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It works on linux, I will check on windows.
See http://slicer.cdash.org/testDetails.php?test=2519068&build=30137 |
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Was able to reproduce it: http://slicer.cdash.org/viewTest.php?onlyfailed&buildid=30141 |
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Chris> Try to reproduce on windows, look at the XML files. Do no hesitate to talk with Zach and CMake folks. |
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I've submitted the experimental from the dashboard, and plenty of the module generic tests are failing with the error:
[C:/D/E/Slicer-build-2/Slicer-build/bin/Debug/qSlicerCamerasModuleCxxTests.exe] exit abnormally - Report the problem
These are reported on the dashboard. |
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Here is the XML submitted for the latest nightly build. It appears that the XML is fine, and the output simply isn't making it to the XML.
<Test Status="failed">
<Name>py_nomainwindow_qSlicerDICOMModuleGenericTest</Name>
<Path>./Modules/Scripted/Scripts/Testing/Python</Path>
<FullName>./Modules/Scripted/Scripts/Testing/Python/py_nomainwindow_qSlicerDICOMModuleGenericTest</FullName>
<FullCommandLine>C:\D\N\Slicer-1-build\Slicer-build\Slicer.exe "--no-splash" "--testing" "--ignore-slicerrc" "--no-main-window" "--python-code" "import slicer.testing; slicer.testing.runUnitTest(['C:/D/N/Slicer-1-build/Slicer-build/Modules/Scripted/Scripts/Testing/Python', 'C:/D/N/Slicer-1/Modules/Scripted/Scripts/Testing/Python'], 'qSlicerDICOMModuleGenericTest')"</FullCommandLine>
<Results>
<NamedMeasurement type="text/string" name="Exit Code"><Value>Timeout</Value></NamedMeasurement>
<NamedMeasurement type="text/string" name="Exit Value"><Value>1</Value></NamedMeasurement>
<NamedMeasurement type="numeric/double" name="Execution Time"><Value>900.048</Value></NamedMeasurement>
<NamedMeasurement type="text/string" name="Completion Status"><Value>Completed</Value></NamedMeasurement>
<NamedMeasurement type="text/string" name="Command Line"><Value>C:\D\N\Slicer-1-build\Slicer-build\Slicer.exe "--no-splash" "--testing" "--ignore-slicerrc" "--no-main-window" "--python-code" "import slicer.testing; slicer.testing.runUnitTest(['C:/D/N/Slicer-1-build/Slicer-build/Modules/Scripted/Scripts/Testing/Python', 'C:/D/N/Slicer-1/Modules/Scripted/Scripts/Testing/Python'], 'qSlicerDICOMModuleGenericTest')"</Value></NamedMeasurement>
<Measurement>
<Value/>
</Measurement>
</Results>
</Test> |
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Good catch. Would also be nice to compare with the XML generated on linux. Then, you could probably try to contact CMake folks (kitware developer list) describing them the issue. Thanks |
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Here is the output of the same test on my linux machine:
http://slicer.cdash.org/testDetails.php?test=2872926&build=38409 |
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What about the XML ? When you think you have enough element, make sure to engage CMake folks. Thanks |
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XML from my Linux machine:
<Test Status="failed">
<Name>py_nomainwindow_qSlicerDICOMModuleGenericTest</Name>
<Path>./Modules/Scripted/Scripts/Testing/Python</Path>
<FullName>./Modules/Scripted/Scripts/Testing/Python/py_nomainwindow_qSlicerDICOMModuleGenericTest</FullName>
<FullCommandLine>/home/crmullin/Projects/Slicer4-SuperBuild-Debug/Slicer-build/Slicer "--no-splash" "--testing" "--ignore-slicerrc" "--no-main-window" "--python-code" "import slicer.testing; slicer.testing.runUnitTest(['/home/crmullin/Projects/Slicer4-SuperBuild-Debug/Slicer-build/Modules/Scripted/Scripts/Testing/Python', '/home/crmullin/Slicer/Modules/Scripted/Scripts/Testing/Python'], 'qSlicerDICOMModuleGenericTest')"</FullCommandLine>
<Results>
<NamedMeasurement type="text/string" name="Exit Code"><Value>Failed</Value></NamedMeasurement>
<NamedMeasurement type="text/string" name="Exit Value"><Value>1</Value></NamedMeasurement>
<NamedMeasurement type="numeric/double" name="Execution Time"><Value>14.2729</Value></NamedMeasurement>
<NamedMeasurement type="text/string" name="Completion Status"><Value>Completed</Value></NamedMeasurement>
<NamedMeasurement type="text/string" name="Command Line"><Value>/home/crmullin/Projects/Slicer4-SuperBuild-Debug/Slicer-build/Slicer "--no-splash" "--testing" "--ignore-slicerrc" "--no-main-window" "--python-code" "import slicer.testing; slicer.testing.runUnitTest(['/home/crmullin/Projects/Slicer4-SuperBuild-Debug/Slicer-build/Modules/Scripted/Scripts/Testing/Python', '/home/crmullin/Slicer/Modules/Scripted/Scripts/Testing/Python'], 'qSlicerDICOMModuleGenericTest')"</Value></NamedMeasurement>
<Measurement>
<Value>Number of registered modules: 112
Register compression libraries
Number of instantiated modules: 112
Loading module "ACPCTransform"
Loading module "AddScalarVolumes"
Loading module "AffineRegistration"
Loading module "Annotations"
CreatePolyData: 0x30a2150
CreatePolyData: 0x30a43f0
CreatePolyData: 0x30a43f0
CreatePolyData: 0x30a43f0
CreatePolyData: 0x30a7390
CreatePolyData: 0x30a7390
CreatePolyData: 0x30a7390
Loading module "BRAINSDemonWarp"
Loading module "BRAINSFit"
Loading module "BRAINSFitEZ"
Loading module "BRAINSLandmarkInitializer"
Loading module "BRAINSROIAuto"
Loading module "BRAINSResample"
Loading module "BRAINSResize"
Loading module "BRAINSTransformConvert"
Loading module "BSplineDeformableRegistration"
Loading module "BSplineToDeformationField"
Loading module "BlobDetection"
Loading module "CLI4Test"
Loading module "Cameras"
Loading module "CastScalarVolume"
Loading module "ChangeTracker"
Loading module "CheckerBoardFilter"
Loading module "Colors"
Loading module "ConnectedComponent"
Loading module "CreateDICOMSeries"
Loading module "CropVolume"
Loading module "CurvatureAnisotropicDiffusion"
Loading module "DICOM"
Loading module "DICOM2FullBrainTractography"
Loading module "DICOMDiffusionVolumePlugin"
Loading module "DICOMScalarVolumePlugin"
Loading module "DICOMSlicerDataBundlePlugin"
Loading module "DTIexport"
Loading module "DTIimport"
Loading module "DWIJointRicianLMMSEFilter"
Loading module "DWIRicianLMMSEFilter"
Loading module "DWIToDTIEstimation"
Loading module "DWIUnbiasedNonLocalMeansFilter"
Loading module "Data"
Loading module "DataProbe"
Loading module "DicomToNrrdConverter"
Loading module "DiffusionTensorScalarMeasurements"
Loading module "DiffusionTensorTest"
Loading module "DiffusionWeightedVolumeMasking"
Loading module "DoubleArrays"
Loading module "EMSegment"
Loading module "EMSegmentCommandLine"
Loading module "EMSegmentQuick"
Loading module "EMSegmentTransformToNewFormat"
Loading module "Editor"
Loading module "Endoscopy"
Loading module "EventBroker"
Loading module "ExecutionModelTour"
Loading module "ExpertAutomatedRegistration"
Loading module "ExtractSkeleton"
Loading module "FiducialRegistration"
Loading module "GaussianBlurImageFilter"
Loading module "GradientAnisotropicDiffusion"
Loading module "GrayscaleFillHoleImageFilter"
Loading module "GrayscaleGrindPeakImageFilter"
Loading module "GrayscaleModelMaker"
Loading module "HistogramMatching"
Loading module "ImageLabelCombine"
Loading module "IntensityDifferenceMetric"
Loading module "LabelMapSmoothing"
Loading module "LabelStatistics"
Loading module "LinearRegistration"
Loading module "MaskScalarVolume"
Loading module "MedianImageFilter"
Loading module "MergeModels"
Loading module "ModelMaker"
Loading module "ModelToLabelMap"
Loading module "Models"
Loading module "MultiResolutionAffineRegistration"
Loading module "MultiVolumeExplorer"
Loading module "MultiVolumeImporter"
Loading module "MultiVolumeImporterPlugin"
Loading module "MultiplyScalarVolumes"
Loading module "N4ITKBiasFieldCorrection"
Loading module "OpenIGTLinkIF"
Loading module "OrientScalarVolume"
Loading module "OtsuThresholdImageFilter"
Loading module "OtsuThresholdSegmentation"
Loading module "PerformanceTests"
Loading module "ProbeVolumeWithModel"
Loading module "Reformat"
Loading module "ResampleDTIVolume"
Loading module "ResampleScalarVectorDWIVolume"
Loading module "ResampleScalarVolume"
Loading module "RigidRegistration"
Loading module "RobustStatisticsSegmenter"
Loading module "SampleData"
Loading module "SceneViews"
Loading module "SelfTests"
Loading module "SimpleRegionGrowingSegmentation"
Loading module "SlicerMRBTest"
Loading module "SubtractScalarVolumes"
Loading module "TestGridTransformRegistration"
Loading module "ThresholdScalarVolume"
Loading module "ThresholdThreadingTest"
Loading module "TractographyDisplay"
Loading module "TractographyFiducialSeeding"
Loading module "TractographyLabelMapSeeding"
Loading module "Transforms"
Loading module "VBRAINSDemonWarp"
Loading module "VectorToScalarVolume"
Loading module "ViewControllers"
Loading module "VolumeRendering"
Loading module "Volumes"
Loading module "VotingBinaryHoleFillingImageFilter"
Loading module "WebGLExport"
Loading module "Welcome"
Loading module "fiber_visibility_crash2438"
Loading module "labelToggleBug2049"
Number of loaded modules: 112
Register compression libraries
ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
QSqlQuery::exec: database not open
Register compression libraries
ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
PythonQt: QObject::connect() signal 'clicked()' does not exist on QAction
Uninstantiating: "labelToggleBug2049"
Uninstantiating: "fiber_visibility_crash2438"
Uninstantiating: "Welcome"
Uninstantiating: "WebGLExport"
Uninstantiating: "VotingBinaryHoleFillingImageFilter"
Uninstantiating: "VolumeRendering"
Uninstantiating: "ViewControllers"
Uninstantiating: "VectorToScalarVolume"
Uninstantiating: "VBRAINSDemonWarp"
Uninstantiating: "Transforms"
Uninstantiating: "TractographyLabelMapSeeding"
Uninstantiating: "TractographyFiducialSeeding"
Uninstantiating: "TractographyDisplay"
Uninstantiating: "ThresholdThreadingTest"
Uninstantiating: "ThresholdScalarVolume"
Uninstantiating: "TestGridTransformRegistration"
Uninstantiating: "SubtractScalarVolumes"
Uninstantiating: "SlicerMRBTest"
Uninstantiating: "SimpleRegionGrowingSegmentation"
Uninstantiating: "SelfTests"
Uninstantiating: "SceneViews"
Uninstantiating: "SampleData"
Uninstantiating: "RobustStatisticsSegmenter"
Uninstantiating: "RigidRegistration"
Uninstantiating: "ResampleScalarVolume"
Uninstantiating: "ResampleDTIVolume"
Uninstantiating: "Reformat"
Uninstantiating: "ProbeVolumeWithModel"
Uninstantiating: "PerformanceTests"
Uninstantiating: "OtsuThresholdSegmentation"
Uninstantiating: "OtsuThresholdImageFilter"
Uninstantiating: "OrientScalarVolume"
Uninstantiating: "OpenIGTLinkIF"
Uninstantiating: "N4ITKBiasFieldCorrection"
Uninstantiating: "MultiplyScalarVolumes"
Uninstantiating: "MultiVolumeImporterPlugin"
Uninstantiating: "MultiVolumeImporter"
Uninstantiating: "MultiVolumeExplorer"
Uninstantiating: "MultiResolutionAffineRegistration"
Uninstantiating: "Models"
Uninstantiating: "ModelToLabelMap"
Uninstantiating: "ModelMaker"
Uninstantiating: "MergeModels"
Uninstantiating: "MedianImageFilter"
Uninstantiating: "MaskScalarVolume"
Uninstantiating: "LinearRegistration"
Uninstantiating: "LabelStatistics"
Uninstantiating: "LabelMapSmoothing"
Uninstantiating: "IntensityDifferenceMetric"
Uninstantiating: "ImageLabelCombine"
Uninstantiating: "HistogramMatching"
Uninstantiating: "GrayscaleModelMaker"
Uninstantiating: "GrayscaleGrindPeakImageFilter"
Uninstantiating: "GrayscaleFillHoleImageFilter"
Uninstantiating: "GradientAnisotropicDiffusion"
Uninstantiating: "GaussianBlurImageFilter"
Uninstantiating: "FiducialRegistration"
Uninstantiating: "ExtractSkeleton"
Uninstantiating: "ExpertAutomatedRegistration"
Uninstantiating: "ExecutionModelTour"
Uninstantiating: "EventBroker"
Uninstantiating: "Endoscopy"
Uninstantiating: "Editor"
Uninstantiating: "EMSegmentTransformToNewFormat"
Uninstantiating: "EMSegmentQuick"
Uninstantiating: "EMSegmentCommandLine"
Uninstantiating: "EMSegment"
Uninstantiating: "DoubleArrays"
Uninstantiating: "DiffusionWeightedVolumeMasking"
Uninstantiating: "DiffusionTensorTest"
Uninstantiating: "DiffusionTensorScalarMeasurements"
Uninstantiating: "DicomToNrrdConverter"
Uninstantiating: "DataProbe"
Uninstantiating: "Data"
Uninstantiating: "DWIUnbiasedNonLocalMeansFilter"
Uninstantiating: "DWIToDTIEstimation"
Uninstantiating: "DWIRicianLMMSEFilter"
Uninstantiating: "DWIJointRicianLMMSEFilter"
Uninstantiating: "DTIimport"
Uninstantiating: "DTIexport"
Uninstantiating: "DICOMSlicerDataBundlePlugin"
Uninstantiating: "DICOMScalarVolumePlugin"
Uninstantiating: "DICOMDiffusionVolumePlugin"
Uninstantiating: "DICOM2FullBrainTractography"
Uninstantiating: "DICOM"
Uninstantiating: "CurvatureAnisotropicDiffusion"
Uninstantiating: "CropVolume"
Uninstantiating: "ResampleScalarVectorDWIVolume"
Uninstantiating: "Volumes"
Uninstantiating: "CreateDICOMSeries"
Uninstantiating: "ConnectedComponent"
Uninstantiating: "Colors"
Uninstantiating: "CheckerBoardFilter"
Uninstantiating: "ChangeTracker"
Uninstantiating: "CastScalarVolume"
Uninstantiating: "Cameras"
Uninstantiating: "CLI4Test"
Uninstantiating: "BlobDetection"
Uninstantiating: "BSplineToDeformationField"
Uninstantiating: "BSplineDeformableRegistration"
Uninstantiating: "BRAINSTransformConvert"
Uninstantiating: "BRAINSResize"
Uninstantiating: "BRAINSResample"
Uninstantiating: "BRAINSROIAuto"
Uninstantiating: "BRAINSLandmarkInitializer"
Uninstantiating: "BRAINSFitEZ"
Uninstantiating: "BRAINSFit"
Uninstantiating: "BRAINSDemonWarp"
Uninstantiating: "Annotations"
Uninstantiating: "AffineRegistration"
Uninstantiating: "AddScalarVolumes"
Uninstantiating: "ACPCTransform"
path: ['/home/crmullin/Projects/Slicer4-SuperBuild-Debug/Slicer-build/Modules/Scripted/Scripts/Testing/Python', '/home/crmullin/Slicer/Modules/Scripted/Scripts/Testing/Python']
testname: qSlicerDICOMModuleGenericTest
test_acknowledgementText (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_application (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_categories (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_contributors (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_logic (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_module_valid (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_setCurrentModule (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_setMRMLScene (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_settings (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
test_widgetRepresentation (qSlicerDICOMModuleGenericTest.qSlicerDICOMModuleGenericTest) ... ok
Ran 10 tests in 0.167s
OK
QSqlDatabasePrivate::removeDatabase: connection 'SLICER' is still in use, all queries will cease to work.
QSqlDatabasePrivate::removeDatabase: connection 'DICOM-DB' is still in use, all queries will cease to work.
error: [/home/crmullin/Projects/Slicer4-SuperBuild-Debug/Slicer-build/bin/./SlicerApp-real] exit abnormally - Report the problem.
</Value>
</Measurement>
</Results>
</Test> |
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Here is the plain-text output from the last failed test (in the Temporary directory):
381/609 Testing: py_qSlicerDICOMModuleGenericTest
381/609 Test: py_qSlicerDICOMModuleGenericTest
Command: "C:/D/N/Slicer-1-build/Slicer-build/Slicer.exe" "--no-splash" "--testing" "--ignore-slicerrc" "--python-code" "import slicer.testing; slicer.testing.runUnitTest(['C:/D/N/Slicer-1-build/Slicer-build/Modules/Scripted/Scripts/Testing/Python', 'C:/D/N/Slicer-1/Modules/Scripted/Scripts/Testing/Python'], 'qSlicerDICOMModuleGenericTest')"
Directory: C:/D/N/Slicer-1-build/Slicer-build/Modules/Scripted/Scripts/Testing/Python
"py_qSlicerDICOMModuleGenericTest" start time: Sep 08 03:52 Eastern Daylight Time
Output:
<end of output>
Test time = 900.01 sec
Test Failed.
"py_qSlicerDICOMModuleGenericTest" end time: Sep 08 04:07 Eastern Daylight Time
"py_qSlicerDICOMModuleGenericTest" time elapsed: 00:15:00
After speaking with Zach Mullen: if the test is timing out, it won't submit any output unless it had some output beforehand. |
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Linux: OK
Mac OS X: OK
The problem occurs on Windows machines. It is not crucial for RSNA.
Note: When I look at this issue again, introduce an error manually as in the description. |
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Fixed in r21276
See http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=21276 |
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Closing resolved issues that have not been updated in more than 3 months |
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