ENH: Update ITKv4 and BRAINSTools
The commit BRAINSia/BRAINSTools@7311363 related to the re-organization of
the "find_package(VTK)" call has not been included, this will be done
when Slicer itself will be re-organized.
// -----------------
ITK changes:
$ git shortlog v4.6.0...3147239 --no-merges
Bradley Lowekamp (4):
ENH: Adding License file from upstream MetaIO
ENH: Adding script to update MetaIO from upstream
ENH: Remove ITK MetaIO to prepare for upstream import
COMP: Fix variable type for Set/Get macros
David T. Chen (1):
DOC: Fixed HistogramThresholdImageFitler
Gert Wollny (1):
COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)
Hans Johnson (3):
COMP: Add tolerance for comparing floating point
PERF: Remove non-threadable algorithm components
PERF: Remove large foot print of PDF derivatives.
Matthew McCormick (13):
BUG: ArchiveTestingData.py future imports must occur at the beginning.
DOC: Remove Image2.cxx reference from Book 2.
DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.
DOC: Remove references to Book 1 sections from Book 2.
DOC: Make BinaryThresholdImageFilter not floating.
DOC: Fix Software Guide figure caption for FlipImageFilter.
DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.
DOC: Remove duplicate figure in LaplacianRecursiveGaussianImageFilter2.cxx.
DOC: ImageRandomConstIteratorWithIndex table reference.
BUG: Bump GCCXML to 2014-08-06.
BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
BUG: Call clear instead of empty on PatchBasedDenoising EmptyCaches().
BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
MetaIO Maintainers (1):
MetaIO (reduced)
Michka Popoff (4):
BUG: Improve SWIG version check
BUG: Add VTK_VERSION for older VTK versions
BUG: Update VTK minimum version (for release)
BUG: Fix memory leak in MetaImageIO after exception
// -----------------
BRAINSTools changes:
$ git shortlog slicer-e5c9c8c_2014-07-29...slicer-57c31ab_2014-08-08 --no-merges
Ali Ghayoor (2):
BUG: Fix cmake bug and replace a test baseline
BUG: Fix ValidateBRAINSResampleTest4 by increasing tolearance
David Welch (9):
WIP: Initial testing with one session/subject
WIP: Run one session/subject successfully
ENH: Refactored workflow with new config variable and singleSession.py executable
STYLE: Updated configuration template file
BUG: singleSession.py can now be called as an executable w/o modifying PYTHONPATH BUG: Fixed --session flag to take in one or more session IDs
BUG: Fixing the template running stage.
STYLE: Remove python warning and reorganize imports
STYLE: Removed master_config dictionary in favor of descriptive dictionary names
ENH: Fixed command line for singleSession and template STYLE: Moved imports in template to top of file BUG: Fixed DataGrabber for template workflow BUG: Fixed session checking in singleSe
Hans Johnson (27):
ENH: Utilize new mattes with improved threading
BUG: Fixed bugs in singleSession
COMP: Address dependencies on tests.
BUG: Incomplete refactorings done for Autoworkup
ENH: Add convience alias for pushing changes.
ENH: Allow XML files to have relative paths to images
COMP: Add warning suppressions for OpenCV.
COMP: Add second suppression for OpenCV.
BUG: Missed brainmask read read wrapping
ENH: Refactoring template.py for consistent data sinks.
ENH: More changes to get atlas generation cleaned up.
BUG: Incorrect file was used for selecting the brain mask.
STYLE: Remove unnecessary code.
BUG: Data grabber changes required dictionary changes
BUG: The master atlas should be specified from config file
STYLE: Remove global code from init.py
BUG: Command line wfrun argument was not being respected
STYLE: Remove unnecessary checking
BUG: The logitudinal processing could not occur previously
ENH: Add separate config variables specific to each workphase
BUG: Premature return from loop
ENH: Updated to latest ITK+Gerrit Mattes patch
ENH: Update to latest version of ANTS.
COMP: Erroneous closing ')'
ENH: Remove outdated and non-functioning md5 files.
ENH: Added Sentinal output file checking for Workflows
STYLE: Only give debugging information when requested
Jean-Christophe Fillion-Robin (2):
COMP: Move ITK find_package calls into each sub-project.
COMP: Fixes tests by explicitly specifying list of ITK IO components
Kent Williams (15):
COMP: get rid of ITKv3 Compatibility ifdefs
COMP: Sync with NAMICExternalProjects
COMP: fix teem build and ITK->VTK dependency
BUG: don't extend composite transform filenames needlessly.there was some deficient logic that was changing the filename of composit transforms to force them to hdf5 format, even if the filename give
BUG: don't extend composite transform filenames needlessly.there was some deficient logic that was changing the filename of composit transforms to force them to hdf5 format, even if the filename give
COMP: update teem tag
COMP: Make FSLToNrrd synthesize bval/bvec filenames if none are given.
COMP: Move find_package(ITK) into a macro
COMP: tune module list
COMP: streamlined FindITKUtil commands
COMP: cleaned up CMakeLists.txt with respect to FindITKUtil
COMP: slight changes to address compiler errors in BRAINSSurfaceTools
COMP: iccdef changes to work with ITKv4
COMP: add new parameter for FSLToNrrd conversion
COMP: reorganize path processing
git-svn-id: http://svn.slicer.org/Slicer4/trunk@23571 3bd1e089-480b-0410-8dfb-8563597acbee |
