Changeset |
ENH: Upgrade to NumPy 1.9.2
This commit upgrades from NumPy 1.4.1 to NumPy 1.9.2.
To continue building NumPy without a Fortran compiler, a build step is
introduced that applies a patch to effectively back out the following
change:
numpy/numpy@4a3fd1f
This new version of NumPy still compiles with Visual Studio 2008 and Visual
Studio 2010, but now also compiles with Visual Studio 2013. To make it compile
with Visual Studio 2013, this commit updates the patched version of
'msvc9compiler.py' for Python 2.7 by adding an entry in WINSDK_VERSION_MAP for
Visual Studio 2013. This fixes the following error when building NumPy with
Visual Studio 2013:
Traceback (most recent call last):
...
File "C:\dev\S4D\NUMPY\numpy\distutils\command\config.py", line 55, in _check_compiler
self.compiler.initialize()
File "C:\dev\S4D\python-install\Lib\distutils\msvc9compiler.py", line 500, in initialize
vc_env = query_vcvarsall(VERSION, plat_spec)
File "C:\dev\S4D\python-install\Lib\distutils\msvc9compiler.py", line 371, in query_vcvarsall
for sdkver in WINSDK_VERSION_MAP[versionstr]:
KeyError: '12.0'
NumPy test results on each platform are below:
>>> import numpy
>>> numpy.test(label='full')
- Mac OS X 10.6.8 (GCC 4.2.1 Compatible Clang 3.1, Release):
- NumPy 1.4.1, manually disabled test_multiarray.TestIO.* because many tests segfault:
ERROR: Failure: TypeError (setting function's dictionary to a non-dict)
FAIL: Check formatting of complex types.
FAIL: Check formatting of complex types.
FAIL: Check formatting of complex types.
FAILED (KNOWNFAIL=4, SKIP=4, errors=1, failures=3)
<nose.result.TextTestResult run=2364 errors=1 failures=3>
- NumPy 1.9.2:
OK (KNOWNFAIL=5, SKIP=43)
<nose.result.TextTestResult run=5382 errors=0 failures=0>
- Ubuntu 14.04.3 (GCC 4.8.4, Debug):
- NumPy 1.4.1, manually disabled test_multiarray.TestIO.* because many tests segfault:
ERROR: Failure: TypeError (setting function's dictionary to a non-dict)
FAIL: Check formatting of complex types.
FAIL: Check formatting of complex types.
FAIL: Check formatting of complex types.
FAILED (KNOWNFAIL=4, SKIP=4, errors=1, failures=3)
<nose.result.TextTestResult run=2364 errors=1 failures=3>
- NumPy 1.9.2:
FAIL: test_allnans (test_nanfunctions.TestNanFunctions_Median)
FAILED (KNOWNFAIL=5, SKIP=40, failures=1)
<nose.result.TextTestResult run=5418 errors=0 failures=1>
- Windows (Visual Studio 2008, Release):
- NumPy 1.4.1, manually disabled test_multiarray.TestIO.* because many tests segfault:
ERROR: Failure: TypeError (setting function's dictionary to a non-dict)
FAIL: Check formatting of complex types.
FAIL: Check formatting of complex types.
FAIL: Check formatting of complex types.
FAILED (KNOWNFAIL=8, SKIP=4, errors=1, failures=3)
<nose.result.TextTestResult run=2216 errors=1 failures=3>
- NumPy 1.9.2:
FAIL: test_allnans (test_nanfunctions.TestNanFunctions_Median)
FAILED (KNOWNFAIL=10, SKIP=44, failures=1)
<nose.result.TextTestResult run=5226 errors=0 failures=1>
- Windows (Visual Studio 2013, Debug):
- NumPy 1.4.1:
Unsupported compiler.
- NumPy 1.9.2:
FAIL: test_any_ninf (test_umath.TestArctan2SpecialValues)
FAIL: test_any_pinf (test_umath.TestArctan2SpecialValues)
FAIL: test_inf_ninf (test_umath.TestArctan2SpecialValues)
FAIL: test_inf_pinf (test_umath.TestArctan2SpecialValues)
FAIL: test_one_one (test_umath.TestArctan2SpecialValues)
FAIL: test_zero_negative (test_umath.TestArctan2SpecialValues)
FAIL: test_zero_nzero (test_umath.TestArctan2SpecialValues)
FAIL: test_zero_pzero (test_umath.TestArctan2SpecialValues)
FAIL: test_umath.TestComplexFunctions.test_branch_cuts(<ufunc 'log1p'>, -1.5, 1j, 1, -1)
FAIL: test_umath.TestLogAddExp.test_inf
FAIL: test_umath_complex.TestCarg.test_special_values(<ufunc '_arg'>, -inf, 1, 3.141592653589793, False)
FAIL: test_umath_complex.TestCarg.test_special_values(<ufunc '_arg'>, inf, -1, -0.0, False)
FAIL: test_umath_complex.TestCarg.test_special_values(<ufunc '_arg'>, -inf, inf, 2.356194490192345, False)
FAIL: test_umath_complex.TestCarg.test_special_values(<ufunc '_arg'>, -inf, -inf, -2.356194490192345, False)
FAIL: test_umath_complex.TestCarg.test_special_values(<ufunc '_arg'>, inf, -inf, -0.7853981633974483, False)
FAIL: test_basic (test_function_base.TestAngle)
FAILED (KNOWNFAIL=10, SKIP=42, failures=16)
<nose.result.TextTestResult run=5226 errors=0 failures=16>
No new Slicer test failures are seen when running the tests manually on:
- Mac OS X 10.6.8 (Release)
- Ubuntu 14.04.3 (Debug)
- Windows (Visual Studio 2013, Debug)
Fixes 0003159
Fixes 0003160
From: Max Smolens <max.smolens@kitware.com>
git-svn-id: http://svn.slicer.org/Slicer4/trunk@24561 3bd1e089-480b-0410-8dfb-8563597acbee |