COMP: Update BRAINSTools - Remove ITKv3 compatibility / Tweak BRAINSFit.xml

See 0003829

$ git shortlog slicer-2014-08-27-6b15c2b..slicer-2014-09-15-411dee9
David Welch (2):
ENH: Modified atlas xml name
ENH: Added print statement to diagnose missing sentinal file

Hans Johnson (6):
BUG: Uniformly apply modify_qsub_args for configuring qsub_args.
BUG: Fixed logic for set notation.
PERF: Fixed job submission logic to speed job start.
BUG: Add consistent use-sentinal file.
ENH: Added missing init.py file for SEMTools module.
ENH: Per requests of the slicer community, defaults changed.

Jean-Christophe Fillion-Robin (2):
Revert "COMP: fine-tune VTK dependencies"
Revert "COMP: move find_package(VTK) down to individual project directories"

Kent Williams (3):
COMP: Allow BRAINSTransformConvert without output transform file
COMP: Remove global declarations from GenericTransformImage.h
COMP: remove ITKV3_COMPATIBILITY entireley

Regina Kim (3):
ENH: Allow template building to only do new files
ENH: Add code for identifying the brain stem
BUG: ATLAS_DIRECTORY to ATLAS_INSTALLING_DIRECTORY

git-svn-id: http://svn.slicer.org/Slicer4/trunk@23678 3bd1e089-480b-0410-8dfb-8563597acbee