherer::run() + 531 4 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 5 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 6 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 13: 0 libsystem_kernel.dylib 0x00007fff8c939d16 kevent + 10 1 QtCore 0x000000010776ea2b QKqueueFileSystemWatcherEngine::run() + 155 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 14: 0 libsystem_kernel.dylib 0x00007fff8c939d16 kevent + 10 1 QtCore 0x000000010776ea2b QKqueueFileSystemWatcherEngine::run() + 155 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 15: 0 libsystem_kernel.dylib 0x00007fff8c939d16 kevent + 10 1 QtCore 0x000000010776ea2b QKqueueFileSystemWatcherEngine::run() + 155 2 QtCore 0x00000001076cb125 QThreadPrivate::start(void) + 149 3 libsystem_c.dylib 0x00007fff8660a742 _pthread_start + 327 4 libsystem_c.dylib 0x00007fff865f7181 thread_start + 13 Thread 16: 0 libsystem_kernel.dylib 0x00007fff8c9396d6 __workq_kernreturn + 10 1 libsystem_c.dylib 0x00007fff8660ceec _pthread_workq_return + 25 2 libsystem_c.dylib 0x00007fff8660ccb3 _pthread_wqthread + 412 3 libsystem_c.dylib 0x00007fff865f7171 start_wqthread + 13 Thread 17: 0 libsystem_kernel.dylib 0x00007fff8c9396d6 __workq_kernreturn + 10 1 libsystem_c.dylib 0x00007fff8660ceec _pthread_workq_return + 25 2 libsystem_c.dylib 0x00007fff8660ccb3 _pthread_wqthread + 412 3 libsystem_c.dylib 0x00007fff865f7171 start_wqthread + 13 Thread 18: Thread 0 crashed with X86 Thread State (64-bit): rax: 0x00000001376c1000 rbx: 0x00000001376c1000 rcx: 0xffffffffffffff80 rdx: 0x0000000000000030 rdi: 0x00000001376c1080 rsi: 0x0000000000000080 rbp: 0x00007fff5fbf65e0 rsp: 0x00007fff5fbf65e0 r8: 0x00007fff5fbf6770 r9: 0x0000000000000000 r10: 0x0000000000016000 r11: 0x00000001376c1000 r12: 0x0000000000000000 r13: 0x0000000000000d00 r14: 0x00000000000000b0 r15: 0xffffffffffffffc9 rip: 0x00007fff865f7a50 rfl: 0x0000000000010246 cr2: 0x0000000000000000 Logical CPU: 2 Binary Images: 0x100000000 - 0x100021ff7 + (4.2.0 - 4.2.0) <534E0869-EED6-C129-2A03-4E31B70D8C30> /Applications/Slicer 4.2.app/Contents/MacOS/Slicer 0x100026000 - 0x1000cbfe7 +libqSlicerApp.dylib (0) <AC518F9A-777B-0F72-8911-59CE89089D45> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libqSlicerApp.dylib 0x1000de000 - 0x100139fe7 +libqSlicerBaseQTApp.dylib (0) <C5893487-0837-4C2B-0EF4-D2E3B062782A> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libqSlicerBaseQTApp.dylib 0x10013f000 - 0x1001a3fff +libqSlicerModulesCore.dylib (0) <1B7D8573-A4E6-898C-815E-DA1F61893A15> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libqSlicerModulesCore.dylib 0x1001b3000 - 0x10024fff7 +libqSlicerBaseQTCLI.dylib (0) <D2064013-C703-CCC2-299B-C6A386DE82A6> /Applications/Slicer 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<44464576-ACC8-C6E4-0BE9-9347D15E8EA2> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libSlicerBaseLogic.dylib 0x10305c000 - 0x1030affff +libMRMLDisplayableManager.dylib (0) <1620A72D-D147-3393-4F0E-A4A10414AB85> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libMRMLDisplayableManager.dylib 0x1030dd000 - 0x103163fe7 +libMRMLLogic.dylib (0) <63425D7E-1BA2-70CF-E5E9-5C9518D83CB4> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libMRMLLogic.dylib 0x103191000 - 0x103232fe7 +libarchive.12.dylib (0) <A57013CD-EECE-DAE9-6680-242329AD1279> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libarchive.12.dylib 0x103247000 - 0x103290fef +libRemoteIO.dylib (0) <E6A5F34B-39FA-0C3E-FA97-45D4B972BD4E> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libRemoteIO.dylib 0x10329e000 - 0x1032acfff +libCTKImageProcessingITKCore.0.1.dylib (0.1) <602DAA96-49F1-9B46-C839-515F8E923EEB> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/libCTKImageProcessingITKCore.0.1.dylib 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<E06FEB5D-06CF-6B0A-2B27-A5DEF7164E37> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerVolumesModuleLogicPythonD.dylib 0x117773000 - 0x117797ff7 +libvtkSlicerVolumesModuleLogic.dylib (0) <04D55481-99C9-2CB5-7462-7F0378E072F6> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerVolumesModuleLogic.dylib 0x1177a0000 - 0x1177c5fff +vtkSlicerDataModuleLogicPython.so (???) <B7F70A7B-421E-5931-CA73-6C7288452C64> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/vtkSlicerDataModuleLogicPython.so 0x1177c8000 - 0x1177f3ff7 +libvtkSlicerDataModuleLogicPythonD.dylib (0) <077A818F-BECF-CBFB-03AB-C431D8D42DE5> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDataModuleLogicPythonD.dylib 0x118000000 - 0x11801efff +libvtkSlicerDataModuleLogic.dylib (0) <C6A00AD4-1033-F888-F178-CD784B53D91B> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDataModuleLogic.dylib 0x118023000 - 0x118048fff +vtkSlicerDoubleArraysModuleLogicPython.so (???) <8084630A-D175-A3AF-40AB-C8F99C07BEDB> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/vtkSlicerDoubleArraysModuleLogicPython.so 0x11804b000 - 0x118075fff +libvtkSlicerDoubleArraysModuleLogicPythonD.dylib (0) <49C97E32-9DF4-6A26-C050-0B7BDBD0D9E5> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDoubleArraysModuleLogicPythonD.dylib 0x118079000 - 0x118097fff +libvtkSlicerDoubleArraysModuleLogic.dylib (0) <8B98FFAC-7F41-ADB4-E21A-7A3EC1875A94> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDoubleArraysModuleLogic.dylib 0x11809c000 - 0x1180c2fff +vtkSlicerEMSegmentModuleLogicPython.so (???) <728DEF0D-BB46-6FCD-CBA5-D903692652CF> /Applications/Slicer 4.2.app/Contents/lib/Slicer-4.2/qt-

fedorov 2012-11-01 06:19 developer ~0006997	I have a consistent crash if I try to use Editor while in Quantitative view: 1) download sample data 2) switch to conventional quantitative 3) try to apply threshold Console output: Show module (name): "Editor" ('setting selection node to ', None) ERROR: In /Users/fedorov/github/Slicer-Superbuild-Release/VTK/Filtering/vtkImageData.cxx, line 1530 vtkImageData (0x137b82d90): GetScalarPointer: Pixel (0, 52, 0) not in memory. Current extent= (0, 151, 0, 415, 5, 5) ERROR: In /Users/fedorov/github/Slicer-Superbuild-Release/VTK/Filtering/vtkImageData.cxx, line 1530 vtkImageData (0x137b82d90): GetScalarPointer: Pixel (0, 104, 0) not in memory. Current extent= (0, 151, 0, 415, 5, 5) ERROR: In /Users/fedorov/github/Slicer-Superbuild-Release/VTK/Filtering/vtkImageData.cxx, line 1530 vtkImageData (0x137b82d90): GetScalarPointer: Pixel (0, 208, 0) not in memory. Current extent= (0, 151, 0, 415, 5, 5) ERROR: In /Users/fedorov/github/Slicer-Superbuild-Release/VTK/Filtering/vtkImageData.cxx, line 1530 vtkImageData (0x137b82d90): GetScalarPointer: Pixel (0, 156, 0) not in memory. Current extent= (0, 151, 0, 415, 5, 5) error: [/Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/bin/Slicer.app/Contents/MacOS/./Slicer] exit abnormally - Report the problem. Thread 0: Dispatch 0 libSystem.B.dylib 1 libSystem.B.dylib 2 libvtkCommon.5.10.dylib 3 libvtkFiltering.5.10.dylib 4 libvtkFiltering.5.10.dylib 5 libvtkFiltering.5.10.dylib 6 libvtkFiltering.5.10.dylib 7 libvtkFiltering.5.10.dylib 8 libvtkFiltering.5.10.dylib 9 libvtkFiltering.5.10.dylib 10 libvtkFiltering.5.10.dylib 11 libvtkFiltering.5.10.dylib 12 libvtkFiltering.5.10.dylib 13 libvtkFiltering.5.10.dylib 14 libvtkFiltering.5.10.dylib 15 libvtkFiltering.5.10.dylib 16 ...FilteringPythonD.5.10.dylib 17 libpython2.6.dylib 18 libpython2.6.dylib 19 libpython2.6.dylib 20 libpython2.6.dylib 21 libpython2.6.dylib 22 libpython2.6.dylib 23 libpython2.6.dylib 24 libpython2.6.dylib 25 libpython2.6.dylib 26 libPythonQt.dylib 27 libPythonQt.dylib 28 QtCore 29 libPythonQt.dylib 30 QtCore 31 libPythonQt.dylib 32 QtGui 33 QtGui 34 QtCore 35 QtGui 36 QtGui 37 com.apple.CoreFoundation 38 com.apple.CoreFoundation 39 com.apple.HIToolbox 40 com.apple.HIToolbox 41 com.apple.HIToolbox 42 com.apple.AppKit 43 com.apple.AppKit 44 com.apple.AppKit 45 QtGui 46 QtCore 47 QtCore 48 QtCore 49 50 queue: com.apple.main-thread 0x00007fff878c4e52 bsdthread_create + 10 0x00007fff878c4d4a pthread_create + 905 0x000000010b2041e2 vtkMultiThreader::SingleMethodExecute() + 242 0x000000010af49758 vtkThreadedImageAlgorithm::RequestData(vtkInformation, vtkInformationVector, vtkInformationVector) + 248 0x000000010adb9cef vtkExecutive::CallAlgorithm(vtkInformation, int, vtkInformationVector, vtkInformationVector) + 79 0x000000010adacf0b vtkDemandDrivenPipeline::ExecuteData(vtkInformation, vtkInformationVector, vtkInformationVector) + 75 0x000000010adb02b8 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation, vtkInformationVector, vtkInformationVector) + 1368 0x000000010af36bf9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation, vtkInformationVector, vtkInformationVector) + 617 0x000000010adbaf5c vtkExecutive::ForwardUpstream(vtkInformation) + 236 0x000000010adb00c6 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation, vtkInformationVector, vtkInformationVector) + 870 0x000000010af36bf9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation, vtkInformationVector, vtkInformationVector) + 617 0x000000010adbaf5c vtkExecutive::ForwardUpstream(vtkInformation) + 236 0x000000010adb00c6 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation, vtkInformationVector, vtkInformationVector) + 870 0x000000010af36bf9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation, vtkInformationVector, vtkInformationVector) + 617 0x000000010adae75a vtkDemandDrivenPipeline::UpdateData(int) + 154 0x000000010af3696d vtkStreamingDemandDrivenPipeline::Update(int) + 141 0x0000000120f11d79 PyvtkAlgorithm_Update(_object, _object) + 121 0x000000010535934e PyEval_EvalFrameEx + 25982 (ceval.c:3750) 0x0000000105359e59 PyEval_EvalCodeEx + 2281 (ceval.c:3000) 0x00000001053572e0 PyEval_EvalFrameEx + 17680 (ceval.c:3846) 0x0000000105359e59 PyEval_EvalCodeEx + 2281 (ceval.c:3000) 0x00000001052dc695 function_call + 165 (funcobject.c:524) 0x00000001052ac9d2 PyObject_Call + 98 (abstract.c:2492) 0x00000001052bef6b instancemethod_call + 363 (classobject.c:2579) 0x00000001052ac9d2 PyObject_Call + 98 (abstract.c:2492) 0x0000000105351c57 PyEval_CallObjectWithKeywords + 87 (ceval.c:3619) 0x00000001037736ba PythonQtSignalTarget::call(_object, PythonQtMethodInfo const, void, bool) + 218 0x0000000103774290 PythonQtSignalReceiver::qt_metacall(QMetaObject::Call, int, void) + 176 0x00000001077419d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 0x00000001037b00cc PythonQtShell_QTimer::timerEvent(QTimerEvent) + 236 0x0000000107833cf0 QObject::event(QEvent) + 432 0x00000001037bbe3c PythonQtShell_QTimer::event(QEvent) + 300 0x0000000106abb87d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 0x0000000106ac1ec4 QApplication::notify(QObject, QEvent) + 2036 0x000000010773b23c QCoreApplication::notifyInternal(QObject, QEvent) + 124 0x0000000106abad7c qt_sendSpontaneousEvent(QObject, QEvent) + 44 0x0000000106a7591c QEventDispatcherMacPrivate::activateTimer(CFRunLoopTimer, void) + 188 0x00007fff818babb8 __CFRunLoopRun + 6488 0x00007fff818b8d8f CFRunLoopRunSpecific + 575 0x00007fff85d8774e RunCurrentEventLoopInMode + 333 0x00007fff85d87553 ReceiveNextEventCommon + 310 0x00007fff85d8740c BlockUntilNextEventMatchingListInMode + 59 0x00007fff82dd4eb2 _DPSNextEvent + 708 0x00007fff82dd4801 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 155 0x00007fff82d9a68f -[NSApplication run] + 395 0x0000000106a77324 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588 0x0000000107825ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 0x00000001078261f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 0x00000001078275aa QCoreApplication::exec() + 186 0x000000010001faa8 main + 3016 0x000000010001ed68 start + 52 Thread 1: Dispatch queue: com.apple.libdispatch-manager 0 libSystem.B.dylib 0x00007fff878a4c0a kevent + 10 1 libSystem.B.dylib 0x00007fff878a6add _dispatch_mgr_invoke + 154 2 libSystem.B.dylib 0x00007fff878a67b4 _dispatch_queue_invoke + 185 3 libSystem.B.dylib 0x00007fff878a62de _dispatch_worker_thread2 + 252 4 libSystem.B.dylib 0x00007fff878a5c08 _pthread_wqthread + 353 5 libSystem.B.dylib 0x00007fff878a5aa5 start_wqthread + 13 Thread 2: 0 libSystem.B.dylib 0x00007fff87896466 read + 10 1 libCTKCore.0.1.dylib 0x0000000104502906 ctkFDHandler::run() + 134 2 QtCore 0x000000010776f125 QThreadPrivate::start(void) + 149 3 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 4 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 3: 0 libSystem.B.dylib 0x00007fff87896466 read + 10 1 libCTKCore.0.1.dylib 0x0000000104502906 ctkFDHandler::run() + 134 2 QtCore 0x000000010776f125 QThreadPrivate::start(void) + 149 3 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 4 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 4: 0 libSystem.B.dylib 0x00007fff878c6a6a __semwait_signal + 10 1 libSystem.B.dylib 0x00007fff878c68f9 nanosleep + 148 2 libSystem.B.dylib 0x00007fff878c6863 usleep + 57 3 libSlicerBaseLogic.dylib 0x0000000103064c7a vtkSlicerApplicationLogic::ProcessProcessingTasks() + 154 4 libSlicerBaseLogic.dylib 0x0000000103064dbf vtkSlicerApplicationLogic::ProcessingThreaderCallback(void) + 31 5 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 6 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 5: 0 libSystem.B.dylib 0x00007fff878c6a6a __semwait_signal + 10 1 libSystem.B.dylib 0x00007fff878c68f9 nanosleep + 148 2 libSystem.B.dylib 0x00007fff878c6863 usleep + 57 3 libSlicerBaseLogic.dylib 0x0000000103064e6a vtkSlicerApplicationLogic::ProcessNetworkingTasks() + 154 4 libSlicerBaseLogic.dylib 0x0000000103064faf vtkSlicerApplicationLogic::NetworkingThreaderCallback(void) + 31 5 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 6 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 6: 0 libSystem.B.dylib 0x00007fff878c6a6a __semwait_signal + 10 1 libSystem.B.dylib 0x00007fff878ca881 _pthread_cond_wait + 1286 2 QtWebKit 0x000000010213c048 WTF::TCMalloc_PageHeap::scavengerThread() + 520 3 QtWebKit 0x000000010213c0e9 WTF::TCMalloc_PageHeap::runScavengerThread(void) + 9 4 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 5 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 7: 0 libSystem.B.dylib 0x00007fff878cf932 select$DARWIN_EXTSN + 10 1 QtCore 0x000000010784783e qt_safe_select(int, fd_set, fd_set, fd_set, timeval const) + 142 2 QtCore 0x000000010784bbd3 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timeval) + 435 3 QtCore 0x000000010784c0a2 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 178 4 QtCore 0x0000000107825ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 5 QtCore 0x00000001078261f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 6 QtCore 0x000000010776e116 QThread::exec() + 182 7 QtCore 0x000000010776f125 QThreadPrivate::start(void) + 149 8 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 9 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 8: com.apple.CFSocket.private 0 libSystem.B.dylib 0x00007fff878cf932 select$DARWIN_EXTSN + 10 1 com.apple.CoreFoundation 0x00007fff818db468 __CFSocketManager + 824 2 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 3 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 9: 0 libSystem.B.dylib 0x00007fff878a4c0a kevent + 10 1 QtCore 0x0000000107812a2b QKqueueFileSystemWatcherEngine::run() + 155 2 QtCore 0x000000010776f125 QThreadPrivate::start(void) + 149 3 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 4 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 10: 0 libSystem.B.dylib 0x00007fff878cf932 select$DARWIN_EXTSN + 10 1 QtCore 0x0000000107808410 QProcessManager::run() + 96 2 QtCore 0x000000010776f125 QThreadPrivate::start(void) + 149 3 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 4 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 11 Crashed: 0 libMRMLLogic.dylib 0x00000001031d3243 void vtkSetPixels<short>(short&, short const, int, int, unsigned char&, bool) + 35 1 libMRMLLogic.dylib 0x00000001031e0ab9 void vtkReslicePermuteExecute<double>(vtkImageResliceMask, vtkImageData, void, vtkImageData, void, int, int, double () [4], vtkImageData, void) + 1881 2 libMRMLLogic.dylib 0x00000001031d20be vtkImageResliceMask::ThreadedRequestData(vtkInformation, vtkInformationVector, vtkInformationVector, vtkImageData, vtkImageData, int, int) + 1374 3 libvtkFiltering.5.10.dylib 0x000000010af49380 vtkThreadedImageAlgorithmThreadedExecute(void) + 432 4 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 5 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 12: 0 libMRMLLogic.dylib 0x00000001031d3243 void vtkSetPixels<short>(short&, short const, int, int, unsigned char&, bool) + 35 1 libMRMLLogic.dylib 0x00000001031e0ab9 void vtkReslicePermuteExecute<double>(vtkImageResliceMask, vtkImageData, void, vtkImageData, void, int, int, double () [4], vtkImageData, void) + 1881 2 libMRMLLogic.dylib 0x00000001031d20be vtkImageResliceMask::ThreadedRequestData(vtkInformation, vtkInformationVector, vtkInformationVector, vtkImageData, vtkImageData*, int, int) + 1374 3 libvtkFiltering.5.10.dylib 0x000000010af49380 vtkThreadedImageAlgorithmThreadedExecute(void) + 432 4 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 5 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 13: 0 QtCore 0x000000010771e120 QString::toLocal8Bit() const + 0 1 libCTKCore.0.1.dylib 0x00000001044fd938 ctkErrorLogTerminalOutput::output(QString const&) + 200 2 libCTKCore.0.1.dylib 0x00000001044fdc48 ctkErrorLogAbstractMessageHandler::handleMessage(QString const&, ctkErrorLogLevel::LogLevel, QString const&, QString const&) + 488 3 ...ualizationVTKCore.0.1.dylib 0x0000000103367b8d (anonymous namespace)::ctkVTKOutputWindow::DisplayErrorText(char const) + 109 4 libvtkFiltering.5.10.dylib 0x000000010ae0847f vtkImageData::GetScalarPointer(int) + 671 5 libvtkFiltering.5.10.dylib 0x000000010ae048d6 vtkImageData::GetScalarPointerForExtent(int) + 38 6 libMRMLLogic.dylib 0x00000001031d1d7b vtkImageResliceMask::ThreadedRequestData(vtkInformation, vtkInformationVector, vtkInformationVector, vtkImageData, vtkImageData, int, int) + 539 7 libvtkFiltering.5.10.dylib 0x000000010af49380 vtkThreadedImageAlgorithmThreadedExecute(void*) + 432 8 libSystem.B.dylib 0x00007fff878c4fd6 _pthread_start + 331 9 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 14: 0 libSystem.B.dylib 0x00007fff878a60ad _pthread_struct_init + 93 1 libSystem.B.dylib 0x00007fff878c4edd _pthread_start + 82 2 libSystem.B.dylib 0x00007fff878c4e89 thread_start + 13 Thread 15: 0 libSystem.B.dylib 0x00007fff878c4e7c thread_start + 0 Thread 11 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000000000001 rcx: 0x0000000000000000 rdx: 0x0000000000000001 rdi: 0x0000000139112bb8 rsi: 0x0000000000000142 rbp: 0x0000000139112a70 rsp: 0x0000000139112a60 r8: 0x0000000139112d18 r9: 0x0000000000000000 r10: 0x0000000000000001 r11: 0x000000010adb97d0 r12: 0x0000000126ef7170 r13: 0x0000000000000001 r14: 0x0000000000000034 r15: 0x0000000139112c40 rip: 0x00000001031d3243 rfl: 0x0000000000010246 cr2: 0x0000000000000000 Binary Images: 0x100000000 - 0x100021ff7 + 4.2.0 (4.2.0-rc1-2012-10-31) <5CCAFF7F-594E-639A-A0F0-4DDAC29EB258> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/bin/Slicer.app/Contents/MacOS/Slicer 0x100026000 - 0x1000cbfe7 +libqSlicerApp.dylib ??? 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(???) <9A4B933F-5E7C-1E81-F842-27D65A0A0B30> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerCropVolumeModuleLogic.dylib 0x125255000 - 0x12527bff7 +libvtkSlicerCropVolumeModuleMRMLPythonD.dylib ??? (???) <8BA78616-F41D-A3DA-EB6F-AE0348F55393> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerCropVolumeModuleMRMLPythonD.dylib 0x12527f000 - 0x125298fff +libvtkSlicerCropVolumeModuleMRML.dylib ??? (???) <2A57F1B7-CE6E-F20D-EB70-1AE013E58301> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerCropVolumeModuleMRML.dylib 0x12529f000 - 0x1252ccfff +libvtkSlicerVolumesModuleLogicPythonD.dylib ??? (???) <102199BF-66AB-C4DB-DF6F-7B4EEB2B578D> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerVolumesModuleLogicPythonD.dylib 0x1252d1000 - 0x1252f5ff7 +libvtkSlicerVolumesModuleLogic.dylib ??? (???) <622AA827-14A0-D67F-0F8D-B9DC74D91714> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerVolumesModuleLogic.dylib 0x1252fe000 - 0x125323fff +vtkSlicerDataModuleLogicPython.so ??? (???) <56B6FF06-4A84-1790-3797-61295FA43467> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/vtkSlicerDataModuleLogicPython.so 0x125326000 - 0x125351ff7 +libvtkSlicerDataModuleLogicPythonD.dylib ??? (???) <9B78B6DD-9DE3-B4A4-49EE-213828B0A479> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDataModuleLogicPythonD.dylib 0x125355000 - 0x125373fff +libvtkSlicerDataModuleLogic.dylib ??? (???) <458B9C46-58D9-1306-BA2D-F54350A70548> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDataModuleLogic.dylib 0x125378000 - 0x12539dfff +vtkSlicerDoubleArraysModuleLogicPython.so ??? (???) <E20BADB1-78D1-0FEA-63AC-C5598C036A52> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/vtkSlicerDoubleArraysModuleLogicPython.so 0x1253a0000 - 0x1253cafff +libvtkSlicerDoubleArraysModuleLogicPythonD.dylib ??? (???) <59F0217B-3BDA-2CAB-AD42-1736B55A0626> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDoubleArraysModuleLogicPythonD.dylib 0x1253ce000 - 0x1253ecfff +libvtkSlicerDoubleArraysModuleLogic.dylib ??? (???) <F5198D29-1F04-7AF0-4017-1D76D9330A79> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerDoubleArraysModuleLogic.dylib 0x1253f1000 - 0x125417fff +vtkSlicerEMSegmentModuleLogicPython.so ??? (???) <8A3C4CAB-7E18-F0CE-34AE-55FF808891C8> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/vtkSlicerEMSegmentModuleLogicPython.so 0x12541b000 - 0x1254d2ff7 +libvtkSlicerEMSegmentModuleLogicPythonD.dylib ??? (???) <ABFB55F6-CAA2-B27D-7922-20F1F7C4075B> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerEMSegmentModuleLogicPythonD.dylib 0x125517000 - 0x1259e5ff7 +libvtkSlicerEMSegmentModuleLogic.dylib ??? (???) <16EA279F-C091-08A8-5CD8-04319178AF38> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/lib/Slicer-4.2/qt-loadable-modules/libvtkSlicerEMSegmentModuleLogic.dylib 0x125bc9000 - 0x125beefff +vtkSlicerFetchMIModuleLogicPython.so ??? (???) <7FC7247F-68EB-D180-C4A7-06A3E4465353> /Users/fedorov/github/Slicer-Superbuild-Release/Slicer-build/li

nicole 2012-11-01 06:47 administrator ~0006998	I had to disable rulers and fiducials in the lightbox/compare views since I ran out of time to debug them: http://na-mic.org/Bug/view.php?id=1690 You can still place them, they just don't show up in 2d. I have an idea how to fix them, but it will require a lot of coding and testing and I didn't want to introduce an instability right before the release was cut. We can retarget bug 1690 for 4.2.1 (with the understanding that I have 7 days that I'll be in the office before 4.2.1 is cut) but I was hoping to postpone it to 4.3 when I've had a chance to integrate the module re-write.

jcfr 2012-11-01 07:21 administrator ~0007003	Since 4.2.1 will be a patch release, only bug fixes should be incorporated. It means no major redesign / refactoring. I still think we should address the bug independently of the module rewrite :)

nicole 2012-11-01 09:24 administrator ~0007009	Fixing the annotations in light box mode will probably be a major refactoring.

millerjv 2012-11-01 09:35 developer ~0007011	I am not familiar with the issues related to the annotations not working with the light box. It should just boil down to consistently using the methods to convert to/from XYZ and using the Z component properly to select the lightbox frame. But I could envision a refactoring of APIs to pass along the appropriate information (k or Z).

pieper 2012-11-02 05:46 administrator ~0007017	See https://github.com/commontk/CTK/pull/246

jcfr 2012-11-02 06:28 administrator ~0007018	Yeahh :) Tried to run the self test 10 times in a row and no crash :) Just integrated the topic. See https://github.com/commontk/CTK/commit/6cee9c690decaccfda16dc5cb50c237f0b6a3384

pieper 2012-11-02 15:43 administrator ~0007034	Andrey: - I cannot replicate the issue with the quantitative view and the Editor. Can you test it with the latest patched version of CTK?

fedorov 2012-11-02 19:15 developer ~0007035	Steve, I confirm I cannot reproduce the crash with the Editor + Quantitative layout. But with the prostate demo, I am still getting a crash after switching scene views several times (<10). Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 libCTKWidgets.0.1.dylib 0x0000000100f3c5f8 ctkLayoutManager::setupView(QDomElement, QWidget) + 24 1 libqMRMLWidgets.dylib 0x00000001004da76c qMRMLLayoutManager::setupView(QDomElement, QWidget) + 60 2 libCTKWidgets.0.1.dylib 0x0000000100f3b0b0 ctkLayoutManager::widgetItemFromXML(QDomElement) + 112 3 libCTKWidgets.0.1.dylib 0x0000000100f3e3bf ctkLayoutManager::processElement(QDomElement) + 367 4 libCTKWidgets.0.1.dylib 0x0000000100f3d559 ctkLayoutManager::processItemElement(QDomElement, QLayoutItem) + 761 5 libCTKWidgets.0.1.dylib 0x0000000100f3d8a8 ctkLayoutManager::processLayoutElement(QDomElement) + 280 6 libCTKWidgets.0.1.dylib 0x0000000100f3e301 ctkLayoutManager::processElement(QDomElement) + 177 7 libCTKWidgets.0.1.dylib 0x0000000100f3d559 ctkLayoutManager::processItemElement(QDomElement, QLayoutItem) + 761 8 libCTKWidgets.0.1.dylib 0x0000000100f3d8a8 ctkLayoutManager::processLayoutElement(QDomElement) + 280 9 libCTKWidgets.0.1.dylib 0x0000000100f3e301 ctkLayoutManager::processElement(QDomElement) + 177 10 libCTKWidgets.0.1.dylib 0x0000000100f3c125 ctkLayoutManager::setupLayout() + 437 11 libCTKWidgets.0.1.dylib 0x0000000100f3bdce ctkLayoutManager::refresh() + 94 12 libqMRMLWidgets.dylib 0x00000001004da8c3 qMRMLLayoutManagerPrivate::updateLayoutInternal() + 163 13 libqMRMLWidgets.dylib 0x000000010053f17e qMRMLLayoutManagerPrivate::qt_metacall(QMetaObject::Call, int, void) + 238 14 QtCore 0x00000001077419d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 15 ...ualizationVTKCore.0.1.dylib 0x0000000103374ed5 ctkVTKConnection::emitExecute(vtkObject, void, unsigned long, void) + 85 16 ...ualizationVTKCore.0.1.dylib 0x00000001033669f8 ctkVTKConnectionPrivate::execute(vtkObject, unsigned long, void, void) + 488 17 libvtkCommon.5.10.dylib 0x000000010b166551 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 18 libMRMLCore.dylib 0x00000001055325e3 vtkEventBroker::InvokeObservation(vtkObservation, void) + 307 19 libMRMLCore.dylib 0x0000000105532b5f vtkEventBroker::ProcessEvent(vtkObservation, vtkObject, unsigned long, void) + 767 20 libvtkCommon.5.10.dylib 0x000000010b166551 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 21 libvtkCommon.5.10.dylib 0x000000010b14f7f7 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 1303 22 libMRMLCLI.dylib 0x00000001054c2712 vtkMRMLNode::InvokePendingModifiedEvent() + 34 23 libMRMLLogic.dylib 0x00000001031a7a3f vtkMRMLLayoutLogic::SetLayoutNode(vtkMRMLLayoutNode) + 111 24 libMRMLLogic.dylib 0x00000001031ad32b vtkMRMLLayoutLogic::UpdateLayoutNode() + 251 25 libMRMLLogic.dylib 0x0000000103198c97 vtkMRMLAbstractLogic::MRMLSceneCallback(vtkObject, unsigned long, void, void) + 103 26 libvtkCommon.5.10.dylib 0x000000010b166551 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 27 libMRMLCore.dylib 0x00000001055325e3 vtkEventBroker::InvokeObservation(vtkObservation, void) + 307 28 libMRMLCore.dylib 0x0000000105532b5f vtkEventBroker::ProcessEvent(vtkObservation, vtkObject, unsigned long, void) + 767 29 libvtkCommon.5.10.dylib 0x000000010b166551 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 30 libvtkCommon.5.10.dylib 0x000000010b14f7f7 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 1303 31 libMRMLCore.dylib 0x00000001055f8087 vtkMRMLScene::EndState(unsigned long) + 103 32 libMRMLCore.dylib 0x000000010560c5fe vtkMRMLSceneViewNode::RestoreScene() + 3038 33 libqMRMLWidgets.dylib 0x000000010054243c qMRMLSceneViewMenuPrivate::qt_metacall(QMetaObject::Call, int, void) + 284 34 QtCore 0x00000001077419d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 35 QtCore 0x0000000107839319 QSignalMapper::mapped(QString const&) + 41 36 QtCore 0x000000010783978f QSignalMapper::map(QObject) + 159 37 QtCore 0x0000000107839e36 QSignalMapper::qt_metacall(QMetaObject::Call, int, void) + 182 38 QtCore 0x00000001077419d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 39 QtGui 0x0000000106ab5a11 QAction::triggered(bool) + 49 40 QtGui 0x0000000106ab6da4 QAction::activate(QAction::ActionEvent) + 180 41 QtGui 0x0000000106ebff20 QMenuPrivate::activateCausedStack(QList<QPointer<QWidget> > const&, QAction, QAction::ActionEvent, bool) + 352 42 QtGui 0x0000000106ec55f4 QMenuPrivate::activateAction(QAction, QAction::ActionEvent, bool) + 324 43 QtGui 0x0000000106b12970 QWidget::event(QEvent) + 2384 44 QtGui 0x0000000106ec503b QMenu::event(QEvent) + 107 45 QtGui 0x0000000106abb87d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 46 QtGui 0x0000000106ac2040 QApplication::notify(QObject, QEvent) + 2416 47 QtCore 0x000000010773b23c QCoreApplication::notifyInternal(QObject, QEvent) + 124 48 QtGui 0x0000000106abad7c qt_sendSpontaneousEvent(QObject, QEvent) + 44 49 QtGui 0x0000000106a7249d qt_mac_handleMouseEvent(void, void, QEvent::Type, Qt::MouseButton) + 2269 50 QtGui 0x0000000106a62be6 -[QCocoaView mouseUp:] + 22 51 com.apple.AppKit 0x00007fff82ece431 -[NSWindow sendEvent:] + 5547 52 QtGui 0x0000000106a60ce1 -[QCocoaPanel sendEvent:] + 241 53 com.apple.AppKit 0x00007fff82e03afa -[NSApplication sendEvent:] + 4719 54 QtGui 0x0000000106a6d62a -[QNSApplication sendEvent:] + 74 55 com.apple.AppKit 0x00007fff82d9a6de -[NSApplication run] + 474 56 QtGui 0x0000000106a77324 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588 57 QtCore 0x0000000107825ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 58 QtCore 0x00000001078261f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 59 QtGui 0x0000000106ec2d14 QMenu::exec(QPoint const&, QAction) + 116 60 QtGui 0x0000000106f03001 QToolButtonPrivate::popupTimerDone() + 1025 61 QtGui 0x0000000106f0398a QToolButton::qt_metacall(QMetaObject::Call, int, void) + 442 62 QtCore 0x00000001077419d6 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 63 QtGui 0x0000000106e3a1c3 QAbstractButtonPrivate::emitPressed() + 51 64 QtGui 0x0000000106e3a38b QAbstractButton::mousePressEvent(QMouseEvent) + 123 65 QtGui 0x0000000106f03e28 QToolButton::mousePressEvent(QMouseEvent) + 104 66 QtGui 0x0000000106b12c24 QWidget::event(QEvent) + 3076 67 QtGui 0x0000000106e3a5e8 QAbstractButton::event(QEvent) + 40 68 QtGui 0x0000000106f03daf QToolButton::event(QEvent) + 63 69 QtGui 0x0000000106abb87d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 70 QtGui 0x0000000106ac2040 QApplication::notify(QObject, QEvent) + 2416 71 QtCore 0x000000010773b23c QCoreApplication::notifyInternal(QObject, QEvent) + 124 72 QtGui 0x0000000106abad7c qt_sendSpontaneousEvent(QObject, QEvent) + 44 73 QtGui 0x0000000106a7249d qt_mac_handleMouseEvent(void, void*, QEvent::Type, Qt::MouseButton) + 2269 74 com.apple.AppKit 0x00007fff82ece3a7 -[NSWindow sendEvent:] + 5409 75 QtGui 0x0000000106a69fb1 -[QCocoaWindow sendEvent:] + 241 76 com.apple.AppKit 0x00007fff82e03afa -[NSApplication sendEvent:] + 4719 77 QtGui 0x0000000106a6d62a -[QNSApplication sendEvent:] + 74 78 com.apple.AppKit 0x00007fff82d9a6de -[NSApplication run] + 474 79 QtGui 0x0000000106a77324 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588 80 QtCore 0x0000000107825ed4 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 81 QtCore 0x00000001078261f4 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 82 QtCore 0x00000001078275aa QCoreApplication::exec() + 186 83 0x000000010001faa8 main + 3016 84 0x000000010001ed68 start + 52

pieper 2012-11-03 05:39 administrator ~0007036	It looks like we need a self test for this!

fedorov 2012-11-03 10:10 developer ~0007037	Steve, I will work on this tonight. I guess I can pack everything into MRB, upload to midas, then in the test download and import into Slicer, and switch between the scene views. I will update the issue when this is done or if I am stuck.

fedorov 2012-11-03 14:26 developer ~0007038	Self-test is available here: https://gist.github.com/4009105 I didn't not have courage to commit it to trunk, since I think JC said NO COMMITS. If higher powers authorize this, I will add the test to the trunk. Also, the crash can be reproduced consistently (on my mac and Slicer binary build in release mode, r21312) by loading the scene and running the following code snippet: svns = slicer.mrmlScene.GetNodesByClass('vtkMRMLSceneViewNode') svns.SetReferenceCount(svns.GetReferenceCount()-1) svs = [] for i in range(svns.GetNumberOfItems()): svs.append(svns.GetItemAsObject(i)) for i in range(len(svs)): svs[i % 2].RestoreScene()

millerjv 2012-11-03 17:03 developer ~0007039	I am a bit concerned with this snippet modifying the reference count. I think this code decrements the reference count twice - once implicitly by python. But I am guessing that it crashes before python really releases its reference.

fedorov 2012-11-03 17:50 developer ~0007040	Jim, I thought we were instructed to decrement reference count manually for this call. But in any case, the crash seem to give the same stack trace as the one that I have while switching scene views manually.

pieper 2012-11-04 04:58 administrator ~0007041	I suggest using slicer.util.getNodes('vtkMRMLSceneViewNode*') at this point to avoid the vtkCollection reference count issue. I don't think this is the source of the underlying crash though since Andrey was able generate the crash manually. Also, the trunk should now be considered 4.2.1, so checking in the new test at this point is a good thing. Jc didn't explicitly release his NO COMMIT block, but it was implicitly released when he announced the builds (which are now live on slicer.org).

fedorov 2012-11-04 17:07 developer ~0007043	Steve, I fixed getNodes, and added the self-test in r21313.

pieper 2012-11-05 13:20 administrator ~0007064	Commit 21317: http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=21317 avoids the crash reported here in comment 6994 above http://www.na-mic.org/Bug/view.php?id=2512#c6994

pieper 2012-11-06 07:37 administrator ~0007072	Now the test is getting past the earlier crash and I can restore scene views interactively. But the application crashes on exit after running the test.

2012-11-06 07:38	Screen Shot 2012-11-06 at 12.38.22 PM.png (743,854 bytes) Screen Shot 2012-11-06 at 12.38.22 PM.png (743,854 bytes)

pieper 2012-11-06 07:40 administrator ~0007073	Stack trace of current crash is shown in the attached screenshot. Note that it happens when deleting the scene that is a member of the scene view node. When the scene view node is destructed, the ReferencingNodes member is being cleared but the local variable 'node' is a bad pointer as can be seen in the window at the bottom.

pieper 2012-11-06 08:32 administrator ~0007074	I can also reproduce this with the latest nightly build. Download the prostate demo case from the link below. Change back and forth among scene views. The stack trace below is generated when exiting slicer. http://slicer.kitware.com/midas3/download?items=10697 Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 ??? 000000000000000000 0 + 0 1 libMRMLCore.dylib 0x0000000105566fa3 vtkMRMLScene::RemoveNodeReferences(vtkMRMLNode) + 259 2 libMRMLCore.dylib 0x000000010556b3f3 vtkMRMLScene::RemoveNode(vtkMRMLNode) + 67 3 libMRMLCore.dylib 0x000000010556b822 vtkMRMLScene::Clear(int) + 98 4 libvtkCommon.5.10.dylib 0x000000010b0eb881 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 5 libvtkCommon.5.10.dylib 0x000000010b0d4b77 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 1303 6 libvtkCommon.5.10.dylib 0x000000010b18b8f8 vtkObject::UnRegisterInternal(vtkObjectBase, int) + 104 7 libMRMLCore.dylib 0x00000001055769ea vtkMRMLSceneViewNode::~vtkMRMLSceneViewNode() + 42 8 libMRMLCore.dylib 0x000000010556b492 vtkMRMLScene::RemoveNode(vtkMRMLNode) + 226 9 libMRMLCore.dylib 0x000000010556b822 vtkMRMLScene::Clear(int) + 98 10 libvtkCommon.5.10.dylib 0x000000010b0eb881 vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 33 11 libvtkCommon.5.10.dylib 0x000000010b0d4b77 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 1303 12 libvtkCommon.5.10.dylib 0x000000010b18b8f8 vtkObject::UnRegisterInternal(vtkObjectBase, int) + 104 13 libMRMLLogic.dylib 0x00000001030fd556 vtkMRMLAbstractLogic::SetMRMLScene(vtkMRMLScene) + 54 14 libMRMLLogic.dylib 0x00000001030fdf04 vtkMRMLAbstractLogic::~vtkMRMLAbstractLogic() + 36 15 libSlicerBaseLogic.dylib 0x0000000102fcf7e0 vtkSlicerApplicationLogic::~vtkSlicerApplicationLogic() + 1280 16 libMRMLDisplayableManager.dylib 0x000000010309dacb vtkMRMLDisplayableManagerFactory::~vtkMRMLDisplayableManagerFactory() + 59 17 libMRMLDisplayableManager.dylib 0x000000010309e78b vtkMRMLThreeDViewDisplayableManagerFactory::~vtkMRMLThreeDViewDisplayableManagerFactory() + 27 18 libMRMLDisplayableManager.dylib 0x00000001030a61ed tcf_1 + 45 19 libsystem_c.dylib 0x00007fff86651307 cxa_finalize + 200 20 libsystem_c.dylib 0x00007fff86652f57 exit + 15 21 0x000000010001fd6f start + 59

alexy 2012-11-09 07:54 developer ~0007135	It seems that extra Delete() calls are coming from python. After the 'Test passes' message is printed the following stack traces happening, one of them causes the crash. It seems that having SceneView nodes variables in python causing the Delete to be called on them. Steve, please take a look if this analysis is correct. MRMLCore.dll!vtkMRMLViewNode::Delete() Line 38 C++ MRMLCore.dll!vtkMRMLScene::~vtkMRMLScene() Line 393 C++ MRMLCore.dll!vtkMRMLScene::`vector deleting destructor'() + 0x7f bytes C++ vtkCommon.dll!vtkObjectBase::UnRegisterInternal(vtkObjectBase * __formal=0x0000000000000000, int check=0) Line 286 + 0x31 bytes C++ vtkCommon.dll!vtkObject::UnRegisterInternal(vtkObjectBase * o=0x0000000000000000, int check=0) Line 886 C++ vtkCommon.dll!vtkObjectBase::UnRegister(vtkObjectBase * o=0x0000000000000000) Line 190 C++ vtkCommon.dll!vtkObjectBase::Delete() Line 135 C++ MRMLCore.dll!vtkMRMLSceneViewNode::~vtkMRMLSceneViewNode() Line 56 C++ MRMLCore.dll!vtkMRMLSceneViewNode::`vector deleting destructor'() + 0x7f bytes C++ vtkCommon.dll!vtkObjectBase::UnRegisterInternal(vtkObjectBase * __formal=0x0000000000000000, int check=0) Line 286 + 0x31 bytes C++ vtkCommon.dll!vtkObject::UnRegisterInternal(vtkObjectBase * o=0x0000000000000000, int check=0) Line 886 C++ vtkCommon.dll!vtkObjectBase::UnRegister(vtkObjectBase * o=0x0000000000000000) Line 190 C++ vtkCommon.dll!vtkSmartPointerBase::~vtkSmartPointerBase() Line 64 C++ vtkPythonCore.dll!vtkPythonUtil::RemoveObjectFromMap(_object * obj=0x0000000011875638) Line 268 C++ vtkPythonCore.dll!PyVTKObject_Delete(_object * op=0x0000000011875638) Line 285 C++ `MRMLCore.dll!vtkMRMLScene::RemoveNodeReferences(vtkMRMLNode * n=0x000000001a6203b0) Line 1501 + 0x13 bytes C++ MRMLCore.dll!vtkMRMLScene::RemoveNode(vtkMRMLNode * n=0x000000001a6203b0) Line 1411 C++ MRMLCore.dll!vtkMRMLScene::Clear(int removeSingletons=1) Line 466 C++` MRMLCore.dll!vtkMRMLSceneViewNode::~vtkMRMLSceneViewNode() Line 55 C++ MRMLCore.dll!vtkMRMLSceneViewNode::`vector deleting destructor'() + 0x7f bytes C++ vtkCommon.dll!vtkObjectBase::UnRegisterInternal(vtkObjectBase __formal=0x0000000000000000, int check=0) Line 286 + 0x31 bytes C++ vtkCommon.dll!vtkObject::UnRegisterInternal(vtkObjectBase o=0x0000000000000000, int check=0) Line 886 C++ vtkCommon.dll!vtkObjectBase::UnRegister(vtkObjectBase o=0x0000000000000000) Line 190 C++ vtkCommon.dll!vtkSmartPointerBase::~vtkSmartPointerBase() Line 64 C++ vtkPythonCore.dll!vtkPythonUtil::RemoveObjectFromMap(_object obj=0x0000000011875728) Line 268 C++ vtkPythonCore.dll!PyVTKObject_Delete(_object * op=0x0000000011875728) Line 285 C++

jcfr 2012-11-09 10:48 administrator ~0007139 Last edited: 2012-11-09 10:49	Are these two different stack traces ? Creating a small python script or scripted module allow to reproduce the issue would be helpful.

pieper 2012-11-14 06:33 administrator ~0007209	This is the stack trace for the repeatable crash after the test is finished. The ReferencingNodes vector of pointers is pointing to garbage, which indicates that is it not correctly managed somewhere along the line. Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libMRMLCore.dylib 0x0000000117088ca6 vtkMRMLScene::RemoveNodeReferences(vtkMRMLNode) + 1058 (vtkMRMLScene.cxx:1501) 1 libMRMLCore.dylib 0x000000011708f7d2 vtkMRMLScene::RemoveNode(vtkMRMLNode) + 2584 (vtkMRMLScene.cxx:1411) 2 libMRMLCore.dylib 0x0000000117090084 vtkMRMLScene::Clear(int) + 180 (vtkMRMLScene.cxx:463) 3 libMRMLCore.dylib 0x000000011709020d vtkMRMLScene::SceneCallback(vtkObject, unsigned long, void, void) + 75 (vtkMRMLScene.cxx:438) 4 libvtkCommon.5.10.dylib 0x000000012337716a vtkCallbackCommand::Execute(vtkObject, unsigned long, void) + 82 (vtkCallbackCommand.cxx:43) 5 libvtkCommon.5.10.dylib 0x00000001234b2599 vtkSubjectHelper::InvokeEvent(unsigned long, void, vtkObject) + 2579 (vtkObject.cxx:602) 6 libvtkCommon.5.10.dylib 0x00000001234b2785 vtkObject::InvokeEvent(unsigned long, void) + 73 (vtkObject.cxx:770) 7 libvtkCommon.5.10.dylib 0x00000001234b2ce1 vtkObject::UnRegisterInternal(vtkObjectBase, int) + 1343 (vtkObject.cxx:881) 8 libvtkCommon.5.10.dylib 0x00000001234b624d vtkObjectBase::UnRegister(vtkObjectBase) + 47 (vtkObjectBase.cxx:190) 9 libvtkCommon.5.10.dylib 0x00000001234b6191 vtkObjectBase::Delete() + 45 (vtkObjectBase.cxx:135) 10 libMRMLCore.dylib 0x00000001170b989b vtkMRMLSceneViewNode::~vtkMRMLSceneViewNode() + 115 (vtkMRMLSceneViewNode.cxx:54) 11 libvtkCommon.5.10.dylib 0x00000001234b6432 vtkObjectBase::UnRegisterInternal(vtkObjectBase, int) + 288 (vtkObjectBase.cxx:286) 12 libvtkCommon.5.10.dylib 0x00000001234b2d03 vtkObject::UnRegisterInternal(vtkObjectBase, int) + 1377 (vtkObject.cxx:886) 13 libvtkCommon.5.10.dylib 0x00000001234b624d vtkObjectBase::UnRegister(vtkObjectBase) + 47 (vtkObjectBase.cxx:190) 14 libvtkCommon.5.10.dylib 0x000000012352d537 vtkSmartPointerBase::~vtkSmartPointerBase() + 77 (vtkSmartPointerBase.cxx:64) 15 libvtkPythonCore.5.10.dylib 0x0000000116ad5c93 vtkPythonUtil::RemoveObjectFromMap(_object) + 279 (vtkPythonUtil.cxx:265) 16 libvtkPythonCore.5.10.dylib 0x0000000116ae5866 _ZL18PyVTKObject_DeleteP7_object + 70 (PyVTKObject.cxx:285) 17 libpython2.6.dylib 0x0000000116b7a345 dict_dealloc + 149 (dictobject.c:911) 18 libpython2.6.dylib 0x0000000116b685c4 frame_dealloc + 116 (frameobject.c:420) 19 libpython2.6.dylib 0x0000000116bd70f5 fast_function + 213 (ceval.c:3838) 20 libpython2.6.dylib 0x0000000116bd3e89 PyEval_EvalFrameEx + 17017 (ceval.c:3771) 21 libpython2.6.dylib 0x0000000116bd70d3 fast_function + 179 (ceval.c:3836) 22 libpython2.6.dylib 0x0000000116bd3e89 PyEval_EvalFrameEx + 17017 (ceval.c:3771) 23 libpython2.6.dylib 0x0000000116bd6f9e PyEval_EvalCodeEx + 2126 (ceval.c:3000) 24 libpython2.6.dylib 0x0000000116b69b0a function_call + 394 (funcobject.c:524) 25 libpython2.6.dylib 0x0000000116b42481 PyObject_Call + 97 (abstract.c:2492) 26 libpython2.6.dylib 0x0000000116b5431f instancemethod_call + 495 (classobject.c:2580) 27 libpython2.6.dylib 0x0000000116b42481 PyObject_Call + 97 (abstract.c:2492) 28 libpython2.6.dylib 0x0000000116bcf144 PyEval_CallObjectWithKeywords + 180 (ceval.c:3620) 29 libPythonQt.dylib 0x0000000113eddb75 PythonQtSignalTarget::call(_object, PythonQtMethodInfo const, void, bool) + 595 (PythonQtSignalReceiver.cpp:124) 30 libPythonQt.dylib 0x0000000113eddc65 PythonQtSignalTarget::call(void) const + 91 (PythonQtSignalReceiver.cpp:55) 31 libPythonQt.dylib 0x0000000113edcbb2 PythonQtSignalReceiver::qt_metacall(QMetaObject::Call, int, void) + 208 (PythonQtSignalReceiver.cpp:259) 32 QtCore 0x000000011ac85e26 QMetaObject::activate(QObject, QMetaObject const, int, void) + 710 33 QtGui 0x000000011a622831 QAbstractButton::clicked(bool) + 49 34 QtGui 0x000000011a34d7d0 QAbstractButtonPrivate::emitClicked() + 64 35 QtGui 0x000000011a34ea0a QAbstractButtonPrivate::click() + 154 36 QtGui 0x000000011a34ec61 QAbstractButton::mouseReleaseEvent(QMouseEvent) + 113 37 libPythonQt.dylib 0x000000011421ccde PythonQtShell_QPushButton::mouseReleaseEvent(QMouseEvent) + 562 (com_trolltech_qt_gui6.cpp:6232) 38 QtGui 0x000000011a01d133 QWidget::event(QEvent) + 2371 39 QtGui 0x000000011a34db08 QAbstractButton::event(QEvent) + 40 40 QtGui 0x000000011a3e8645 QPushButton::event(QEvent) + 69 41 libPythonQt.dylib 0x000000011421b46c PythonQtShell_QPushButton::event(QEvent) + 766 (com_trolltech_qt_gui6.cpp:5863) 42 QtGui 0x0000000119fc215d QApplicationPrivate::notify_helper(QObject, QEvent) + 189 43 QtGui 0x0000000119fc9e90 QApplication::notify(QObject, QEvent) + 7776 44 QtCore 0x000000011ac7f4dc QCoreApplication::notifyInternal(QObject, QEvent) + 124 45 QtGui 0x0000000119fc21fc qt_sendSpontaneousEvent(QObject, QEvent) + 44 46 QtGui 0x0000000119f782ed qt_mac_handleMouseEvent(void, void, QEvent::Type, Qt::MouseButton) + 2269 47 QtGui 0x0000000119f68a66 -[QCocoaView mouseUp:] + 22 48 com.apple.AppKit 0x00000001240f9d5e -[NSWindow sendEvent:] + 6504 49 QtGui 0x0000000119f6fe01 -[QCocoaWindow sendEvent:] + 241 50 com.apple.AppKit 0x00000001240933a5 -[NSApplication sendEvent:] + 5593 51 QtGui 0x0000000119f7347a -[QNSApplication sendEvent:] + 74 52 com.apple.AppKit 0x0000000124029a0e -[NSApplication run] + 555 53 QtGui 0x0000000119f7d174 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588 54 QtCore 0x000000011ad6ba34 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68 55 QtCore 0x000000011ad6bd54 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180 56 QtCore 0x000000011ad6d37c QCoreApplication::exec() + 188 57 0x000000010efd5eca (anonymous namespace)::SlicerAppMain(int, char**) + 5994 (Main.cxx:183) 58 0x000000010efd429e main + 46 (Main.cxx:215) 59 0x000000010efd4264 start + 52

pieper 2012-11-15 12:55 administrator ~0007253	Crash on exit and leaks fixed in 21422.

jcfr 2012-11-15 13:32 administrator ~0007257	When running the tests .. there are still some errors and warnings. We should probably keep the issue open. Let me know what you think. ERROR: In /home/jchris/Projects/Slicer4/Libs/MRML/Core/vtkMRMLLabelMapVolumeDisplayNode.cxx, line 112 612: vtkMRMLLabelMapVolumeDisplayNode (0x6e6a6f0): vtkMRMLLabelMapVolumeDisplayNode: Warning, the color table node: vtkMRMLColorTableNodeFileAbdominalAtlasColors.ctbl can't be found 612: ERROR: In /home/jchris/Projects/Slicer4/Libs/MRML/Core/vtkMRMLModelStorageNode.cxx, line 114 612: vtkMRMLModelStorageNode (0x113abcf0): ReadDataInternal: model file '/tmp/__BundleLoadTemp2012-11-15_18+29+45.443/BrainAtlas2012/Data/Model_4032_right_tensor_veli_palatini.vtk' not found. 612: ERROR: In /home/jchris/Projects/Slicer4/Libs/MRML/Core/vtkMRMLTransformStorageNode.cxx, line 155 612: vtkMRMLTransformStorageNode (0x6da9850): ITK exception caught reading transform file: /tmp/BundleLoadTemp2012-11-15_18+29+45.443/BrainAtlas2012/Data/LinearTransform_3.tfm 612: 612: itk::ExceptionObject (0xd2076d0) 612: Location: "virtual void itk::TxtTransformIO::Read()" 612: File: /home/jchris/Projects/Slicer4-Superbuild-Debug/ITKv3/Code/Review/itkTxtTransformIO.cxx 612: Line: 89 612: Description: itk::ERROR: TxtTransformIO(0xd207730): The file could not be opened for read access 612: Filename: "/tmp/BundleLoadTemp2012-11-15_18+29+45.443/BrainAtlas2012/Data/LinearTransform_3.tfm" Also some warnings: 612: Warning: In /home/jchris/Projects/Slicer4/Libs/MRML/Core/vtkMRMLScene.cxx, line 3065 612: vtkMRMLScene (0x7ea6ce0): There is a danger here. What if AddNode or RemoveNode were called prior, the NodeIDsMTime would be in sync without having the map in sync.

pieper 2012-11-16 02:13 administrator ~0007272	Yes, there are warnings and error messages - but many are probably false alarms and do not lead to a crash or block. I suggest we start new issues related to them since this is already a long bug report.

jcfr 2012-11-16 04:38 administrator ~0007275	Make sens. Created issue 0002764 and 0002765

Date Modified	Username	Field	Change
2012-09-13 11:46	jcfr	New Issue
2012-09-13 12:00	jcfr	Target Version	=> Slicer 4.2.0 - coming release
2012-09-13 12:04	jcfr	Status	new => assigned
2012-09-13 12:04	jcfr	Assigned To	=> millerjv
2012-10-30 12:30	jcfr	Note Added: 0006937
2012-10-31 11:24	millerjv	Note Added: 0006979
2012-10-31 12:53	fedorov	Note Added: 0006994
2012-10-31 13:01	jcfr	Target Version	Slicer 4.2.0 - coming release => Slicer 4.2.1
2012-10-31 14:08	fedorov	Note Added: 0006995
2012-11-01 06:01	pieper	Note Added: 0006996
2012-11-01 06:19	fedorov	Note Added: 0006997
2012-11-01 06:47	nicole	Note Added: 0006998
2012-11-01 07:21	jcfr	Note Added: 0007003
2012-11-01 09:10	pieper	Severity	minor => crash
2012-11-01 09:24	nicole	Note Added: 0007009
2012-11-01 09:35	millerjv	Note Added: 0007011
2012-11-02 05:46	pieper	Note Added: 0007017
2012-11-02 06:28	jcfr	Note Added: 0007018
2012-11-02 15:43	pieper	Note Added: 0007034
2012-11-02 19:15	fedorov	Note Added: 0007035
2012-11-03 05:39	pieper	Note Added: 0007036
2012-11-03 10:10	fedorov	Note Added: 0007037
2012-11-03 14:26	fedorov	Note Added: 0007038
2012-11-03 17:03	millerjv	Note Added: 0007039
2012-11-03 17:50	fedorov	Note Added: 0007040
2012-11-04 04:58	pieper	Note Added: 0007041
2012-11-04 17:07	fedorov	Note Added: 0007043
2012-11-05 02:51	pieper	Relationship added	related to 0002718
2012-11-05 13:20	pieper	Note Added: 0007064
2012-11-06 07:37	pieper	Note Added: 0007072
2012-11-06 07:38	pieper	File Added: Screen Shot 2012-11-06 at 12.38.22 PM.png
2012-11-06 07:40	pieper	Note Added: 0007073
2012-11-06 07:41	pieper	Assigned To	millerjv => alexy
2012-11-06 08:32	pieper	Note Added: 0007074
2012-11-09 07:54	alexy	Note Added: 0007135
2012-11-09 07:54	alexy	Assigned To	alexy => pieper
2012-11-09 10:48	jcfr	Note Added: 0007139
2012-11-09 10:49	jcfr	Note Edited: 0007139
2012-11-14 06:16	pieper	Relationship added	related to 0002513
2012-11-14 06:33	pieper	Note Added: 0007209
2012-11-15 12:55	pieper	Note Added: 0007253
2012-11-15 12:55	pieper	Status	assigned => resolved
2012-11-15 12:55	pieper	Fixed in Version	=> Slicer 4.2.1
2012-11-15 12:55	pieper	Resolution	open => fixed
2012-11-15 13:32	jcfr	Note Added: 0007257
2012-11-16 02:13	pieper	Note Added: 0007272
2012-11-16 04:36	jcfr	Relationship added	related to 0002764
2012-11-16 04:38	jcfr	Relationship added	related to 0002765
2012-11-16 04:38	jcfr	Note Added: 0007275
2013-07-08 09:57	pieper	Status	resolved => closed

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Issue History

related to	0002718	assigned	pieper	Memory leaks when returning vtkCollection objects to Python as return value
related to	0002513	closed	finetjul	Tutorial 11 - Brain Atlas
related to	0002764	closed	alexy	Running test AtlasTest lead to some suspiscious warning "There is a danger here"
related to	0002765	closed	pieper	Running test AtlasTest lead to some Error related to MRB