Additional Information | % ulimit -c unlimited
% ./Slicer-build/Slicer
% gdb ./Slicer-build/bin/SlicerQT-real core
[Thread debugging using libthread_db enabled]
Core was generated by `/software/Slicer4/Slicer4-SuperBuild/Slicer-build/bin/./SlicerQT-real'.
Program terminated with signal 11, Segmentation fault.
#0 0x00007f181f89d468 in ctkVTKErrorLogMessageHandler::setEnabledInternal (this=0xb932a0, value=false)
at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Visualization/VTK/Core/ctkVTKErrorLogMessageHandler.cpp:180
180 d->SavedVTKOutputWindow->Delete();
(gdb) where
#0 0x00007f181f89d468 in ctkVTKErrorLogMessageHandler::setEnabledInternal (this=0xb932a0, value=false)
at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Visualization/VTK/Core/ctkVTKErrorLogMessageHandler.cpp:180
0000001 0x00007f181dd59700 in ctkErrorLogAbstractMessageHandler::setEnabled (this=0xb932a0, value=false)
at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Core/ctkErrorLogModel.cpp:94
0000002 0x00007f181dd59fa7 in ctkErrorLogModel::setMsgHandlerEnabled (this=0xb8ff60, handlerName=..., enabled=false)
at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Core/ctkErrorLogModel.cpp:228
0000003 0x00007f181dd5a3a0 in ctkErrorLogModel::setAllMsgHandlerEnabled (this=0xb8ff60, enabled=false)
at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Core/ctkErrorLogModel.cpp:273
0000004 0x00007f181dd5a2f6 in ctkErrorLogModel::disableAllMsgHandler (this=0xb8ff60)
at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Core/ctkErrorLogModel.cpp:264
0000005 0x00007f181dd5b0df in ctkErrorLogModel::addEntry (this=0xb8ff60, logLevel=ctkErrorLogModel::Error, origin=...,
text=0x7f17f80028f0 "ERROR: In /software/Slicer4/Slicer4-SuperBuild/VTK/Imaging/vtkImageMathematics.cxx, line 438\nvtkImageMathematics (0x1ab45e60): Execute: input2 ScalarType, 4, must match output ScalarType 11\n\n") at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Core/ctkErrorLogModel.cpp:403
0000006 0x00007f181f89ceee in (anonymous namespace)::ctkVTKOutputWindow::DisplayErrorText (this=0xb7e020,
text=0x7f17f80028f0 "ERROR: In /software/Slicer4/Slicer4-SuperBuild/VTK/Imaging/vtkImageMathematics.cxx, line 438\nvtkImageMathematics (0x1ab45e60): Execute: input2 ScalarType, 4, must match output ScalarType 11\n\n")
at /software/Slicer4/Slicer4-SuperBuild/CTK/Libs/Visualization/VTK/Core/ctkVTKErrorLogMessageHandler.cpp:77
Output Volume: /tmp/Slicer/fn864476537GGnXsc_vtkMRMLScalarVolumeNode15.nrrd
Pixel Type: short
Interpolation: Linear
Background Value: 0
Warp by Deformation Volume: /tmp/Slicer/fn945583536Ido94z_vtkMRMLScalarVolumeNode18.nrrd
TCL: ReadDataFromDisk: Try to read /tmp/Slicer/fn864476537GGnXsc_vtkMRMLScalarVolumeNode15.nrrd
TCL: Resampling atlas image 4 ...
Background level guess :
first place: 0 (99.8307%)
second place: 1 (0.0658017%)
Guessed background level: 0
TCL: Guessed background level: 0.0
TCL: Resampling image ...
TCL: with BRAINSResample using the Deformation Field
TCL: ==========================================
TCL: == Resample Image CLI
TCL: ==========================================
TCL: Create file: /tmp/Slicer/fn2037054672HSOpk9_vtkMRMLScalarVolumeNode6.nrrd
TCL: Create file: /tmp/Slicer/fn1953775746tUNouu_vtkMRMLScalarVolumeNode11.nrrd
TCL: Create file: /tmp/Slicer/fn323605117uW5ilY_vtkMRMLScalarVolumeNode16.nrrd
TCL: Executing /software/Slicer4/Slicer4-SuperBuild/Slicer-build/lib/Slicer-4.0/cli-modules//BRAINSResample --inputVolume "/tmp/Slicer/fn2037054672HSOpk9_vtkMRMLScalarVolumeNode6.nrrd" --referenceVolume "/tmp/Slicer/fn1953775746tUNouu_vtkMRMLScalarVolumeNode11.nrrd" --deformationVolume "/tmp/Slicer/fn945583536Ido94z_vtkMRMLScalarVolumeNode18.nrrd" --outputVolume "/tmp/Slicer/fn323605117uW5ilY_vtkMRMLScalarVolumeNode16.nrrd" --defaultValue "0.0" --pixelType short --interpolationMode Linear
TCL: =====================================================
Input Volume: /tmp/Slicer/fn2037054672HSOpk9_vtkMRMLScalarVolumeNode6.nrrd
Reference Volume: /tmp/Slicer/fn1953775746tUNouu_vtkMRMLScalarVolumeNode11.nrrd
Output Volume: /tmp/Slicer/fn323605117uW5ilY_vtkMRMLScalarVolumeNode16.nrrd
Pixel Type: short
Interpolation: Linear
Background Value: 0
Warp by Deformation Volume: /tmp/Slicer/fn945583536Ido94z_vtkMRMLScalarVolumeNode18.nrrd
TCL: ReadDataFromDisk: Try to read /tmp/Slicer/fn323605117uW5ilY_vtkMRMLScalarVolumeNode16.nrrd
TCL: Atlas-to-target registration complete.
TCL: ==========================================
TCL: == Update Intensity Distribution
TCL: ==========================================
{Minimum: 0.0 1e+299 1e+299}
TCLAuto: ========== EMSegmentGaussCurveCalculation ===============
TCLAuto: Warning: CutOffProbability was specified to be above 95.0% of the voxels in the ROI ! However even just refining computation to voxels with probability 1 results in lower CutOffProbability or not enough samples were taken (min: 10 count: 4301046) ! Set CutOffProbability to 42.80 %
TCLAuto: =========================================================
error: [/software/Slicer4/Slicer4-SuperBuild/Slicer-build/bin/./SlicerQT-real] exit abnormally - Report the problem. |
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