View Issue Details

IDProjectCategoryView StatusLast Update
0001394Slicer4Core: GUIpublic2012-07-30 06:23
Reporterpieper Assigned Tofinetjul  
PrioritynormalSeveritycrashReproducibilityalways
Status closedResolutionfixed 
Product VersionSlicer 4.0.0 
Target VersionSlicer 4.0.0Fixed in VersionSlicer 4.0.0 
Summary0001394: vtkImageResliceMask extent issue when resizing with glyphs displayed
Description

The background mask pointer is null and there is an error about requesting data out of bounds.

Apparently there is still some issue with the output extent in vtkImageResliceMask with the pipelined rendering mode.

Steps To Reproduce
  • Start with Conventional Layout
  • Download DTIBrain Sample Data
  • Go to Volumes Module and turn on Red Slice Glyphs
  • Switch to Red Slice Only layout
  • Switch back to Conventional Layout (boom!)
Additional Information

On windows, here is the stack trace for the thread that crashes. Note that: BackgroundMaskPtr=0x0000000000000000

MRMLLogic.dll!vtkSetPixels<float>(float * & outPtr=0x000000002a26c908, const float * inPtr=0x000000001728dca0, int numscalars=9, int n=723, unsigned char * & BackgroundMaskPtr=0x0000000000000000, bool value=false)  Line 1771 + 0x13 bytes    C++

MRMLLogic.dll!vtkReslicePermuteExecute<double>(vtkImageResliceMask self=0x00000000130ef4f0, vtkImageData inData=0x0000000016bda470, void inPtr=0x000000001e2f0070, vtkImageData outData=0x0000000016bdccd0, void outPtr=0x000000002a26c908, int outExt=0x000000002e5af828, int id=6, double [4] newmat=0x000000002e5af6f0, vtkImageData formal=0x00000000171bb300, void BackgroundMaskPtr=0x0000000000000000) Line 3158 C++
MRMLLogic.dll!vtkImageResliceMask::ThreadedRequestData(vtkInformation
formal=0x00000000176411d0, vtkInformation __formal=0x00000000176411d0, vtkInformation __formal=0x00000000176411d0, vtkImageData inData=0x000000001a4fa190, vtkImageData outData=0x000000001a506ac0, int outExt=0x000000002e5af828, int id=6) Line 3429 C++
vtkFiltering.dll!vtkThreadedImageAlgorithmThreadedExecute(void * arg=0x00000000130f0fc0) Line 211 C++
kernel32.dll!0000000076da652d()
[Frames below may be incorrect and/or missing, no symbols loaded for kernel32.dll]
ntdll.dll!000000007749c521()

TagsNo tags attached.

Relationships

parent of 0002374 closedfinetjul glyph display on slices is broken 
child of 0001368 closedalexy glyph display from slices is not correct 

Activities

pieper

pieper

2011-09-06 10:22

administrator   ~0002922

Running these steps on linux I get this warning output:

ERROR: In /home/pieper/slicer4/latest/Slicer4-superbuild/VTK/Filtering/vtkImageData.cxx, line 1460
vtkImageData (0x70c0560): GetScalarPointer: Pixel (0, 405, 0) not in memory.
Current extent= (0, 350, 0, 307, 0, 0)

It's probably the same as what would have shown on windows before the crash.

pieper

pieper

2011-09-07 04:54

administrator   ~0002932

Still an issue in revision 17988...

Process: Slicer [16458]
Path: /Users/USER/*/Slicer.app/Contents/MacOS/./Slicer
Identifier: ???
Version: ??? (???)
Code Type: X86-64 (Native)
Parent Process: Slicer [16456]

Date/Time: 2011-09-07 08:50:21.319 -0400
OS Version: Mac OS X 10.7 (11A2061)
Report Version: 9

Interval Since Last Report: 1032813 sec
Crashes Since Last Report: 6
Per-App Interval Since Last Report: 360036 sec
Per-App Crashes Since Last Report: 5
Anonymous UUID: FCDD65F0-EE9B-412F-B349-24726195E551

Crashed Thread: 10

Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000

VM Regions Near 0:
-->
__TEXT 0000000107ccb000-0000000107d0b000 [ 256K] r-x/rwx SM=COW /Users/USER/*/Slicer.app/Contents/MacOS/Slicer

Application Specific Information:
objc[16458]: garbage collection is OFF

Thread 0:: Dispatch queue: com.apple.main-thread
0 libMRMLLogic.dylib 0x00000001099a8a06 void vtkSetPixels<float>(float&, float const, int, int, unsigned char&, bool) + 182 (vtkImageResliceMask.cxx:1773)
1 libMRMLLogic.dylib 0x00000001099ce9a7 void vtkReslicePermuteExecute<double>(vtkImageResliceMask
, vtkImageData, void, vtkImageData, void, int, int, double () [4], vtkImageData, void) + 2183 (vtkImageResliceMask.cxx:3156)
2 libMRMLLogic.dylib 0x00000001099a49dd vtkImageResliceMask::ThreadedRequestData(vtkInformation*, vtkInformationVector, vtkInformationVector, vtkImageData, vtkImageData, int, int) + 2663 (vtkImageResliceMask.cxx:3427)
3 libvtkFiltering.5.9.dylib 0x0000000117b73dc9 vtkThreadedImageAlgorithmThreadedExecute(void
) + 825 (vtkThreadedImageAlgorithm.cxx:211)
4 libvtkCommon.5.9.dylib 0x0000000118e28838 vtkMultiThreader::SingleMethodExecute() + 1762 (vtkMultiThreader.cxx:398)
5 libvtkFiltering.5.9.dylib 0x0000000117b739a9 vtkThreadedImageAlgorithm::RequestData(vtkInformation*, vtkInformationVector, vtkInformationVector) + 1119 (vtkThreadedImageAlgorithm.cxx:294)
6 libvtkFiltering.5.9.dylib 0x000000011795ac2e vtkImageAlgorithm::ProcessRequest(vtkInformation
, vtkInformationVector
, vtkInformationVector) + 120 (vtkImageAlgorithm.cxx:102)
7 libvtkFiltering.5.9.dylib 0x00000001178d28ce vtkExecutive::CallAlgorithm(vtkInformation
, int, vtkInformationVector, vtkInformationVector) + 184 (vtkExecutive.cxx:747)
8 libvtkFiltering.5.9.dylib 0x00000001178ae12a vtkDemandDrivenPipeline::ExecuteData(vtkInformation
, vtkInformationVector
, vtkInformationVector) + 134 (vtkDemandDrivenPipeline.cxx:507)
9 libvtkFiltering.5.9.dylib 0x00000001178b2afa vtkDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector, vtkInformationVector) + 1730 (vtkDemandDrivenPipeline.cxx:279)
10 libvtkFiltering.5.9.dylib 0x0000000117b44dc9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector
, vtkInformationVector) + 2135 (vtkStreamingDemandDrivenPipeline.cxx:273)
11 libvtkFiltering.5.9.dylib 0x00000001178d54bf vtkExecutive::ForwardUpstream(vtkInformation
) + 423 (vtkExecutive.cxx:644)
12 libvtkFiltering.5.9.dylib 0x00000001178b2a25 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector
, vtkInformationVector) + 1517 (vtkDemandDrivenPipeline.cxx:265)
13 libvtkFiltering.5.9.dylib 0x0000000117b44dc9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector, vtkInformationVector) + 2135 (vtkStreamingDemandDrivenPipeline.cxx:273)
14 libvtkFiltering.5.9.dylib 0x00000001178d54bf vtkExecutive::ForwardUpstream(vtkInformation
) + 423 (vtkExecutive.cxx:644)
15 libvtkFiltering.5.9.dylib 0x00000001178b2a25 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector, vtkInformationVector) + 1517 (vtkDemandDrivenPipeline.cxx:265)
16 libvtkFiltering.5.9.dylib 0x0000000117b44dc9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector
, vtkInformationVector) + 2135 (vtkStreamingDemandDrivenPipeline.cxx:273)
17 libvtkFiltering.5.9.dylib 0x00000001178d54bf vtkExecutive::ForwardUpstream(vtkInformation
) + 423 (vtkExecutive.cxx:644)
18 libvtkFiltering.5.9.dylib 0x00000001178b2a25 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector
, vtkInformationVector) + 1517 (vtkDemandDrivenPipeline.cxx:265)
19 libvtkFiltering.5.9.dylib 0x0000000117b44dc9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector, vtkInformationVector) + 2135 (vtkStreamingDemandDrivenPipeline.cxx:273)
20 libvtkFiltering.5.9.dylib 0x00000001178d54bf vtkExecutive::ForwardUpstream(vtkInformation
) + 423 (vtkExecutive.cxx:644)
21 libvtkFiltering.5.9.dylib 0x00000001178b2a25 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector, vtkInformationVector) + 1517 (vtkDemandDrivenPipeline.cxx:265)
22 libvtkFiltering.5.9.dylib 0x0000000117b44dc9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector
, vtkInformationVector) + 2135 (vtkStreamingDemandDrivenPipeline.cxx:273)
23 libvtkFiltering.5.9.dylib 0x00000001178d54bf vtkExecutive::ForwardUpstream(vtkInformation
) + 423 (vtkExecutive.cxx:644)
24 libvtkFiltering.5.9.dylib 0x00000001178b2a25 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*, vtkInformationVector
, vtkInformationVector) + 1517 (vtkDemandDrivenPipeline.cxx:265)
25 libvtkFiltering.5.9.dylib 0x0000000117b44dc9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector*, vtkInformationVector) + 2135 (vtkStreamingDemandDrivenPipeline.cxx:273)
26 libvtkFiltering.5.9.dylib 0x00000001178d54bf vtkExecutive::ForwardUpstream(vtkInformation) + 423 (vtkExecutive.cxx:644)
27 libvtkFiltering.5.9.dylib 0x00000001178b2a25 vtkDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector, vtkInformationVector) + 1517 (vtkDemandDrivenPipeline.cxx:265)
28 libvtkFiltering.5.9.dylib 0x0000000117b44dc9 vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation
, vtkInformationVector
, vtkInformationVector) + 2135 (vtkStreamingDemandDrivenPipeline.cxx:273)
29 libvtkFiltering.5.9.dylib 0x00000001178b34ea vtkDemandDrivenPipeline::UpdateData(int) + 1128 (vtkDemandDrivenPipeline.cxx:449)
30 libvtkFiltering.5.9.dylib 0x0000000117b45087 vtkStreamingDemandDrivenPipeline::Update(int) + 257 (vtkStreamingDemandDrivenPipeline.cxx:323)
31 libvtkFiltering.5.9.dylib 0x000000011788d73f vtkDataObject::Update() + 95 (vtkDataObject.cxx:1032)
32 libvtkRendering.5.9.dylib 0x0000000114db1f05 vtkImageMapper::RenderStart(vtkViewport
, vtkActor2D) + 3733 (vtkImageMapper.cxx:237)
33 libvtkRendering.5.9.dylib 0x00000001150bf785 vtkOpenGLImageMapper::RenderOverlay(vtkViewport
, vtkActor2D) + 43 (vtkOpenGLImageMapper.h:45)
34 libvtkFiltering.5.9.dylib 0x00000001177f97e8 vtkActor2D::RenderOverlay(vtkViewport
) + 1862 (vtkActor2D.cxx:105)
35 libvtkRendering.5.9.dylib 0x0000000114f6b995 vtkRenderer::UpdateGeometry() + 2029 (vtkRenderer.cxx:660)
36 libvtkRendering.5.9.dylib 0x0000000115105140 vtkOpenGLRenderer::DeviceRender() + 210 (vtkOpenGLRenderer.cxx:247)
37 libvtkRendering.5.9.dylib 0x0000000114f6cea1 vtkRenderer::Render() + 3433 (vtkRenderer.cxx:352)
38 libvtkRendering.5.9.dylib 0x0000000114f632b3 vtkRendererCollection::Render() + 225 (vtkRendererCollection.cxx:47)
39 libvtkRendering.5.9.dylib 0x0000000114f81155 vtkRenderWindow::DoStereoRender() + 273 (vtkRenderWindow.cxx:710)
40 libvtkRendering.5.9.dylib 0x0000000114f81871 vtkRenderWindow::DoFDRender() + 1533 (vtkRenderWindow.cxx:678)
41 libvtkRendering.5.9.dylib 0x0000000114f82066 vtkRenderWindow::DoAARender() + 2028 (vtkRenderWindow.cxx:565)
42 libvtkRendering.5.9.dylib 0x0000000114f82a1e vtkRenderWindow::Render() + 2478 (vtkRenderWindow.cxx:378)
43 libvtkRendering.5.9.dylib 0x0000000114f87f9e vtkRenderWindowInteractor::Render() + 88 (vtkRenderWindowInteractor.cxx:163)
44 libQVTK.5.9.dylib 0x0000000110792db4 QVTKWidget::paintEvent(QPaintEvent) + 256 (QVTKWidget.cxx:479)
45 QtGui 0x000000011976c03a QWidget::event(QEvent
) + 2298
46 libQVTK.5.9.dylib 0x00000001107939d6 QVTKWidget::event(QEvent) + 536 (QVTKWidget.cxx:410)
47 QtGui 0x00000001197144fd QApplicationPrivate::notify_helper(QObject
, QEvent) + 189
48 QtGui 0x000000011971a52d QApplication::notify(QObject
, QEvent) + 349
49 QtCore 0x000000011a5a466c QCoreApplication::notifyInternal(QObject
, QEvent) + 124
50 QtGui 0x000000011971459c qt_sendSpontaneousEvent(QObject
, QEvent*) + 44
51 QtGui 0x00000001196bd8ed -[QCocoaView drawRect:] + 1213
52 com.apple.AppKit 0x00007fff8a37059c -[NSView _drawRect:clip:] + 3758
53 com.apple.AppKit 0x00007fff8a39df65 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 1583
54 com.apple.AppKit 0x00007fff8a39e391 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2651
55 com.apple.AppKit 0x00007fff8a39e391 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2651
56 com.apple.AppKit 0x00007fff8a39e391 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2651
57 com.apple.AppKit 0x00007fff8a39e391 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2651
58 com.apple.AppKit 0x00007fff8a39e391 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2651
59 com.apple.AppKit 0x00007fff8a39e391 -[NSView _recursiveDisplayAllDirtyWithLockFocus:visRect:] + 2651
60 com.apple.AppKit 0x00007fff8a36db7a -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 1032
61 com.apple.AppKit 0x00007fff8a36ee2f -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 5821
62 com.apple.AppKit 0x00007fff8a36ee2f -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 5821
63 com.apple.AppKit 0x00007fff8a36ee2f -[NSView _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 5821
64 com.apple.AppKit 0x00007fff8a36d070 -[NSThemeFrame _recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:] + 270
65 com.apple.AppKit 0x00007fff8a36847e -[NSView _displayRectIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:] + 4755
66 com.apple.AppKit 0x00007fff8a360ec7 -[NSView displayIfNeeded] + 1676
67 QtGui 0x00000001196c1e0a -[QCocoaWindow displayIfNeeded] + 250
68 com.apple.AppKit 0x00007fff8a360607 _handleWindowNeedsDisplayOrLayoutOrUpdateConstraints + 648
69 com.apple.CoreFoundation 0x00007fff8b621647 CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION + 23
70 com.apple.CoreFoundation 0x00007fff8b6215a6 CFRunLoopDoObservers + 374
71 com.apple.CoreFoundation 0x00007fff8b5f6889
CFRunLoopRun + 825
72 com.apple.CoreFoundation 0x00007fff8b5f6216 CFRunLoopRunSpecific + 230
73 com.apple.HIToolbox 0x00007fff880ef4ff RunCurrentEventLoopInMode + 277
74 com.apple.HIToolbox 0x00007fff880f6b73 ReceiveNextEventCommon + 181
75 com.apple.HIToolbox 0x00007fff880f6aae BlockUntilNextEventMatchingListInMode + 62
76 com.apple.AppKit 0x00007fff8a324fc5 _DPSNextEvent + 659
77 com.apple.AppKit 0x00007fff8a3248c9 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 135
78 com.apple.AppKit 0x00007fff8a32120a -[NSApplication run] + 463
79 QtGui 0x00000001196cf614 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588
80 QtCore 0x000000011a690b34 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
81 QtCore 0x000000011a690e54 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180
82 QtCore 0x000000011a69247c QCoreApplication::exec() + 188
83 0x0000000107cee825 main + 7109 (Main.cxx:378)
84 0x0000000107ceb924 start + 52

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff88e5a7e6 kevent + 10
1 libdispatch.dylib 0x00007fff890a560e _dispatch_mgr_invoke + 923
2 libdispatch.dylib 0x00007fff890a419e _dispatch_mgr_thread + 54

Thread 2:
0 libsystem_kernel.dylib 0x00007fff88e59e42 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff91a44dea nanosleep + 164
2 libsystem_c.dylib 0x00007fff91a44bb5 usleep + 53
3 libitksys.3.20.dylib 0x000000010e391498 itksys::SystemTools::Delay(unsigned int) + 98 (SystemTools.cxx:4091)
4 libSlicerBaseLogic.dylib 0x00000001085794b3 vtkSlicerApplicationLogic::ProcessProcessingTasks() + 539 (vtkSlicerApplicationLogic.cxx:847)
5 libSlicerBaseLogic.dylib 0x000000010857961e vtkSlicerApplicationLogic::ProcessingThreaderCallback(void*) + 76 (vtkSlicerApplicationLogic.cxx:802)
6 libsystem_c.dylib 0x00007fff91a8e8bf _pthread_start + 335
7 libsystem_c.dylib 0x00007fff91a91b75 thread_start + 13

Thread 3:
0 libsystem_kernel.dylib 0x00007fff88e59e42 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff91a44dea nanosleep + 164
2 libsystem_c.dylib 0x00007fff91a44bb5 usleep + 53
3 libitksys.3.20.dylib 0x000000010e391498 itksys::SystemTools::Delay(unsigned int) + 98 (SystemTools.cxx:4091)
4 libSlicerBaseLogic.dylib 0x00000001085791ff vtkSlicerApplicationLogic::ProcessNetworkingTasks() + 539 (vtkSlicerApplicationLogic.cxx:920)
5 libSlicerBaseLogic.dylib 0x0000000108579598 vtkSlicerApplicationLogic::NetworkingThreaderCallback(void*) + 76 (vtkSlicerApplicationLogic.cxx:877)
6 libsystem_c.dylib 0x00007fff91a8e8bf _pthread_start + 335
7 libsystem_c.dylib 0x00007fff91a91b75 thread_start + 13

Thread 4:
0 libsystem_kernel.dylib 0x00007fff88e59df2 __select + 10
1 QtCore 0x000000011a673070 QProcessManager::run() + 96
2 QtCore 0x000000011a5d86b5 QThreadPrivate::start(void*) + 149
3 libsystem_c.dylib 0x00007fff91a8e8bf _pthread_start + 335
4 libsystem_c.dylib 0x00007fff91a91b75 thread_start + 13

Thread 5:: com.apple.CFSocket.private
0 libsystem_kernel.dylib 0x00007fff88e59df2 select + 10
1 com.apple.CoreFoundation 0x00007fff8b63f66b
CFSocketManager + 1355
2 libsystem_c.dylib 0x00007fff91a8e8bf _pthread_start + 335
3 libsystem_c.dylib 0x00007fff91a91b75 thread_start + 13

Thread 6:
0 libsystem_kernel.dylib 0x00007fff88e5a192 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff91a90594 _pthread_wqthread + 758
2 libsystem_c.dylib 0x00007fff91a91b85 start_wqthread + 13

Thread 7:
0 libsystem_kernel.dylib 0x00007fff88e5a192 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff91a90594 _pthread_wqthread + 758
2 libsystem_c.dylib 0x00007fff91a91b85 start_wqthread + 13

Thread 8:
0 libsystem_kernel.dylib 0x00007fff88e5a192 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff91a90594 _pthread_wqthread + 758
2 libsystem_c.dylib 0x00007fff91a91b85 start_wqthread + 13

Thread 9:
0 libMRMLLogic.dylib 0x00000001099a89d0 void vtkSetPixels<float>(float&, float const, int, int, unsigned char&, bool) + 128 (vtkImageResliceMask.cxx:1775)
1 libMRMLLogic.dylib 0x00000001099cecbd void vtkReslicePermuteExecute<double>(vtkImageResliceMask
, vtkImageData, void, vtkImageData, void, int, int, double () [4], vtkImageData, void) + 2973 (vtkImageResliceMask.cxx:3183)
2 libMRMLLogic.dylib 0x00000001099a49dd vtkImageResliceMask::ThreadedRequestData(vtkInformation*, vtkInformationVector, vtkInformationVector, vtkImageData, vtkImageData*, int, int) + 2663 (vtkImageResliceMask.cxx:3427)
3 libvtkFiltering.5.9.dylib 0x0000000117b73dc9 vtkThreadedImageAlgorithmThreadedExecute(void*) + 825 (vtkThreadedImageAlgorithm.cxx:211)
4 libsystem_c.dylib 0x00007fff91a8e8bf _pthread_start + 335
5 libsystem_c.dylib 0x00007fff91a91b75 thread_start + 13

Thread 10 Crashed:
0 libMRMLLogic.dylib 0x00000001099a89a5 void vtkSetPixels<float>(float&, float const, int, int, unsigned char&, bool) + 85 (vtkImageResliceMask.cxx:1771)
1 libMRMLLogic.dylib 0x00000001099ce9a7 void vtkReslicePermuteExecute<double>(vtkImageResliceMask
, vtkImageData, void, vtkImageData, void, int, int, double () [4], vtkImageData, void) + 2183 (vtkImageResliceMask.cxx:3156)
2 libMRMLLogic.dylib 0x00000001099a49dd vtkImageResliceMask::ThreadedRequestData(vtkInformation*, vtkInformationVector, vtkInformationVector, vtkImageData, vtkImageData*, int, int) + 2663 (vtkImageResliceMask.cxx:3427)
3 libvtkFiltering.5.9.dylib 0x0000000117b73dc9 vtkThreadedImageAlgorithmThreadedExecute(void*) + 825 (vtkThreadedImageAlgorithm.cxx:211)
4 libsystem_c.dylib 0x00007fff91a8e8bf _pthread_start + 335
5 libsystem_c.dylib 0x00007fff91a91b75 thread_start + 13

Thread 11:
0 libqSlicerBaseQTCore.dylib 0x0000000108468ac1 QList<QString>::QList(QList<QString> const&) + 1 (qlist.h:118)
1 libqSlicerBaseQTCore.dylib 0x0000000108438a5d QForeachContainer<QList<QString> >::QForeachContainer(QList<QString> const&) + 49 (qglobal.h:2248)
2 libCTKCore.0.1.dylib 0x0000000118a7cb87 ctkErrorLogModel::msgHandlerEnabled() const + 127 (ctkErrorLogModel.cpp:236)
3 libCTKCore.0.1.dylib 0x0000000118a7f0ae ctkErrorLogModel::addEntry(ctkErrorLogModel::LogLevel, QString const&, char const) + 7194 (ctkErrorLogModel.cpp:401)
4 libCTKVisualizationVTKCore.0.1.dylib 0x00000001140ad1d4 (anonymous namespace)::ctkVTKOutputWindow::DisplayErrorText(char const
) + 102 (ctkVTKErrorLogMessageHandler.cpp:77)
5 libvtkCommon.5.9.dylib 0x0000000118e36ca3 vtkOutputWindowDisplayErrorText(char const) + 51 (vtkOutputWindow.cxx:42)
6 libvtkFiltering.5.9.dylib 0x00000001179627d9 vtkImageData::GetScalarPointer(int
) + 2501 (vtkImageData.cxx:1455)
7 libvtkFiltering.5.9.dylib 0x000000011795c5a1 vtkImageData::GetScalarPointerForExtent(int) + 75 (vtkImageData.cxx:1425)
8 libMRMLLogic.dylib 0x00000001099a467b vtkImageResliceMask::ThreadedRequestData(vtkInformation
, vtkInformationVector, vtkInformationVector, vtkImageData, vtkImageData*, int, int) + 1797 (vtkImageResliceMask.cxx:3393)
9 libvtkFiltering.5.9.dylib 0x0000000117b73dc9 vtkThreadedImageAlgorithmThreadedExecute(void*) + 825 (vtkThreadedImageAlgorithm.cxx:211)
10 libsystem_c.dylib 0x00007fff91a8e8bf _pthread_start + 335
11 libsystem_c.dylib 0x00007fff91a91b75 thread_start + 13

Thread 10 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000002 rcx: 0x0000000000000000 rdx: 0x0000000000000009
rdi: 0x0000000146743a20 rsi: 0x00007fccde453760 rbp: 0x00000001467437b0 rsp: 0x0000000146743770
r8: 0x00000001467439f8 r9: 0xe3b998e5ec5d9633 r10: 0x0000000000000000 r11: 0x0000000146743940
r12: 0x000000000000f243 r13: 0x0000000146744000 r14: 0xe3b998e5ec5d9633 r15: 0x0000000117b73a90
rip: 0x00000001099a89a5 rfl: 0x0000000000010206 cr2: 0x0000000000000000
Logical CPU: 3

Binary Images:
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finetjul

finetjul

2011-09-07 21:39

administrator   ~0002939

A fix has been suggested on VTK:
http://review.source.kitware.com/#change,2719

pieper

pieper

2011-09-08 04:40

administrator   ~0002944

Looks like a deep and subtle issue - nice debugging!

Will this go into Slicer/VTK.git for testing?

finetjul

finetjul

2011-09-08 07:16

administrator   ~0002945

Fixed in r17998:
http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&amp;revision=17998

pieper

pieper

2011-09-08 12:35

administrator   ~0002947

Doesn't crash any more :)

But I do notice that the glyphs are not the same after changing the size of the viewer. Is this a residual issue with the extents?

finetjul

finetjul

2011-09-08 12:55

administrator   ~0002948

Glyphs are computed from the resliced data that is controlled by the view size. Resizing/scaling the view leads to different values at each pixel, which would explain why the glyphs are different.
They should probably not be based on the view size (connect the glyph computation directly from the raw 3D volume, not the resliced 2D slice).

2011-09-08 14:36

 

Selection_111.png (75,713 bytes)
Selection_111.png (75,713 bytes)

2011-09-08 14:36

 

Selection_112.png (66,782 bytes)
Selection_112.png (66,782 bytes)
pieper

pieper

2011-09-08 14:39

administrator   ~0002949

Agreed that the glyph spacing should be in world space, not tied to the view size.

But what I was pointing out is shown in the two attached images (111 and 112). The first is obtained by turning on glyphs in the conventional layout. The second is after changing to red slice only and then back to conventional. Interestingly, doing a small pan or zoom in the slice window restores the original glyph display. That's why I thought of some kind of left over synchronization issue on the extents....

This is not high priority of course, but if there's an extent issue it could mean possible crashes too...

jcfr

jcfr

2012-07-27 15:36

administrator   ~0005312

Dear issue reporter,

Good news :) Slicer developers SOLVED the problem you reported - YOU now need to VERIFY and CLOSE this issue.

Issue History

Date Modified Username Field Change
2011-09-06 10:21 pieper New Issue
2011-09-06 10:21 pieper Status new => assigned
2011-09-06 10:21 pieper Assigned To => finetjul
2011-09-06 10:21 pieper Relationship added child of 0001368
2011-09-06 10:22 pieper Note Added: 0002922
2011-09-06 10:26 pieper Target Version Slicer 4.0 post RSNA => Slicer 4.0 RSNA
2011-09-06 10:26 pieper Additional Information Updated
2011-09-06 15:53 finetjul Status assigned => resolved
2011-09-06 15:53 finetjul Fixed in Version => Slicer 4.0 RSNA
2011-09-06 15:53 finetjul Resolution open => fixed
2011-09-06 15:54 finetjul Status resolved => assigned
2011-09-07 04:54 pieper Note Added: 0002932
2011-09-07 04:54 pieper Resolution fixed => reopened
2011-09-07 04:54 pieper Additional Information Updated
2011-09-07 21:39 finetjul Note Added: 0002939
2011-09-08 04:40 pieper Note Added: 0002944
2011-09-08 07:16 finetjul Note Added: 0002945
2011-09-08 07:16 finetjul Status assigned => resolved
2011-09-08 07:16 finetjul Resolution reopened => fixed
2011-09-08 12:35 pieper Note Added: 0002947
2011-09-08 12:55 finetjul Note Added: 0002948
2011-09-08 14:36 pieper File Added: Selection_111.png
2011-09-08 14:36 pieper File Added: Selection_112.png
2011-09-08 14:39 pieper Note Added: 0002949
2012-07-27 15:36 jcfr Note Added: 0005312
2012-07-28 10:09 pieper Relationship added parent of 0002374
2012-07-30 06:23 pieper Status resolved => closed
2012-07-30 06:23 pieper Additional Information Updated