View Issue Details
| ID | Project | Category | View Status | Date Submitted | Last Update |
|---|---|---|---|---|---|
| 0004130 | Slicer4 | Module N4ITKBiasFieldCorrection | public | 2016-01-19 04:04 | 2017-06-10 08:51 |
| Reporter | jcfr | Assigned To | fedorov | ||
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | closed | Resolution | fixed | ||
| Product Version | Slicer 4.6.0 | ||||
| Target Version | Fixed in Version | Slicer 4.6.0 | |||
| Summary | 0004130: N4ITKBiasFieldCorrection: Failing following ITK updates of Jan 7 (r24836) | ||||
| Description | Following Slicer r24836 of January 7th, EMSegment tests using N4ITKBiasFieldCorrection are failing with the following error: $ "/home/jcfr/Projects/Slicer-Debug/Slicer-build/lib/Slicer-4.5/cli-modules/N4ITKBiasFieldCorrection" --iterations 1 --maskimage mask.nrrd input.nrrd output.nrrd <pre> See http://slicer.cdash.org/index.php?project=Slicer4&date=2016-01-09 | ||||
| Tags | No tags attached. | ||||
 |
input.nrrd (71,806 bytes) |
|
|
mask.nrrd (4,621 bytes) |
|
|
Fixed in r24883 |
|
Import 2017-06-07 23:51:09: master 5c34f8c2 2016-01-19 12:34:50 Details Diff |
BUG: Update ITKv4 to fix issue with N4ITKBiasFieldCorrection. Fixes 0004130 More specifically, commit InsightSoftwareConsortium/ITK@be66cfa will fix the following tests: EMSeg_SlicerCommonInterfaceTestGeneral EMSegCL_Task_MRIHumanBrain_2CH It basically prevents the following error: //--------------- itk::ExceptionObject (0x2a4c110) Location: "void itk::MultiThreader::SingleMethodExecute()" File: /home/jcfr/Projects/Slicer-Debug/ITKv4/Modules/Core/Common/src/itkMultiThreader.cxx Line: 417 Description: itk::ERROR: MultiThreader(0x2a8d3b0): Exception occurred during SingleMethodExecute /home/jcfr/Projects/Slicer-Debug/ITKv4/Modules/Filtering/ImageGrid/include/itkBSplineScatteredDataPointSetToImageFilter.hxx:621: itk::ERROR: PointSetToImageFilter(0x2a81400): The reparameterized point component -1.97373e-16 is outside the corresponding parametric domain of [0, 1). //--------------- Associated ITK updates: $ git shortlog 619f991..615607f --no-merges Bradley Lowekamp (1): BUG: Fix precision with accumulation and scaling in AdaptiveHistogram Hans Johnson (5): COMP: BSD command lines do not have --version COMP: Respect CMAKE_CXX_STANDARD during config COMP: Clang Override warnings removed BUG: Download URL was wrong for macosx COMP: The ComputeUpdate function is needed Hyun Jae Kang (1): BUG: Exclude a test code of ITKLabelMapTestDriver on OSX 10.6 Isaiah Norton (1): COMP: fix build with -std=c++11 when ITK/VXL initially configured without Jean-Christophe Fillion-Robin (1): COMP: Fix Slicer MacOSX extension packaging setting CMP0042 policy to OLD Matthew McCormick (10): DOC: Update the location of the GNUPlot Software Guide scripts. DOC: Update the Software Guide repo location in Examples/README.txt. COMP: Add export specification for itk::ResourceProbe. COMP: Require NO_MODULE with DCMTK find_package. COMP: Update CastXML revision for C++14 VS 2015. BUG: Fix PythonTransformCoverage test for Python 3.4. BUG: Fix PythonExtras test with Python 3. BUG: Fix PythonTypemaps tests with Python 3. ENH: Do not force shared libraries when wrapping. ENH: Allow ITKVideoBridgeOpenCV to be built externally. Michka Popoff (2): COMP: Re-enable review module for python 3 and older VTK's ENH: Use importlib for python 3.4 instead of imp Nick Tustison (1): ENH: Accommodate epsilon error on left side. Sean McBride (1): DOC: Update some woefully out-of-date GDCM comments, and typos Seun Odutola (1): BUG: Improved itkAnalyzeImageIO to handle case insensitive extensions git-svn-id: http://svn.slicer.org/Slicer4/trunk@24883 3bd1e089-480b-0410-8dfb-8563597acbee |
||
| mod - SuperBuild/External_ITKv4.cmake | Diff File | ||
| Date Modified | Username | Field | Change |
|---|---|---|---|
| 2016-01-19 04:04 | jcfr | New Issue | |
| 2016-01-19 04:04 | jcfr | Status | new => assigned |
| 2016-01-19 04:04 | jcfr | Assigned To | => fedorov |
| 2016-01-19 04:06 | jcfr | File Added: input.nrrd | |
| 2016-01-19 04:06 | jcfr | File Added: mask.nrrd | |
| 2016-01-19 12:36 | jcfr | Note Added: 0013727 | |
| 2016-01-19 12:36 | jcfr | Status | assigned => resolved |
| 2016-01-19 12:36 | jcfr | Fixed in Version | => Slicer 4.6.0 |
| 2016-01-19 12:36 | jcfr | Resolution | open => fixed |
| 2016-01-26 16:29 | jcfr | Status | resolved => closed |
| 2017-06-10 08:51 | jcfr | Changeset attached | => Slicer master 5c34f8c2 |
