ENH: Update (1) ITKv4 from v4.5.2 to v4.6rc01 and (2) update BRAINSTools
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BRAINSTools
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Compliant with ITKv4 registration framework. This changes
the fundamental methods for registration to use the ITKv4 framework,
while maintaining both the API and the same results for all regression tests.
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DWIConvert tool also add features for reading additional scanner types.
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ITKv4 - New Features
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CMake improvements
- Improved Remote Module support
- Add ITK_FORBID_DOWNLOADS for package maintainers
- ITK_USE_SYSTEM_EXPAT available
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Filtering Improvements
- Moved TransformToDisplacementField out of Review
- An entire noise image generation module
- http://hdl.handle.net/10380/3158
- Better pipeline support for ResampleImageFilter
- Move MagnitudeAndPhaseToComplexImageFilter out of Review
- Setters for LabelMap overlay filters
- More consistent filter progress reporting
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ImageO improvements
- Register the GE image formats by default
- More IO modules are built as shared libraries
- OpenFileForReading/Writing methods in ImageIO
- Support for system tiff 4.0.0-4.0.2 (e.g. some Ubuntu versions)
- Mangling to internal OpenJPEG
- SCIFIO improvements
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Infrastructure improvements
- MetaDataObject print specialization for common types
- Improvements to ResourceProbe and RealTimeClock
- More Solve methods for VNLSparseLUSolverTraits
- Output stream operator for LightObject exposed
- FFTW bump to 3.3.3
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New Remote Modules
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Registrationv4 improvements
- v4 regular step gradient descent optimizer
- v4 amoeba optimizer
- v4 exhaustive optimizer
- v4 Powell optimizer
- v4 one-plus-one-evolutionary optimizer
- v4 LBFGS optimizer improvements
- Use registration method classes as pipeline filters
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Performance improvements
- Registrationv4
- Histogram computation
- Improved SmartPointer copy
- CompositeTransform
- Registration Jacobian re-use
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Wrapping improvements
- pygccxml 1.0.0
- .pth symlink usable in a virtualenv
- Cleaner CMake configuration
- SWIG and PCRE updated to 3.0.2, 8.34
- Latest GCCXML, which works with GCC 4.9
- Sweeping wrapping generation cleanup
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Many style improvements -- ITK gets more stylish with every release!
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Improved code coverage -- some measures put us over 85%!
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Co-authored-by: Hans Johnson <hans-johnson@uiowa.edu>
git-svn-id: http://svn.slicer.org/Slicer4/trunk@23373 3bd1e089-480b-0410-8dfb-8563597acbee |
