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IDProjectCategoryView StatusDate SubmittedLast Update
0001661Slicer4Core: CLI infrastructurepublic2012-01-23 08:502012-08-21 09:48
Reporterfedorov Assigned Tofinetjul  
PrioritynormalSeverityfeatureReproducibilityN/A
Status closedResolutionfixed 
Product Version 
Target VersionSlicer 4.1.0Fixed in VersionSlicer 4.1.0 
Summary0001661: Support customization of which modules should be loaded
Description

Users often complain about the overwhelming number of features and modules in Slicer. They make menus busy, can confuse the user, can increase boot time and can potentially make software less stable.

In Slicer3, it was possible to select the modules of interest for the user, and not load the rest of the modules.

It would be nice to have this capability available in Slicer4.

TagsNo tags attached.

Activities

jcfr

jcfr

2012-02-22 06:23

administrator   ~0003678

Soon Julien will commit its work related to the re-factoring of the factory ... this will provide you the capability of disabling specific modules through the module settings.

Its commit he still in a review process and I am not sure it will make it for the release.

See https://github.com/finetjul/Slicer/commit/3133ed250c487c2e8921ceff3de66e451c10979c

Then, the idea is to also extend the list of options available to the command line so that you could disable one or more module, we could also think of being able to disable a given category.
finetjul

finetjul

2012-02-22 10:38

administrator   ~0003689

Fixed in r19334:
http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=19334
fedorov

fedorov

2012-02-22 13:16

developer   ~0003694

Is this intended to make it possible to disable Core modules?

I am not even sure if I want to try to disable something like "Volumes" just to test it, because if slicer doesn't start after this change, I do not know how un-do it!
finetjul

finetjul

2012-02-22 13:23

administrator   ~0003695

Yes, it should be possible to disable anything and it shouldn't crash (not that I tried :-) ).
if Slicer starts at startup, you can delete the ini files located in ~/.config/namic
jcfr

jcfr

2012-02-22 13:44

administrator   ~0003696

Later on, if you want to just start Slicer disabling a given module, we will also provide a command line switch to do so.
fedorov

fedorov

2012-02-22 14:04

developer   ~0003697

I just tried turning off Volumes, and it crashed on restart. But maybe I have something else going on, I am not sure.

I had fiducials and a ruler in the scene before restart.

Process: Slicer [69313]
Path: /Users/fedorov/Slicer/Slicer4-SuperBuild/Slicer-build/bin/Slicer.app/Contents/MacOS/./Slicer
Identifier: ???
Version: ()
Code Type: X86-64 (Native)
Parent Process: Slicer [69311]

Date/Time: 2012-02-22 19:01:18.312 -0500
OS Version: Mac OS X 10.6.8 (10K549)
Report Version: 6

Interval Since Last Report: 5476659 sec
Crashes Since Last Report: 1448
Per-App Interval Since Last Report: 1259908 sec
Per-App Crashes Since Last Report: 331
Anonymous UUID: A4FFDBC6-A70C-4F9D-8E4D-04763C72C469

Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000000013100c010
Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 QtCore 0x000000010a5aab3c QObjectPrivate::deleteChildren() + 92
1 QtCore 0x000000010a5acb66 QObject::~QObject() + 1270
2 libqSlicerBaseQTCore.dylib 0x00000001019ae583 qSlicerCoreIOManager::~qSlicerCoreIOManager() + 77 (qSlicerCoreIOManager.cxx:127)
3 libqSlicerBaseQTGUI.dylib 0x000000010030d9f8 qSlicerIOManager::~qSlicerIOManager() + 202 (qSlicerIOManager.cxx:157)
4 libqSlicerBaseQTGUI.dylib 0x00000001002fb9f1 QtSharedPointer::ExternalRefCount<qSlicerCoreIOManager>::internalDestroy() + 101 (qsharedpointer_impl.h:392)
5 libqSlicerBaseQTGUI.dylib 0x00000001002fba45 QtSharedPointer::ExternalRefCount<qSlicerCoreIOManager>::deref() + 61 (qsharedpointer_impl.h:332)
6 libqSlicerBaseQTCore.dylib 0x00000001019a6e34 QtSharedPointer::ExternalRefCount<qSlicerCoreIOManager>::~ExternalRefCount() + 50 (qsharedpointer_impl.h:381)
7 libqSlicerBaseQTCore.dylib 0x00000001019a6eb5 QSharedPointer<qSlicerCoreIOManager>::~QSharedPointer() + 37 (qsharedpointer_impl.h:442)
8 libqSlicerBaseQTCore.dylib 0x00000001019a404a qSlicerCoreApplicationPrivate::~qSlicerCoreApplicationPrivate() + 440 (qSlicerCoreApplication.cxx:114)
9 libqSlicerBaseQTGUI.dylib 0x00000001002fa52b qSlicerApplicationPrivate::~qSlicerApplicationPrivate() + 125 (qSlicerApplication.cxx:101)
10 libqSlicerBaseQTCore.dylib 0x00000001019a68fe QScopedPointerDeleter<qSlicerCoreApplicationPrivate>::cleanup(qSlicerCoreApplicationPrivate*) + 55 (qscopedpointer.h:62)
11 libqSlicerBaseQTCore.dylib 0x00000001019a6946 QScopedPointer<qSlicerCoreApplicationPrivate, QScopedPointerDeleter<qSlicerCoreApplicationPrivate> >::~QScopedPointer() + 48 (qscopedpointer.h:101)
12 libqSlicerBaseQTCore.dylib 0x000000010199f4da qSlicerCoreApplication::~qSlicerCoreApplication() + 60 (qSlicerCoreApplication.cxx:572)
13 libqSlicerBaseQTGUI.dylib 0x00000001002fa071 qSlicerApplication::~qSlicerApplication() + 55 (qSlicerApplication.cxx:170)
14 0x00000001000241d4 (anonymous namespace)::slicerQtMain(int, char**) + 3788 (Main.cxx:328)
15 0x0000000100024224 main + 43 (Main.cxx:361)
16 0x0000000100021d38 start + 52

Thread 1: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 0x00007fff818a6c0a kevent + 10
1 libSystem.B.dylib 0x00007fff818a8add _dispatch_mgr_invoke + 154
2 libSystem.B.dylib 0x00007fff818a87b4 _dispatch_queue_invoke + 185
3 libSystem.B.dylib 0x00007fff818a82de _dispatch_worker_thread2 + 252
4 libSystem.B.dylib 0x00007fff818a7c08 _pthread_wqthread + 353
5 libSystem.B.dylib 0x00007fff818a7aa5 start_wqthread + 13

Thread 2:
0 libSystem.B.dylib 0x00007fff818c8a6a __semwait_signal + 10
1 libSystem.B.dylib 0x00007fff818c88f9 nanosleep + 148
2 libSystem.B.dylib 0x00007fff818c8863 usleep + 57
3 libitksys.3.20.dylib 0x000000010de5522a itksys::SystemTools::Delay(unsigned int) + 110 (SystemTools.cxx:4091)
4 libSlicerBaseLogic.dylib 0x00000001047f1028 vtkSlicerApplicationLogic::ProcessProcessingTasks() + 362 (vtkSlicerApplicationLogic.cxx:436)
5 libSlicerBaseLogic.dylib 0x00000001047f1110 vtkSlicerApplicationLogic::ProcessingThreaderCallback(void*) + 62 (vtkSlicerApplicationLogic.cxx:427)
6 libSystem.B.dylib 0x00007fff818c6fd6 _pthread_start + 331
7 libSystem.B.dylib 0x00007fff818c6e89 thread_start + 13

Thread 3:
0 libSystem.B.dylib 0x00007fff818c8a6a __semwait_signal + 10
1 libSystem.B.dylib 0x00007fff818c88f9 nanosleep + 148
2 libSystem.B.dylib 0x00007fff818c8863 usleep + 57
3 libitksys.3.20.dylib 0x000000010de5522a itksys::SystemTools::Delay(unsigned int) + 110 (SystemTools.cxx:4091)
4 libSlicerBaseLogic.dylib 0x00000001047f0e6e vtkSlicerApplicationLogic::ProcessNetworkingTasks() + 362 (vtkSlicerApplicationLogic.cxx:512)
5 libSlicerBaseLogic.dylib 0x00000001047f10b6 vtkSlicerApplicationLogic::NetworkingThreaderCallback(void*) + 62 (vtkSlicerApplicationLogic.cxx:503)
6 libSystem.B.dylib 0x00007fff818c6fd6 _pthread_start + 331
7 libSystem.B.dylib 0x00007fff818c6e89 thread_start + 13

Thread 4:
0 libSystem.B.dylib 0x00007fff818d1932 select$DARWIN_EXTSN + 10
1 QtCore 0x000000010a660a30 QProcessManager::run() + 96
2 QtCore 0x000000010a5c7eff QThreadPrivate::start(void*) + 175
3 libSystem.B.dylib 0x00007fff818c6fd6 _pthread_start + 331
4 libSystem.B.dylib 0x00007fff818c6e89 thread_start + 13

Thread 5: com.apple.CFSocket.private
0 libSystem.B.dylib 0x00007fff818d1932 select$DARWIN_EXTSN + 10
1 com.apple.CoreFoundation 0x00007fff860ab468 __CFSocketManager + 824
2 libSystem.B.dylib 0x00007fff818c6fd6 _pthread_start + 331
3 libSystem.B.dylib 0x00007fff818c6e89 thread_start + 13

Thread 6:
0 libSystem.B.dylib 0x00007fff818c8a6a __semwait_signal + 10
1 libSystem.B.dylib 0x00007fff818cc881 _pthread_cond_wait + 1286
2 QtWebKit 0x0000000102b01008 WTF::TCMalloc_PageHeap::scavengerThread() + 520
3 QtWebKit 0x0000000102b010a9 WTF::TCMalloc_PageHeap::runScavengerThread(void*) + 9
4 libSystem.B.dylib 0x00007fff818c6fd6 _pthread_start + 331
5 libSystem.B.dylib 0x00007fff818c6e89 thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x000000013100bff0 rbx: 0x00000001134248a0 rcx: 0x0000000137f0f190 rdx: 0x0000000137f0f190
rdi: 0x0000000136476910 rsi: 0x0000000113100000 rbp: 0x00007fff5fbfdaa0 rsp: 0x00007fff5fbfda80
r8: 0x0000000000000001 r9: 0x00000001131dc800 r10: 0x0000000138de13b0 r11: 0x0000000000000003
r12: 0x0000000000000000 r13: 0x00000001134248b8 r14: 0x0000000000000078 r15: 0x000000012c249de0
rip: 0x000000010a5aab3c rfl: 0x0000000000010202 cr2: 0x000000013100c010

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0x
fedorov

fedorov

2012-02-22 16:20

developer   ~0003698

Julien, I tested this again. The crash was caused by something else -- I can start Slicer with no Volumes, and I do see that dependent modules disappear from the list.

The problem I noticed is that many modules that need Volumes do not list it as dependency, so they get loaded, but are not functional! Two that I tried that fall into this category: ChangeTracker and Sample Data.

This is very useful functionality, thank you so much for implementing this!
finetjul

finetjul

2012-02-22 16:34

administrator   ~0003699

Crash has been fixed in r19348
Please add more feature requests here: http://www.slicer.org/slicerWiki/index.php/Documentation/4.0/Developers/Modules#ToDo
or create new bug issues.

I agree, maybe Volumes shouldn't be "uncheckable"

Issue History

Date Modified Username Field Change
2012-01-23 08:50 fedorov New Issue
2012-01-23 19:21 finetjul Status new => assigned
2012-01-23 19:21 finetjul Assigned To => jcfr
2012-02-22 06:23 jcfr Note Added: 0003678
2012-02-22 10:38 finetjul Note Added: 0003689
2012-02-22 10:38 finetjul Assigned To jcfr => finetjul
2012-02-22 10:39 finetjul Status assigned => resolved
2012-02-22 10:39 finetjul Fixed in Version => Slicer 4.1.0
2012-02-22 10:39 finetjul Resolution open => fixed
2012-02-22 13:16 fedorov Note Added: 0003694
2012-02-22 13:16 fedorov Status resolved => feedback
2012-02-22 13:16 fedorov Resolution fixed => reopened
2012-02-22 13:23 finetjul Note Added: 0003695
2012-02-22 13:44 jcfr Note Added: 0003696
2012-02-22 14:04 fedorov Note Added: 0003697
2012-02-22 16:20 fedorov Note Added: 0003698
2012-02-22 16:20 fedorov Status feedback => closed
2012-02-22 16:20 fedorov Resolution reopened => fixed
2012-02-22 16:34 finetjul Note Added: 0003699
2012-02-22 16:34 finetjul Status closed => resolved
2012-02-22 16:37 finetjul Status resolved => closed
2012-08-21 09:48 jcfr Target Version => Slicer 4.1.0