| Description | running Slicer 4.1 stable on win64 windows7, 16GB of memory
run em segment with atlas, brain segmentation task on the brain mri sample data
following error log:
TCLAuto: Minimum: 0.0
TCLAuto: Check for Class WM
TCLAuto: Atlas : atlas_whitematter(Aligned)
TCLAuto: Scans : MR-head_pos(Aligned)_N4corrected
TCLAuto: LogGauss : 1
TCLAuto: CutOffProb : 80 (Absolut) -- 95.20 % (Percent)
TCLAuto: MaxProbVal : 82
TCLAuto: Samples : 60566
TCLAuto: GreyExtrima: (14, 97)
TCLAuto: Mean : 4.409
TCLAuto: Covariance : 0.006
::::LOGMEAN Float:4.40915
EMSegmentPy 04/25/2012 15:56:11: Pre-processing completed successfully
onEntryInternal - entering input from 7. Specify Intensity Distributions
processingAfterOnEntry
goForward - posting ValidationTransition
attemptToGoToNextStep - Attempting to go to the next step
validateInternal - validating input from 7. Specify Intensity Distributions
goToNextStepAfterSuccessfulValidation - Calidation succeeded
goToNextStepAfterSuccessfulValidation - Posting TransitionToNextStep
performTransitionBetweenSteps - Performing transition between steps
onExitInternal - exiting 7. Specify Intensity Distributions
onEntryInternal - entering input from 8. Edit Node-based Parameters
processingAfterOnEntry
goForward - posting ValidationTransition
attemptToGoToNextStep - Attempting to go to the next step
validateInternal - validating input from 8. Edit Node-based Parameters
goToNextStepAfterSuccessfulValidation - Calidation succeeded
goToNextStepAfterSuccessfulValidation - Posting TransitionToNextStep
performTransitionBetweenSteps - Performing transition between steps
onExitInternal - exiting 8. Edit Node-based Parameters
onEntryInternal - entering input from 9. Define Miscellaneous Parameters
processingAfterOnEntry
goForward - posting ValidationTransition
Traceback (most recent call last):
File "C:\Slicer 4.1.0 32bit\Slicer 4.1.0\lib\Slicer-4.1\qt-loadable-modules\Python\EMSegmentWizard\EMSegmentDefineMiscParametersStep.py", line 153, in onEntry
self.loadFromMRML()
File "C:\Slicer 4.1.0 32bit\Slicer 4.1.0\lib\Slicer-4.1\qt-loadable-modules\Python\EMSegmentWizard\EMSegmentDefineMiscParametersStep.py", line 221, in loadFromMRML
if self.__roiWidget:
AttributeError: ctkWorkflowWidgetStep has no attribute named '_EMSegmentDefineMiscParametersStep__roiWidget'
attemptToGoToNextStep - Attempting to go to the next step
validateInternal - validating input from 9. Define Miscellaneous Parameters
goToNextStepAfterSuccessfulValidation - Calidation succeeded
goToNextStepAfterSuccessfulValidation - Posting TransitionToNextStep
performTransitionBetweenSteps - Performing transition between steps
onExitInternal - exiting 9. Define Miscellaneous Parameters
onEntryInternal - entering input from Segmentation finished
processingAfterOnEntry
goForward - posting ValidationTransition
attemptToGoToNextStep - Attempting to go to the next step
validateInternal - validating input from Segmentation finished
goToNextStepAfterSuccessfulValidation - Calidation succeeded
goToNextStepAfterSuccessfulValidation - Posting TransitionToNextStep
performTransitionBetweenSteps - Performing transition between steps
onExitInternal - exiting Segmentation finished
onEntryInternal - entering input from 10. Segment
processingAfterOnEntry
goToStepSucceeded
EMSEG: Copying data to algorithm class...atlas data...target data...Setting number of target images: 1
AddingTargetImage...
Spacing: 1 1 1
Origin: 0 0 0
Extent: 0 255 0 255 0 129
Spacing: 1 1 1
Origin: 0 0 0
Extent: 0 255 0 255 0 129
global data...tree data...
Warning: the segmentation ROI was bogus, setting ROI to entire image
Axis 0 - Image Min: 1 <= RoiMin(1) <= ROIMax(-1) <= Image Max:256
Axis 1 - Image Min: 1 <= RoiMin(1) <= ROIMax(-1) <= Image Max:256
Axis 2 - Image Min: 1 <= RoiMin(1) <= ROIMax(-1) <= Image Max:130
NOTE: The above warning about ROI should not lead to poor segmentation results; the entire image should be segmented. It only indicates an error if you intended to segment a subregion of the image.
Define Boundary as: 1, 256, 1, 256, 1, 130,
DONE
[Start] Segmentation algorithm...
Local Version
Reserve memory for InputVector...Done
Multi Threading is working (8 cpus)
Print intermediate result to NULL
Registration Interpolation Type: Linear
Start vtkImageEMLocalSegmenter::HierarchicalSegmentation
====================================== Segmenting Level 1 ==========================================
Registration Type: Disabled
GenerateBackgroundProbability: Off
Standard exception: bad allocation
Failed to allocate 170393600 bytes.
ERROR: In ............\EMSegment\vtkEMSegmentLogic.cxx, line 2162
vtkEMSegmentLogic (057AFB38): Exception thrown during segmentation: bad allocation |
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