View Issue Details

IDProjectCategoryView StatusLast Update
0002511Slicer4public2014-03-06 04:55
Reporterjcfr Assigned Tojcfr  
PrioritynormalSeverityminorReproducibilityhave not tried
Status closedResolutionfixed 
Product Version 
Target VersionSlicer 4.2.0Fixed in VersionSlicer 4.2.0 
Summary0002511: Tutorial 9 - Longitudinal analysis of meningioma growth
Description

See http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning

TagsNo tags attached.

Relationships

parent of 0002587 closedfedorov Tutotorial 9 - Part3 - Volume metric changes are not displayed 
parent of 0002588 closedfedorov Tutorial 9 - Part3 - Memory leaks after closing scene and then slice 
parent of 0002589 closedfedorov Tutorial 9 - Part3 - Exiting and re-entering module does NOT re-display volume rendered tumor 
parent of 0002598 closedfedorov Tutorial 9 - Part3 - Going back and forth btw step2 and step3 create additional ROI node 
parent of 0002700 closedfedorov Tutorial 9 - Part3 - Annotation ROI is not visible 

Activities

jcfr

jcfr

2012-09-27 06:33

administrator   ~0006241

Reminder sent to: fedorov

Hi Andriy,

Do you know where I could find the data associated with that tutorial ?

I couldn't find any link on the page: http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning

Thanks for your help,

fedorov

fedorov

2012-09-27 06:38

developer   ~0006244

JC, there's a button to download the test data in the first step of the wizard: http://www.slicer.org/slicerWiki/index.php/File:Slicer4_ChangeTracker_Step1.png

Also, this is the same data as MR Tumor growth dataset (2 images) in "Sample Data" module.

2012-09-27 06:46

 

jcfr

jcfr

2012-09-27 06:52

administrator   ~0006245

I am not sure to understand. Base on slide 37 of the tutorial (Part 2), I am suppose to load PETCT scene. See screenshot associated with the issue. ChangeTracker is involved in part3.

We should probably update the tutorial and/or provide a link to the data on the wiki ?

Independently of the fact there is a button allowing to download "test data" in the module itself (not obvious to understand they are the data associated with the tutorial), I still think it's important to provide link to the data on the wiki.

For reference, the tutorial I am trying to verify is the following: http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf

nicole

nicole

2012-09-27 11:30

administrator   ~0006250

Try this PETCT Fusion data set:
http://www.na-mic.org/Wiki/images/7/73/PETCTFusion-Tutorial-Data.zip

fedorov

fedorov

2012-09-27 13:42

developer   ~0006255

JC, sorry I didn't realize you are talking about PET/CT dataset, not ChangeTracker.

I just googled "slicer quantitative imaging tutorial", and the first entry had the link to this:

http://www.slicer.org/slicerWiki/index.php/Documentation/4.0/Training#Slicer4_Quantitative_Imaging_tutorial

Both PET/CT and ChangeTRacker datasets seem to be there (at least, the links are).

jcfr

jcfr

2012-10-01 10:02

administrator   ~0006297

Linux - Ubuntu 10.04
Part 2:

  • Beside of some minor issues in the description of the different steps. Software works as expected:
    • No more "load scene" but "Add data"
    • SUVComputation module has been renamed into "PET Standard Update Value Computation"
    • On slide 44, it's a little confusion to see the color that are later applied.
jcfr

jcfr

2012-10-01 10:36

administrator   ~0006299

Linux - Ubuntu 10.04
Part3:

  • Going back and forth between Step2 and Step3 created a new AnnotationROI node
  • Tutorial is confusing. Looking at Slide70, the user expects the tumor being volume rendered while he is in step2. Is it a bug ? Should the tumor be volume rendered in step 2?
  • Tutorial talks about a BaselineROI_segmentation1 whereas only "BaselineROI_segmentation" is available following the tutorial step.

    • On Slicer75, it's not clear what is the meaning of "Scroll through the slices until the segmentation appear optimal". What does that mean ? Are the selected slices input of the next step ?

    • Volume metric changes are not displayed

jcfr

jcfr

2012-10-01 10:52

administrator   ~0006300

Seems Part3 of the tutorial (involving ChangeTracker) is not work as expected. This has been captured by the issues child of these one.

jcfr

jcfr

2012-10-09 07:58

administrator   ~0006469

Last edited: 2012-10-09 08:02

Windows - 64bit - r21127 - nightly build of 2012-10-06

-> Works :)

BUT also crash on exit.

=> Will have to try with the latest nightly when they will be available again.

jcfr

jcfr

2012-10-30 11:23

administrator   ~0006925

r21280 - MacOSX - Ok (Both ChangeTracker and PETCT)

jcfr

jcfr

2014-03-06 04:53

administrator   ~0010750

Closing resolved issues that have not been updated in more than 3 months

Issue History

Date Modified Username Field Change
2012-09-13 11:45 jcfr New Issue
2012-09-13 12:00 jcfr Target Version => Slicer 4.2.0 - coming release
2012-09-13 12:06 jcfr Status new => assigned
2012-09-13 12:06 jcfr Assigned To => jcfr
2012-09-27 06:33 jcfr Note Added: 0006241
2012-09-27 06:33 jcfr Status assigned => feedback
2012-09-27 06:38 fedorov Note Added: 0006244
2012-09-27 06:46 jcfr File Added: Tutorial9-PETCTFusionScene.png
2012-09-27 06:52 jcfr Note Added: 0006245
2012-09-27 11:30 nicole Note Added: 0006250
2012-09-27 13:42 fedorov Note Added: 0006255
2012-09-28 07:25 jcfr Status feedback => assigned
2012-10-01 10:02 jcfr Note Added: 0006297
2012-10-01 10:36 jcfr Note Added: 0006299
2012-10-01 10:38 jcfr Relationship added parent of 0002587
2012-10-01 10:41 jcfr Relationship added parent of 0002588
2012-10-01 10:47 jcfr Relationship added parent of 0002589
2012-10-01 10:52 jcfr Note Added: 0006300
2012-10-01 10:52 jcfr Status assigned => feedback
2012-10-02 13:00 jcfr Relationship added parent of 0002598
2012-10-09 07:58 jcfr Note Added: 0006469
2012-10-09 08:01 jcfr Note Edited: 0006469
2012-10-09 08:02 jcfr Note Edited: 0006469
2012-10-29 08:15 jcfr Relationship added parent of 0002700
2012-10-29 12:10 jcfr Status feedback => assigned
2012-10-30 11:23 jcfr Note Added: 0006925
2012-10-31 10:48 jcfr Status assigned => resolved
2012-10-31 10:48 jcfr Fixed in Version => Slicer 4.2.0 - coming release
2012-10-31 10:48 jcfr Resolution open => fixed
2014-03-06 04:53 jcfr Note Added: 0010750
2014-03-06 04:55 jcfr Status resolved => closed