View Issue Details
ID | Project | Category | View Status | Date Submitted | Last Update |
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0001815 | Slicer4 | Core: Base Code | public | 2012-03-16 07:15 | 2013-08-12 03:44 |
Reporter | finetjul | Assigned To | finetjul | ||
Priority | low | Severity | feature | Reproducibility | N/A |
Status | closed | Resolution | fixed | ||
Product Version | Slicer 4.0.1 | ||||
Target Version | Slicer 4.4.0 | Fixed in Version | Slicer 4.3.0 | ||
Summary | 0001815: Add support for MRC files | ||||
Description | |||||
Additional Information | From Brad: Hello, I wrote a MRC ImageIO for ITK: http://www.insight-journal.org/browse/publication/729 With Slicer 3, I was able to compile the ITK image IO library, and use the ITK PluginIO mechanisms, by placing the shared library in the correct path, or setting the ITK_AUTOLOAD_PATH. This imageIO is included with ITK 4.0+ in the Review directory. When ITK is compiled with Review it will automatically be loaded. I may have compiled Slicer with ITK 4.0 and thereby enabling mrc io. I hope the Slicer folk can fill in the details and correct me if needed. Brad | ||||
Tags | No tags attached. | ||||
It's not clear what the requested action is for this issue. I see two possibilities: 1) Add support for reading mrc Images to slicer. For 1, when slicer is build with ITKv4, Slicer the mrc ImageIO will automatically be registered and it'll just work. The following should likely be done, when MRCImageIO moves out of ITK review: For 2, It would be nice if there was a configuration in the Application Settings for this environment variable. Previously I used a wrapper script to automatically set this variable specifically for Slicer. On OSX the .app, are more challenging to get this working. As this path should be specific for the Slicer version, the preferences is a logic place for is. |
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With the adoption of ITKv4, Slicer can load "mrc" files. It's not clear to me what this issue is for... perhaps to just add it to the list of files now? or it could be considered resolved. |
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I updated the documentation, it is indeed possible to read mrc files as volumes: However, it is not possible to "save" with MRC file format as of now. |
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Fixed in r22210 |
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Can happily read and write MRC files. |
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Date Modified | Username | Field | Change |
---|---|---|---|
2012-03-16 07:15 | finetjul | New Issue | |
2012-03-16 07:15 | finetjul | Status | new => assigned |
2012-03-16 07:15 | finetjul | Assigned To | => finetjul |
2012-03-16 07:15 | finetjul | Assigned To | finetjul => |
2012-03-26 07:37 | blowekamp | Note Added: 0003915 | |
2012-08-20 08:36 | nicole | Status | assigned => acknowledged |
2012-08-21 11:47 | jcfr | Target Version | => Slicer 4.3.0 |
2013-07-05 07:35 | pieper | Target Version | Slicer 4.3.0 => Slicer 4.4.0 |
2013-07-05 07:40 | blowekamp | Note Added: 0008867 | |
2013-07-09 07:34 | finetjul | Note Added: 0008940 | |
2013-07-18 06:00 | finetjul | Note Added: 0009124 | |
2013-07-18 06:00 | finetjul | Status | acknowledged => resolved |
2013-07-18 06:00 | finetjul | Fixed in Version | => Slicer 4.3.0 |
2013-07-18 06:00 | finetjul | Resolution | open => fixed |
2013-07-18 06:00 | finetjul | Assigned To | => finetjul |
2013-08-12 03:44 | blowekamp | Note Added: 0009464 | |
2013-08-12 03:44 | blowekamp | Status | resolved => closed |